Wall clock time and date at job start Tue Mar 31 2020 13:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00037 * 2 1 4 4 H 1.48501 * 109.47111 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47385 * 29.99978 * 3 2 1 6 6 H 1.48501 * 109.47573 * 150.00137 * 3 2 1 7 7 C 1.38810 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99793 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00080 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47103 * 180.02562 * 10 9 7 12 12 C 1.53047 * 109.45733 * 184.99920 * 11 10 9 13 13 C 1.53199 * 109.31075 * 178.61507 * 12 11 10 14 14 N 1.46926 * 108.77125 * 54.63661 * 13 12 11 15 15 C 1.34783 * 120.62533 * 126.36872 * 14 13 12 16 16 O 1.21606 * 120.00145 * 3.98986 * 15 14 13 17 17 C 1.47290 * 119.99614 * 183.98593 * 15 14 13 18 18 C 1.36577 * 125.80303 * 173.09323 * 17 15 14 19 19 C 1.40062 * 106.92500 * 179.77024 * 18 17 15 20 20 C 1.36567 * 106.92505 * 0.37761 * 19 18 17 21 21 C 1.47295 * 125.80335 * 179.88517 * 20 19 18 22 22 N 1.34783 * 119.99749 * 179.71924 * 21 20 19 23 23 O 1.21610 * 120.00125 * 359.71489 * 21 20 19 24 24 O 1.34547 * 108.39074 * 359.61934 * 20 19 18 25 25 C 1.46918 * 118.74401 * 306.64151 * 14 13 12 26 26 C 1.52763 * 109.00920 * 53.30831 * 25 14 13 27 27 H 0.97001 * 119.99471 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99893 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.46298 * 60.00535 * 10 9 7 30 30 H 1.09007 * 109.47180 * 300.00858 * 10 9 7 31 31 H 1.08999 * 109.45190 * 304.96638 * 11 10 9 32 32 H 1.08999 * 109.49050 * 58.66984 * 12 11 10 33 33 H 1.08994 * 109.52345 * 298.58507 * 12 11 10 34 34 H 1.09001 * 109.58330 * 294.85290 * 13 12 11 35 35 H 1.09001 * 109.70040 * 174.49408 * 13 12 11 36 36 H 1.08001 * 126.53805 * 0.04242 * 18 17 15 37 37 H 1.08003 * 126.53491 * 180.27582 * 19 18 17 38 38 H 0.97002 * 119.99586 * 179.97438 * 22 21 20 39 39 H 0.96997 * 119.99922 * 359.72169 * 22 21 20 40 40 H 1.09000 * 109.58943 * 173.15028 * 25 14 13 41 41 H 1.09003 * 109.58539 * 293.57003 * 25 14 13 42 42 H 1.09000 * 109.56722 * 185.55213 * 26 25 14 43 43 H 1.08999 * 109.35526 * 65.50370 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0009 12 6 6.3803 -3.5116 -0.1237 13 6 7.8848 -3.2250 -0.1584 14 7 8.2422 -2.4303 1.0246 15 6 9.2264 -2.8349 1.8518 16 8 9.8764 -3.8271 1.5839 17 6 9.5146 -2.0752 3.0803 18 6 10.3866 -2.4468 4.0635 19 6 10.3571 -1.4400 5.0367 20 6 9.4620 -0.5009 4.6102 21 6 9.1073 0.7381 5.3233 22 7 8.2087 1.5892 4.7897 23 8 9.6253 0.9932 6.3936 24 8 8.9635 -0.8971 3.4249 25 6 7.5024 -1.1895 1.2920 26 6 6.0059 -1.4959 1.3074 27 1 -0.4849 0.8401 0.0004 28 1 3.8646 -0.3621 -0.0004 29 1 3.8485 -3.0433 -0.8882 30 1 3.8491 -3.0416 0.8918 31 1 5.8656 -1.5466 -0.8419 32 1 6.0850 -4.0173 -1.0430 33 1 6.1506 -4.1474 0.7313 34 1 8.1295 -2.6661 -1.0617 35 1 8.4381 -4.1642 -0.1486 36 1 10.9880 -3.3437 4.0843 37 1 10.9314 -1.4124 5.9510 38 1 7.9748 2.4049 5.2596 39 1 7.7985 1.3876 3.9341 40 1 7.8016 -0.7870 2.2598 41 1 7.7154 -0.4612 0.5095 42 1 5.4441 -0.5672 1.4067 43 1 5.7797 -2.1503 2.1493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205655135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:11 Heat of formation + Delta-G solvation = -34.180164 kcal Electronic energy + Delta-G solvation = -27244.843957 eV Core-core repulsion = 23292.445678 eV Total energy + Delta-G solvation = -3952.398278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.33378 -40.31849 -39.56264 -38.04586 -35.32230 -34.36619 -33.59929 -32.98236 -31.66913 -30.81872 -30.36109 -27.33498 -25.23565 -23.62484 -23.57847 -22.49646 -21.65016 -21.02958 -20.77869 -19.83047 -18.68204 -17.92305 -17.53472 -17.26939 -17.09362 -16.40583 -15.46768 -15.16135 -14.83976 -14.71391 -14.60234 -14.48657 -14.31558 -13.94996 -13.65812 -13.56044 -13.48586 -13.32624 -12.79841 -12.61006 -12.29848 -12.04173 -11.49934 -11.31900 -11.03747 -10.98905 -10.66990 -10.63309 -10.57250 -10.40304 -10.30453 -10.26318 -10.14534 -9.64581 -9.29774 -8.96531 -8.89129 -7.29327 -5.82539 -3.18310 0.20800 1.49700 1.84490 2.58143 2.68036 2.77317 3.01717 3.26495 3.31358 3.38052 3.94796 4.33680 4.45464 4.51848 4.66202 4.74231 4.82970 4.92806 4.97429 5.05577 5.13409 5.32932 5.35416 5.45517 5.48507 5.60011 5.69699 5.71279 5.75194 5.78032 5.94566 6.01582 6.06680 6.15995 6.24317 6.29512 6.33108 6.61053 6.71343 6.78283 6.97533 7.61402 7.64484 7.93891 8.36444 9.15298 9.87245 10.07015 11.36064 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003762 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.882866 B = 7440.852161 C = 9454.194543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.090 0.910 9 N -0.755 5.755 10 C 0.162 3.838 11 C -0.099 4.099 12 C -0.127 4.127 13 C 0.113 3.887 14 N -0.594 5.594 15 C 0.598 3.402 16 O -0.519 6.519 17 C -0.033 4.033 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.062 4.062 21 C 0.609 3.391 22 N -0.839 5.839 23 O -0.519 6.519 24 O -0.145 6.145 25 C 0.088 3.912 26 C -0.128 4.128 27 H 0.260 0.740 28 H 0.360 0.640 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.170 0.830 37 H 0.169 0.831 38 H 0.413 0.587 39 H 0.409 0.591 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.899 -1.492 5.678 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.118 4.118 12 C -0.165 4.165 13 C -0.009 4.009 14 N -0.326 5.326 15 C 0.385 3.615 16 O -0.396 6.396 17 C -0.087 4.087 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.115 4.115 21 C 0.393 3.607 22 N -0.402 5.402 23 O -0.396 6.396 24 O -0.042 6.042 25 C -0.033 4.033 26 C -0.166 4.166 27 H 0.070 0.930 28 H 0.193 0.807 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.187 0.813 37 H 0.186 0.814 38 H 0.245 0.755 39 H 0.239 0.761 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.103 0.897 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.178 -1.924 6.003 23.057 hybrid contribution 0.118 1.501 -0.160 1.515 sum 22.296 -0.423 5.842 23.053 Atomic orbital electron populations 1.69703 1.05123 1.25824 1.57548 1.24685 0.95234 0.97191 1.02107 0.86538 0.79037 0.85052 0.77749 1.21102 1.21744 1.20463 1.19069 0.80680 0.94748 1.42953 0.89263 1.42712 1.04007 1.02170 1.91211 1.20647 0.87819 0.89280 0.98721 1.21387 0.96741 0.96191 0.97489 1.21924 0.93245 0.98009 1.03336 1.21772 0.96319 0.96563 0.86213 1.48073 1.34068 1.24817 1.25661 1.16816 0.80673 0.83404 0.80578 1.90862 1.49998 1.25736 1.73047 1.22506 1.00344 0.87112 0.98733 1.21980 0.99583 1.01259 0.92578 1.21986 0.98830 0.92550 1.01219 1.22522 1.01963 0.98903 0.88103 1.16634 0.79281 0.80874 0.83914 1.43719 1.44670 1.25388 1.26463 1.90928 1.53623 1.74379 1.20624 1.84261 1.54367 1.33108 1.32438 1.22379 0.92831 0.85196 1.02936 1.21893 0.93414 1.02520 0.98741 0.93030 0.80749 0.95354 0.95550 0.90855 0.89994 0.91193 0.90851 0.88709 0.81265 0.81351 0.75502 0.76140 0.87831 0.90629 0.89688 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.97 55.49 0.78 -27.99 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.89 21.03 27.73 -169.99 -4.71 16.32 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -5.96 6.52 56.52 0.37 -5.59 16 7 C -0.24 -6.71 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 9 N -0.76 -16.80 5.12 -59.91 -0.31 -17.11 16 10 C 0.16 2.88 5.65 -4.04 -0.02 2.86 16 11 C -0.10 -1.30 2.19 -90.58 -0.20 -1.50 16 12 C -0.13 -1.37 5.36 -26.60 -0.14 -1.51 16 13 C 0.11 1.14 6.43 -3.71 -0.02 1.12 16 14 N -0.59 -6.47 2.98 -174.35 -0.52 -6.99 16 15 C 0.60 7.22 7.68 -12.58 -0.10 7.12 16 16 O -0.52 -7.43 16.30 5.27 0.09 -7.35 16 17 C -0.03 -0.36 6.87 -36.50 -0.25 -0.61 16 18 C -0.13 -1.27 10.60 -39.50 -0.42 -1.68 16 19 C -0.13 -1.15 10.60 -39.50 -0.42 -1.56 16 20 C -0.06 -0.60 7.14 -36.50 -0.26 -0.86 16 21 C 0.61 6.00 8.08 -12.58 -0.10 5.90 16 22 N -0.84 -5.56 8.87 30.40 0.27 -5.29 16 23 O -0.52 -6.70 17.70 5.27 0.09 -6.61 16 24 O -0.14 -1.39 6.81 4.37 0.03 -1.36 16 25 C 0.09 0.88 6.29 -3.94 -0.02 0.85 16 26 C -0.13 -1.56 5.23 -26.83 -0.14 -1.70 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.36 7.64 4.70 -40.82 -0.19 7.45 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.99 7.02 -51.93 -0.36 0.62 16 36 H 0.17 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 38 H 0.41 2.13 8.93 -40.82 -0.36 1.76 16 39 H 0.41 2.10 8.59 -40.82 -0.35 1.75 16 40 H 0.10 0.96 3.76 -55.39 -0.21 0.75 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -34.30 356.07 -6.94 -41.24 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.67 Total: 8.22 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.35 Total: 1.56 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: 0.22 Total: -57.38 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.21 Total: -15.31 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.30 -6.94 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205655135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.059 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds