Wall clock time and date at job start Tue Mar 31 2020 13:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 120.00037 * 2 1 4 4 H 1.48501 * 109.47111 * 270.00023 * 3 2 1 5 5 H 1.48499 * 109.47385 * 29.99978 * 3 2 1 6 6 H 1.48501 * 109.47573 * 150.00137 * 3 2 1 7 7 C 1.38810 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99793 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99863 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00080 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47103 * 180.02562 * 10 9 7 12 12 C 1.53047 * 109.45733 * 184.99920 * 11 10 9 13 13 C 1.53199 * 109.31075 * 178.61507 * 12 11 10 14 14 N 1.46926 * 108.77125 * 54.63661 * 13 12 11 15 15 C 1.34783 * 120.62533 * 126.36872 * 14 13 12 16 16 O 1.21606 * 120.00145 * 3.98986 * 15 14 13 17 17 C 1.47290 * 119.99614 * 183.98593 * 15 14 13 18 18 C 1.36577 * 125.80303 * 173.09323 * 17 15 14 19 19 C 1.40062 * 106.92500 * 179.77024 * 18 17 15 20 20 C 1.36567 * 106.92505 * 0.37761 * 19 18 17 21 21 C 1.47295 * 125.80335 * 179.88517 * 20 19 18 22 22 N 1.34783 * 119.99749 * 179.71924 * 21 20 19 23 23 O 1.21610 * 120.00125 * 359.71489 * 21 20 19 24 24 O 1.34547 * 108.39074 * 359.61934 * 20 19 18 25 25 C 1.46918 * 118.74401 * 306.64151 * 14 13 12 26 26 C 1.52763 * 109.00920 * 53.30831 * 25 14 13 27 27 H 0.97001 * 119.99471 * 359.97438 * 1 2 3 28 28 H 0.96996 * 119.99893 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.46298 * 60.00535 * 10 9 7 30 30 H 1.09007 * 109.47180 * 300.00858 * 10 9 7 31 31 H 1.08999 * 109.45190 * 304.96638 * 11 10 9 32 32 H 1.08999 * 109.49050 * 58.66984 * 12 11 10 33 33 H 1.08994 * 109.52345 * 298.58507 * 12 11 10 34 34 H 1.09001 * 109.58330 * 294.85290 * 13 12 11 35 35 H 1.09001 * 109.70040 * 174.49408 * 13 12 11 36 36 H 1.08001 * 126.53805 * 0.04242 * 18 17 15 37 37 H 1.08003 * 126.53491 * 180.27582 * 19 18 17 38 38 H 0.97002 * 119.99586 * 179.97438 * 22 21 20 39 39 H 0.96997 * 119.99922 * 359.72169 * 22 21 20 40 40 H 1.09000 * 109.58943 * 173.15028 * 25 14 13 41 41 H 1.09003 * 109.58539 * 293.57003 * 25 14 13 42 42 H 1.09000 * 109.56722 * 185.55213 * 26 25 14 43 43 H 1.08999 * 109.35526 * 65.50370 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0011 11 6 5.6163 -2.1913 0.0009 12 6 6.3803 -3.5116 -0.1237 13 6 7.8848 -3.2250 -0.1584 14 7 8.2422 -2.4303 1.0246 15 6 9.2264 -2.8349 1.8518 16 8 9.8764 -3.8271 1.5839 17 6 9.5146 -2.0752 3.0803 18 6 10.3866 -2.4468 4.0635 19 6 10.3571 -1.4400 5.0367 20 6 9.4620 -0.5009 4.6102 21 6 9.1073 0.7381 5.3233 22 7 8.2087 1.5892 4.7897 23 8 9.6253 0.9932 6.3936 24 8 8.9635 -0.8971 3.4249 25 6 7.5024 -1.1895 1.2920 26 6 6.0059 -1.4959 1.3074 27 1 -0.4849 0.8401 0.0004 28 1 3.8646 -0.3621 -0.0004 29 1 3.8485 -3.0433 -0.8882 30 1 3.8491 -3.0416 0.8918 31 1 5.8656 -1.5466 -0.8419 32 1 6.0850 -4.0173 -1.0430 33 1 6.1506 -4.1474 0.7313 34 1 8.1295 -2.6661 -1.0617 35 1 8.4381 -4.1642 -0.1486 36 1 10.9880 -3.3437 4.0843 37 1 10.9314 -1.4124 5.9510 38 1 7.9748 2.4049 5.2596 39 1 7.7985 1.3876 3.9341 40 1 7.8016 -0.7870 2.2598 41 1 7.7154 -0.4612 0.5095 42 1 5.4441 -0.5672 1.4067 43 1 5.7797 -2.1503 2.1493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205655135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:10 Heat of formation + Delta-G solvation = -60.399663 kcal Electronic energy + Delta-G solvation = -27245.980919 eV Core-core repulsion = 23292.445678 eV Total energy + Delta-G solvation = -3953.535241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.07471 -41.20828 -40.34260 -39.08865 -36.78012 -35.07406 -34.68602 -34.14422 -32.94733 -32.22442 -31.18094 -28.63468 -26.28627 -24.91199 -24.50693 -23.52527 -22.79652 -21.97584 -21.65303 -20.79378 -19.64935 -19.40360 -18.56957 -17.97158 -17.85424 -17.31233 -16.62878 -16.31783 -16.06312 -15.78971 -15.52991 -15.52106 -15.40220 -14.98473 -14.95369 -14.39754 -14.38082 -14.27337 -14.22263 -13.87109 -13.48901 -13.28557 -13.00138 -12.78157 -12.19416 -12.14441 -11.87609 -11.87297 -11.67487 -11.62636 -11.42038 -11.31390 -11.20306 -10.93465 -10.92916 -10.10878 -9.72722 -9.27386 -8.00673 -5.34758 -0.56819 0.74118 1.06065 1.38127 1.45322 1.52634 1.76657 1.92206 1.95556 2.35300 2.51475 3.17725 3.30838 3.56258 3.62377 3.76631 3.82826 3.84125 4.02897 4.13796 4.16795 4.33307 4.33778 4.49556 4.56758 4.68704 4.71057 4.80476 4.87376 4.93194 5.04717 5.06338 5.09038 5.12391 5.21487 5.38171 5.45978 5.51391 5.68659 5.77625 6.10030 6.19305 6.22889 6.76850 6.99725 7.10667 7.85758 8.07108 9.21172 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011694 B = 0.003762 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.882866 B = 7440.852161 C = 9454.194543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.237 1.237 7 C -0.238 4.238 8 H 0.050 0.950 9 N -0.754 5.754 10 C 0.159 3.841 11 C -0.089 4.089 12 C -0.119 4.119 13 C 0.115 3.885 14 N -0.594 5.594 15 C 0.598 3.402 16 O -0.547 6.547 17 C -0.050 4.050 18 C -0.127 4.127 19 C -0.127 4.127 20 C -0.065 4.065 21 C 0.609 3.391 22 N -0.821 5.821 23 O -0.555 6.555 24 O -0.139 6.139 25 C 0.094 3.906 26 C -0.124 4.124 27 H 0.257 0.743 28 H 0.369 0.631 29 H 0.024 0.976 30 H 0.016 0.984 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.181 0.819 37 H 0.182 0.818 38 H 0.422 0.578 39 H 0.419 0.581 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.362 -0.208 5.492 24.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.161 1.161 7 C -0.369 4.369 8 H 0.068 0.932 9 N -0.400 5.400 10 C 0.033 3.967 11 C -0.108 4.108 12 C -0.157 4.157 13 C -0.006 4.006 14 N -0.324 5.324 15 C 0.386 3.614 16 O -0.428 6.428 17 C -0.103 4.103 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.118 4.118 21 C 0.393 3.607 22 N -0.384 5.384 23 O -0.435 6.435 24 O -0.036 6.036 25 C -0.027 4.027 26 C -0.163 4.163 27 H 0.066 0.934 28 H 0.203 0.797 29 H 0.042 0.958 30 H 0.034 0.966 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.199 0.801 37 H 0.199 0.801 38 H 0.255 0.745 39 H 0.250 0.750 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 24.661 -0.649 5.790 25.340 hybrid contribution -0.731 0.986 -0.108 1.233 sum 23.930 0.337 5.681 24.597 Atomic orbital electron populations 1.69914 1.07483 1.26772 1.59683 1.25612 0.96158 1.01691 1.02453 0.85360 0.79093 0.78848 0.78200 1.20518 1.22596 1.16102 1.19030 0.83032 0.93310 1.41503 0.93239 1.42650 1.02191 1.04222 1.90926 1.20800 0.90763 0.87309 0.97817 1.21288 0.93226 0.97742 0.98529 1.21849 0.93608 0.96639 1.03637 1.21807 0.95276 0.96865 0.86687 1.48156 1.33691 1.25029 1.25565 1.16941 0.80575 0.83096 0.80827 1.90844 1.51126 1.26987 1.73802 1.22375 1.01379 0.87724 0.98844 1.22201 0.98956 1.01528 0.92097 1.22214 0.98706 0.92183 1.01586 1.22610 1.02065 0.99046 0.88116 1.16661 0.79451 0.81098 0.83491 1.43623 1.43249 1.24981 1.26585 1.90914 1.55189 1.75198 1.22164 1.84210 1.54289 1.32751 1.32385 1.22400 0.90888 0.85115 1.04309 1.21827 0.95021 1.01704 0.97700 0.93395 0.79734 0.95837 0.96622 0.89737 0.88820 0.92073 0.88931 0.88978 0.80128 0.80051 0.74470 0.74981 0.86942 0.88609 0.90452 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.45 13.97 21.65 0.30 -62.14 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.96 42.47 27.73 68.60 1.90 44.37 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 6 H -0.24 -8.79 6.52 99.48 0.65 -8.15 16 7 C -0.24 -13.20 10.47 84.03 0.88 -12.32 16 8 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 9 N -0.75 -32.59 5.12 -343.45 -1.76 -34.35 16 10 C 0.16 5.49 5.65 86.38 0.49 5.98 16 11 C -0.09 -2.11 2.19 -10.77 -0.02 -2.13 16 12 C -0.12 -2.30 5.36 30.68 0.16 -2.14 16 13 C 0.11 2.02 6.43 86.36 0.55 2.57 16 14 N -0.59 -11.38 2.98 -823.77 -2.45 -13.84 16 15 C 0.60 13.30 7.68 86.62 0.67 13.96 16 16 O -0.55 -14.98 16.30 -4.05 -0.07 -15.04 16 17 C -0.05 -0.97 6.87 24.26 0.17 -0.80 16 18 C -0.13 -2.19 10.60 22.32 0.24 -1.95 16 19 C -0.13 -2.08 10.60 22.32 0.24 -1.85 16 20 C -0.07 -1.14 7.14 24.26 0.17 -0.97 16 21 C 0.61 10.89 8.08 86.62 0.70 11.59 16 22 N -0.82 -8.88 8.87 -175.98 -1.56 -10.44 16 23 O -0.55 -13.70 17.70 -4.06 -0.07 -13.78 16 24 O -0.14 -2.34 6.81 -7.29 -0.05 -2.39 16 25 C 0.09 1.56 6.29 86.22 0.54 2.11 16 26 C -0.12 -2.71 5.23 30.53 0.16 -2.55 16 27 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.37 14.58 4.70 -92.71 -0.44 14.14 16 29 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.73 7.02 -2.39 -0.02 1.72 16 36 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 37 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.42 3.34 8.93 -92.71 -0.83 2.51 16 39 H 0.42 3.03 8.59 -92.71 -0.80 2.23 16 40 H 0.11 1.71 3.76 -57.13 -0.21 1.50 16 41 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.83 7.15 -2.39 -0.02 1.81 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -75.66 356.07 0.41 -75.25 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.24 Total: 24.27 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.41 Total: 8.08 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -5.47 Total: -120.77 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.19 Total: -31.21 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.90 Total: 44.37 kcal Total: -75.66 0.41 -75.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205655135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.850 kcal (2) G-P(sol) polarization free energy of solvation -75.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds