Wall clock time and date at job start Tue Mar 31 2020 13:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99746 * 2 1 4 4 H 1.48495 * 109.46937 * 239.99777 * 3 2 1 5 5 H 1.48497 * 109.46934 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47177 * 119.99952 * 3 2 1 7 7 C 1.38812 * 120.00456 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00294 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00054 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47175 * 34.99883 * 10 9 7 12 12 C 1.52996 * 109.46993 * 275.00012 * 10 9 7 13 13 C 1.53002 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47415 * 59.99860 * 13 12 10 15 15 C 1.53006 * 109.47164 * 300.00027 * 14 13 12 16 16 C 1.52997 * 109.47204 * 154.99988 * 10 9 7 17 17 H 1.09000 * 109.47140 * 59.99873 * 16 10 9 18 18 N 1.46506 * 109.47277 * 300.00074 * 16 10 9 19 19 C 1.34776 * 120.00391 * 154.99599 * 18 16 10 20 20 O 1.21612 * 119.99911 * 0.02562 * 19 18 16 21 21 C 1.47286 * 120.00167 * 180.02562 * 19 18 16 22 22 C 1.36569 * 125.80662 * 179.71727 * 21 19 18 23 23 C 1.40066 * 106.92778 * 179.85154 * 22 21 19 24 24 C 1.36570 * 106.92509 * 0.40904 * 23 22 21 25 25 C 1.47294 * 125.80783 * 179.74354 * 24 23 22 26 26 N 1.34771 * 120.00022 * 180.02562 * 25 24 23 27 27 O 1.21610 * 119.99791 * 0.02786 * 25 24 23 28 28 O 1.34554 * 108.38806 * 359.74835 * 24 23 22 29 29 H 0.97001 * 120.00410 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99685 * 359.97438 * 9 7 2 31 31 H 1.08992 * 109.47534 * 60.00265 * 12 10 9 32 32 H 1.08996 * 109.47134 * 299.99460 * 12 10 9 33 33 H 1.09000 * 109.46986 * 299.99742 * 13 12 10 34 34 H 1.09001 * 109.47601 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46922 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.47140 * 59.99976 * 14 13 12 37 37 H 1.08993 * 109.46955 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.47050 * 300.00004 * 15 14 13 39 39 H 0.97001 * 119.99394 * 335.00515 * 18 16 10 40 40 H 1.08003 * 126.53658 * 0.02562 * 22 21 19 41 41 H 1.07996 * 126.54109 * 180.19843 * 23 22 21 42 42 H 0.97003 * 119.99817 * 0.02562 * 26 25 24 43 43 H 0.97000 * 120.00101 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2124 5 1 1.2850 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5900 12 6 2.4221 -4.0355 -1.4364 13 6 3.1866 -5.3608 -1.4365 14 6 2.3091 -6.4559 -0.8271 15 6 1.9452 -6.0771 0.6100 16 6 1.1811 -4.7521 0.6102 17 1 0.2704 -4.8584 0.0207 18 7 0.8326 -4.3894 1.9862 19 6 -0.2854 -4.8863 2.5515 20 8 -1.0047 -5.6361 1.9196 21 6 -0.6360 -4.5212 3.9347 22 6 -1.7377 -4.9488 4.6191 23 6 -1.6784 -4.3670 5.8919 24 6 -0.5478 -3.6017 5.9269 25 6 -0.0852 -2.7996 7.0724 26 7 1.0531 -2.0843 6.9783 27 8 -0.7305 -2.7830 8.1031 28 8 0.0717 -3.7049 4.7369 29 1 -0.4851 0.8400 0.0004 30 1 0.3557 -2.3881 0.0005 31 1 3.0470 -3.2552 -1.8708 32 1 1.5115 -4.1419 -2.0258 33 1 4.0973 -5.2549 -0.8470 34 1 3.4463 -5.6305 -2.4602 35 1 2.8540 -7.4000 -0.8267 36 1 1.3984 -6.5618 -1.4166 37 1 1.3204 -6.8575 1.0443 38 1 2.8558 -5.9712 1.1995 39 1 1.4066 -3.7916 2.4902 40 1 -2.5065 -5.6117 4.2504 41 1 -2.3924 -4.4960 6.6917 42 1 1.5676 -2.0974 6.1561 43 1 1.3576 -1.5558 7.7326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085267721.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:28 Heat of formation + Delta-G solvation = -86.324892 kcal Electronic energy + Delta-G solvation = -27364.750405 eV Core-core repulsion = 23410.090962 eV Total energy + Delta-G solvation = -3954.659443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.95636 -41.09273 -40.36164 -39.19472 -35.81377 -35.36869 -35.01897 -34.12748 -32.99704 -31.72972 -30.41173 -29.28492 -26.05036 -25.54501 -23.79843 -22.89333 -22.46820 -22.09267 -21.36344 -20.90813 -19.81164 -19.17170 -18.67941 -17.99853 -17.77212 -17.41391 -16.80122 -16.09792 -16.05843 -15.65711 -15.55091 -15.34628 -15.21910 -14.77245 -14.61452 -14.45298 -14.29247 -14.19831 -14.01383 -13.62999 -13.51722 -12.91768 -12.77556 -12.27557 -12.18524 -12.05985 -12.03406 -11.87243 -11.67234 -11.43647 -11.39997 -11.26863 -11.06868 -10.93343 -10.84636 -10.21777 -9.85904 -8.99293 -7.90537 -5.19454 -0.53615 0.76389 1.17440 1.48620 1.50736 1.56669 1.93053 1.93904 2.06267 2.39903 2.57391 3.41975 3.48445 3.68402 3.70197 3.80679 3.86324 4.13848 4.26943 4.31705 4.34116 4.38666 4.44606 4.50085 4.60493 4.70298 4.71991 4.96071 5.01200 5.07575 5.11752 5.25781 5.30053 5.31924 5.37285 5.45079 5.52899 5.55594 5.65944 5.69505 6.14197 6.28767 6.39004 6.94430 6.99016 7.36082 8.09785 8.33474 9.32196 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008622 B = 0.004766 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3246.646442 B = 5873.134438 C = 8221.573606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.073 4.073 3 Si 0.966 3.034 4 H -0.281 1.281 5 H -0.304 1.304 6 H -0.274 1.274 7 C -0.230 4.230 8 H 0.080 0.920 9 N -0.733 5.733 10 C 0.172 3.828 11 H 0.061 0.939 12 C -0.128 4.128 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.116 4.116 16 C 0.145 3.855 17 H 0.062 0.938 18 N -0.688 5.688 19 C 0.598 3.402 20 O -0.549 6.549 21 C -0.048 4.048 22 C -0.133 4.133 23 C -0.126 4.126 24 C -0.062 4.062 25 C 0.612 3.388 26 N -0.819 5.819 27 O -0.552 6.552 28 O -0.149 6.149 29 H 0.247 0.753 30 H 0.369 0.631 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.411 0.589 40 H 0.182 0.818 41 H 0.188 0.812 42 H 0.419 0.581 43 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.996 -12.113 8.797 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.265 4.265 3 Si 0.796 3.204 4 H -0.208 1.208 5 H -0.231 1.231 6 H -0.200 1.200 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.372 5.372 10 C 0.064 3.936 11 H 0.079 0.921 12 C -0.169 4.169 13 C -0.149 4.149 14 C -0.148 4.148 15 C -0.155 4.155 16 C 0.040 3.960 17 H 0.080 0.920 18 N -0.336 5.336 19 C 0.384 3.616 20 O -0.430 6.430 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.146 4.146 24 C -0.117 4.117 25 C 0.396 3.604 26 N -0.383 5.383 27 O -0.432 6.432 28 O -0.045 6.045 29 H 0.056 0.944 30 H 0.200 0.800 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.247 0.753 40 H 0.200 0.800 41 H 0.205 0.795 42 H 0.250 0.750 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 5.464 -12.422 8.827 16.189 hybrid contribution 0.068 1.815 -0.115 1.820 sum 5.532 -10.607 8.712 14.799 Atomic orbital electron populations 1.69824 1.06678 1.25762 1.59765 1.25460 0.96078 1.00795 1.04149 0.85326 0.77141 0.79732 0.78231 1.20765 1.23101 1.20002 1.19530 0.91392 0.84792 1.40474 0.90183 1.42594 1.05183 1.00774 1.88609 1.20679 0.93857 0.84126 0.94973 0.92133 1.22087 0.99614 0.97502 0.97658 1.21525 0.98416 0.93325 1.01596 1.21479 0.99958 0.99066 0.94311 1.21824 1.00191 0.94731 0.98741 1.21343 0.98331 0.95394 0.80895 0.91980 1.45844 1.24210 1.47945 1.15571 1.16801 0.81389 0.80461 0.82949 1.90825 1.52001 1.38132 1.62009 1.22438 0.96017 0.99018 0.92713 1.22212 0.98063 1.01920 0.93115 1.22230 0.97448 0.96435 0.98520 1.22526 0.97362 1.05810 0.85962 1.16583 0.81503 0.78453 0.83888 1.43590 1.24385 1.48774 1.21536 1.90895 1.57303 1.65755 1.29271 1.84035 1.45997 1.53116 1.21336 0.94402 0.80016 0.93145 0.93928 0.90941 0.90904 0.89366 0.92583 0.91956 0.90146 0.75273 0.80030 0.79503 0.74995 0.74387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 2 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 3 Si 0.97 44.17 29.55 68.60 2.03 46.20 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.23 -11.75 9.93 84.03 0.83 -10.92 16 8 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.73 -33.95 4.95 -322.95 -1.60 -35.55 16 10 C 0.17 6.01 2.29 44.99 0.10 6.11 16 11 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 12 C -0.13 -4.06 5.50 30.59 0.17 -3.90 16 13 C -0.11 -2.50 5.92 30.59 0.18 -2.32 16 14 C -0.11 -2.33 5.92 30.60 0.18 -2.15 16 15 C -0.12 -2.80 5.49 30.58 0.17 -2.63 16 16 C 0.15 4.56 1.97 44.97 0.09 4.65 16 17 H 0.06 2.30 7.58 -2.39 -0.02 2.29 16 18 N -0.69 -21.50 4.91 -446.01 -2.19 -23.68 16 19 C 0.60 19.75 7.77 86.62 0.67 20.42 16 20 O -0.55 -20.69 16.52 -4.07 -0.07 -20.75 16 21 C -0.05 -1.39 7.14 24.26 0.17 -1.21 16 22 C -0.13 -3.35 10.60 22.32 0.24 -3.11 16 23 C -0.13 -2.94 10.60 22.32 0.24 -2.71 16 24 C -0.06 -1.57 7.14 24.26 0.17 -1.39 16 25 C 0.61 14.53 8.08 86.63 0.70 15.23 16 26 N -0.82 -13.36 8.87 -175.99 -1.56 -14.92 16 27 O -0.55 -16.13 17.70 -4.06 -0.07 -16.20 16 28 O -0.15 -3.98 10.14 -7.42 -0.08 -4.06 16 29 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 30 H 0.37 19.40 7.80 -92.71 -0.72 18.68 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.41 12.26 8.36 -92.71 -0.78 11.49 16 40 H 0.18 3.99 8.06 -2.91 -0.02 3.96 16 41 H 0.19 3.53 8.06 -2.91 -0.02 3.50 16 42 H 0.42 5.85 8.59 -92.71 -0.80 5.05 16 43 H 0.42 5.07 8.93 -92.71 -0.83 4.24 16 Total: -1.00 -68.87 367.60 -0.90 -69.77 By element: Atomic # 1 Polarization: 46.27 SS G_CDS: -2.03 Total: 44.24 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 4.38 Total: 12.57 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -5.07 Total: -131.77 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.21 Total: -41.01 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -68.87 -0.90 -69.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085267721.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.555 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds