Wall clock time and date at job start Tue Mar 31 2020 13:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99772 * 2 1 4 4 H 1.48500 * 109.47249 * 270.00331 * 3 2 1 5 5 H 1.48499 * 109.47144 * 30.00434 * 3 2 1 6 6 H 1.48499 * 109.46829 * 150.00345 * 3 2 1 7 7 C 1.38810 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00105 * 196.90614 * 7 2 1 9 9 N 1.36939 * 119.99894 * 16.90199 * 7 2 1 10 10 C 1.47146 * 120.98180 * 206.25281 * 9 7 2 11 11 C 1.53297 * 108.38341 * 230.51331 * 10 9 7 12 12 O 1.42951 * 109.26517 * 307.71813 * 11 10 9 13 13 C 1.42962 * 114.16686 * 62.50377 * 12 11 10 14 14 H 1.08997 * 109.51877 * 57.44827 * 13 12 11 15 15 C 1.52997 * 109.51385 * 177.55222 * 13 12 11 16 16 N 1.46503 * 109.47174 * 299.89337 * 15 13 12 17 17 C 1.34774 * 120.00271 * 179.97438 * 16 15 13 18 18 O 1.21605 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.47391 * 120.00151 * 180.02562 * 17 16 15 20 20 C 1.37367 * 128.56567 * 0.16297 * 19 17 16 21 21 O 1.33493 * 106.34042 * 180.23686 * 20 19 17 22 22 N 1.20651 * 113.15892 * 359.74217 * 21 20 19 23 23 C 1.30015 * 112.30111 * 359.97438 * 22 21 20 24 24 C 1.50703 * 127.33474 * 179.97438 * 23 22 21 25 25 C 1.53005 * 117.49958 * 8.65465 * 24 23 22 26 26 C 1.52994 * 117.50026 * 300.02858 * 24 23 22 27 27 C 1.47155 * 120.98170 * 26.22846 * 9 7 2 28 28 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.68413 * 350.23535 * 10 9 7 30 30 H 1.09005 * 109.68445 * 110.74986 * 10 9 7 31 31 H 1.08997 * 109.51522 * 67.62273 * 11 10 9 32 32 H 1.09006 * 109.51026 * 187.71949 * 11 10 9 33 33 H 1.09005 * 109.47249 * 179.89423 * 15 13 12 34 34 H 1.09001 * 109.47686 * 59.89649 * 15 13 12 35 35 H 0.96998 * 119.99552 * 359.97438 * 16 15 13 36 36 H 1.08003 * 126.82479 * 359.97438 * 20 19 17 37 37 H 1.09004 * 115.54727 * 154.35598 * 24 23 22 38 38 H 1.08998 * 117.49674 * 359.97438 * 25 24 23 39 39 H 1.08991 * 117.49878 * 145.01722 * 25 24 23 40 40 H 1.09003 * 117.49973 * 214.97294 * 26 24 23 41 41 H 1.09000 * 117.50201 * 359.97438 * 26 24 23 42 42 H 1.08997 * 109.67711 * 9.76202 * 27 9 7 43 43 H 1.08999 * 109.68374 * 249.21001 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3700 -2.3623 -0.3459 10 6 1.8341 -3.6633 0.1612 11 6 1.9812 -4.6207 -1.0269 12 8 0.7654 -4.6296 -1.7789 13 6 0.4242 -3.3663 -2.3547 14 1 1.2369 -3.0276 -2.9973 15 6 -0.8549 -3.5104 -3.1816 16 7 -0.6379 -4.4887 -4.2504 17 6 -1.6344 -4.7801 -5.1098 18 8 -2.7135 -4.2307 -4.9984 19 6 -1.4162 -5.7647 -6.1846 20 6 -0.2816 -6.4851 -6.4687 21 8 -0.5709 -7.2370 -7.5332 22 7 -1.7005 -7.0849 -7.9288 23 6 -2.3609 -6.2213 -7.2157 24 6 -3.7879 -5.7770 -7.4090 25 6 -4.6322 -6.5379 -8.4332 26 6 -4.1487 -5.1196 -8.7426 27 6 0.1973 -2.3446 -1.2346 28 1 -0.4850 0.8400 0.0004 29 1 2.7976 -3.5420 0.6564 30 1 1.1062 -4.0629 0.8675 31 1 2.8001 -4.2871 -1.6642 32 1 2.1910 -5.6258 -0.6608 33 1 -1.1155 -2.5465 -3.6188 34 1 -1.6672 -3.8491 -2.5385 35 1 0.2230 -4.9266 -4.3395 36 1 0.6588 -6.4472 -5.9391 37 1 -4.2912 -5.4099 -6.5144 38 1 -4.1554 -7.3596 -8.9675 39 1 -5.6912 -6.6717 -8.2126 40 1 -4.8897 -4.3205 -8.7256 41 1 -3.3539 -5.0081 -9.4801 42 1 0.0769 -1.3499 -1.6637 43 1 -0.6957 -2.6117 -0.6694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035506637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:59 Heat of formation + Delta-G solvation = 11.573950 kcal Electronic energy + Delta-G solvation = -26799.536198 eV Core-core repulsion = 22849.121967 eV Total energy + Delta-G solvation = -3950.414231 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.99426 -40.84163 -39.90676 -38.46020 -36.46770 -35.87235 -34.35561 -33.29248 -33.12270 -32.17633 -29.12539 -27.64544 -25.72019 -25.24664 -24.92808 -23.39952 -23.21042 -21.98671 -21.37293 -21.05892 -19.42869 -18.87367 -18.75619 -17.80723 -17.49783 -17.13857 -16.89675 -16.47361 -16.09751 -16.03034 -15.83550 -15.50765 -15.25421 -15.03701 -14.63603 -14.57840 -14.24881 -13.78032 -13.22134 -13.11861 -12.98955 -12.75607 -12.67526 -12.57888 -12.52009 -12.34055 -12.16322 -12.08403 -11.86825 -11.53898 -11.32483 -11.18423 -10.85618 -10.78608 -10.56892 -10.54660 -10.17558 -8.75174 -7.91077 -5.38532 0.05501 0.62954 1.47088 1.48467 1.57280 1.80375 2.09301 2.22935 2.48169 2.78130 2.79101 2.93303 3.19162 3.23883 3.50588 3.77140 3.85291 3.91995 4.01498 4.03945 4.07902 4.10147 4.28981 4.47496 4.53118 4.59379 4.61925 4.65345 4.67869 4.71624 4.84424 4.91124 4.98860 5.08877 5.09424 5.14009 5.24700 5.27970 5.54357 5.61048 6.27032 6.33490 6.44365 7.06004 7.09505 7.17219 7.75182 8.28198 9.14539 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002672 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.696220 B =10477.277586 C =11272.031248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.969 3.031 4 H -0.283 1.283 5 H -0.298 1.298 6 H -0.267 1.267 7 C -0.264 4.264 8 H 0.075 0.925 9 N -0.614 5.614 10 C 0.100 3.900 11 C 0.058 3.942 12 O -0.388 6.388 13 C 0.077 3.923 14 H 0.070 0.930 15 C 0.145 3.855 16 N -0.697 5.697 17 C 0.593 3.407 18 O -0.572 6.572 19 C -0.276 4.276 20 C 0.036 3.964 21 O 0.102 5.898 22 N -0.374 5.374 23 C 0.086 3.914 24 C -0.111 4.111 25 C -0.151 4.151 26 C -0.152 4.152 27 C 0.158 3.842 28 H 0.251 0.749 29 H 0.072 0.928 30 H 0.013 0.987 31 H 0.058 0.942 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.417 0.583 36 H 0.278 0.722 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.093 0.907 42 H 0.067 0.933 43 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.706 -14.818 -15.310 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.225 1.225 6 H -0.191 1.191 7 C -0.394 4.394 8 H 0.092 0.908 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.019 4.019 12 O -0.307 6.307 13 C 0.018 3.982 14 H 0.088 0.912 15 C 0.021 3.979 16 N -0.349 5.349 17 C 0.381 3.619 18 O -0.452 6.452 19 C -0.284 4.284 20 C -0.046 4.046 21 O 0.043 5.957 22 N -0.081 5.081 23 C -0.076 4.076 24 C -0.130 4.130 25 C -0.188 4.188 26 C -0.190 4.190 27 C 0.031 3.969 28 H 0.060 0.940 29 H 0.090 0.910 30 H 0.031 0.969 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.254 0.746 36 H 0.293 0.707 37 H 0.140 0.860 38 H 0.117 0.883 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -0.489 -15.220 -16.260 22.277 hybrid contribution 0.551 1.866 1.346 2.366 sum 0.063 -13.355 -14.914 20.019 Atomic orbital electron populations 1.70179 1.06718 1.26052 1.55177 1.25833 0.96059 1.01647 1.01090 0.85240 0.78065 0.79308 0.77672 1.20951 1.22492 1.19136 1.19553 0.93051 0.85523 1.41284 0.90773 1.44359 1.33700 1.02418 1.53414 1.21851 0.98489 0.86516 0.95691 1.23078 0.85863 1.00653 0.92350 1.87788 1.43119 1.30442 1.69388 1.22741 0.95854 0.85477 0.94153 0.91249 1.21141 0.96543 0.92638 0.87627 1.45507 1.15701 1.43695 1.29967 1.17066 0.83739 0.80666 0.80443 1.90778 1.26448 1.53889 1.74074 1.22121 0.96310 1.07088 1.02887 1.27263 1.00744 0.88531 0.88095 1.84557 1.23149 1.51135 1.36818 1.73608 0.92891 1.19498 1.22094 1.24072 0.97383 0.94161 0.91943 1.20378 0.88399 1.07636 0.96580 1.23103 1.00496 0.95235 0.99997 1.23083 1.03558 0.97113 0.95277 1.21095 0.88223 0.97623 0.89928 0.93981 0.91003 0.96852 0.92411 0.86005 0.90373 0.92110 0.74591 0.70710 0.85991 0.88319 0.86129 0.86495 0.88835 0.91493 0.98311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.28 11.14 21.65 0.24 -54.04 16 2 C -0.05 -2.75 4.95 84.86 0.42 -2.33 16 3 Si 0.97 43.43 29.59 68.60 2.03 45.46 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.26 -13.92 9.65 84.03 0.81 -13.11 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 9 N -0.61 -29.57 3.05 -697.53 -2.13 -31.70 16 10 C 0.10 3.83 6.74 86.36 0.58 4.41 16 11 C 0.06 1.67 6.98 72.08 0.50 2.18 16 12 O -0.39 -12.29 10.14 -148.98 -1.51 -13.80 16 13 C 0.08 2.65 2.86 30.69 0.09 2.73 16 14 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.15 4.58 5.37 86.38 0.46 5.04 16 16 N -0.70 -17.13 5.45 -466.40 -2.54 -19.67 16 17 C 0.59 16.58 7.81 86.65 0.68 17.26 16 18 O -0.57 -20.69 15.81 -4.05 -0.06 -20.76 16 19 C -0.28 -6.18 6.47 -18.75 -0.12 -6.30 16 20 C 0.04 0.48 11.85 67.61 0.80 1.28 16 21 O 0.10 1.78 11.06 77.00 0.85 2.63 16 22 N -0.37 -8.44 11.71 -44.79 -0.52 -8.97 16 23 C 0.09 2.10 7.07 45.16 0.32 2.42 16 24 C -0.11 -2.58 5.89 -11.54 -0.07 -2.64 16 25 C -0.15 -2.67 10.16 30.60 0.31 -2.36 16 26 C -0.15 -2.84 10.23 30.59 0.31 -2.53 16 27 C 0.16 7.32 4.73 86.35 0.41 7.72 16 28 H 0.25 14.19 8.31 -92.71 -0.77 13.41 16 29 H 0.07 2.58 7.96 -2.38 -0.02 2.56 16 30 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.12 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 35 H 0.42 7.26 7.54 -92.71 -0.70 6.56 16 36 H 0.28 0.50 7.68 -2.91 -0.02 0.48 16 37 H 0.12 3.23 7.30 -2.38 -0.02 3.21 16 38 H 0.10 1.78 7.97 -2.39 -0.02 1.76 16 39 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.07 3.49 6.14 -2.39 -0.01 3.47 16 43 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 Total: -1.00 -72.57 362.24 2.21 -70.36 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.34 Total: 16.70 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 5.51 Total: 13.78 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -4.95 Total: -114.37 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -0.72 Total: -31.93 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.57 2.21 -70.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035506637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.933 kcal (2) G-P(sol) polarization free energy of solvation -72.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds