Wall clock time and date at job start Tue Mar 31 2020 12:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86796 * 119.99883 * 2 1 4 4 H 1.48495 * 109.47495 * 264.66407 * 3 2 1 5 5 H 1.48501 * 109.47133 * 24.66664 * 3 2 1 6 6 H 1.48500 * 109.47148 * 144.66045 * 3 2 1 7 7 C 1.37875 * 119.99750 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00362 * 4.98642 * 7 2 1 9 9 C 1.50697 * 119.99738 * 184.97733 * 7 2 1 10 10 H 1.09001 * 109.47348 * 25.14549 * 9 7 2 11 11 C 1.50707 * 109.47148 * 145.14156 * 9 7 2 12 12 O 1.21280 * 119.99853 * 119.99796 * 11 9 7 13 13 N 1.34771 * 119.99808 * 300.00497 * 11 9 7 14 14 C 1.47587 * 134.48950 * 179.97438 * 13 11 9 15 15 C 1.53942 * 86.11756 * 204.63965 * 14 13 11 16 16 C 1.50695 * 113.74741 * 222.04797 * 15 14 13 17 17 C 1.38238 * 119.99528 * 59.72704 * 16 15 14 18 18 C 1.38241 * 119.99403 * 179.76855 * 17 16 15 19 19 C 1.38232 * 120.00302 * 0.50979 * 18 17 16 20 20 C 1.38237 * 119.99634 * 359.74381 * 19 18 17 21 21 C 1.38229 * 120.00266 * 0.02562 * 20 19 18 22 22 C 1.47585 * 134.49420 * 359.97438 * 13 11 9 23 23 C 1.50696 * 109.47522 * 265.14359 * 9 7 2 24 24 C 1.38229 * 120.00111 * 305.02944 * 23 9 7 25 25 C 1.38241 * 120.00305 * 179.78662 * 24 23 9 26 26 C 1.38231 * 119.99631 * 0.44348 * 25 24 23 27 27 C 1.38235 * 120.00098 * 359.80567 * 26 25 24 28 28 C 1.38236 * 120.00236 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00073 * 359.97438 * 1 2 3 30 30 H 1.09001 * 113.76265 * 90.34474 * 14 13 11 31 31 H 1.08989 * 113.77146 * 318.94666 * 14 13 11 32 32 H 1.09006 * 113.74042 * 90.74088 * 15 14 13 33 33 H 1.07992 * 120.00142 * 0.02562 * 17 16 15 34 34 H 1.08003 * 119.99270 * 180.23213 * 18 17 16 35 35 H 1.07998 * 120.00014 * 179.72514 * 19 18 17 36 36 H 1.08007 * 119.99377 * 179.97438 * 20 19 18 37 37 H 1.08000 * 120.00133 * 179.97438 * 21 20 19 38 38 H 1.08992 * 113.76889 * 41.05936 * 22 13 11 39 39 H 1.08998 * 113.87098 * 269.67122 * 22 13 11 40 40 H 1.07998 * 120.00275 * 359.97438 * 24 23 9 41 41 H 1.08000 * 120.00091 * 180.27048 * 25 24 23 42 42 H 1.07998 * 120.00419 * 179.83593 * 26 25 24 43 43 H 1.08009 * 120.00118 * 180.02562 * 27 26 25 44 44 H 1.07995 * 120.00225 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6094 1.9814 -1.3939 5 1 1.3948 2.6826 0.5843 6 1 3.4857 1.4754 0.8098 7 6 2.0045 -1.1941 -0.0005 8 1 1.4676 -2.1276 -0.0822 9 6 3.5072 -1.1966 0.1127 10 1 3.8353 -0.2869 0.6158 11 6 3.9491 -2.3978 0.9084 12 8 4.6847 -3.2207 0.4060 13 7 3.5265 -2.5575 2.1781 14 6 3.7488 -3.5773 3.2216 15 6 2.4039 -3.1160 3.8116 16 6 2.4090 -2.9973 5.3138 17 6 3.2916 -2.1342 5.9359 18 6 3.2930 -2.0217 7.3137 19 6 2.4191 -2.7801 8.0700 20 6 1.5401 -3.6470 7.4481 21 6 1.5354 -3.7560 6.0701 22 6 2.6557 -1.7830 3.0836 23 6 4.1148 -1.2555 -1.2651 24 6 3.7600 -2.2703 -2.1341 25 6 4.3140 -2.3219 -3.3996 26 6 5.2297 -1.3639 -3.7927 27 6 5.5884 -0.3520 -2.9219 28 6 5.0310 -0.2978 -1.6581 29 1 -0.4850 0.8400 0.0004 30 1 4.6046 -3.3693 3.8638 31 1 3.7361 -4.6003 2.8459 32 1 1.5449 -3.6686 3.4307 33 1 3.9772 -1.5447 5.3452 34 1 3.9800 -1.3446 7.7994 35 1 2.4232 -2.6955 9.1466 36 1 0.8575 -4.2398 8.0391 37 1 0.8489 -4.4336 5.5843 38 1 1.7701 -1.3736 2.5977 39 1 3.1887 -1.0474 3.6859 40 1 3.0477 -3.0211 -1.8255 41 1 4.0335 -3.1123 -4.0800 42 1 5.6646 -1.4056 -4.7804 43 1 6.3036 0.3967 -3.2292 44 1 5.3115 0.4924 -0.9776 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001454667421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:08 Heat of formation + Delta-G solvation = 50.513800 kcal Electronic energy + Delta-G solvation = -26263.167072 eV Core-core repulsion = 22725.290663 eV Total energy + Delta-G solvation = -3537.876409 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29352 -39.03835 -38.16483 -36.75032 -33.64506 -31.78827 -31.47535 -30.92446 -30.12616 -28.66615 -27.17436 -25.72053 -23.84044 -23.06340 -22.44916 -21.84579 -20.86767 -19.82130 -18.25717 -17.22291 -17.02666 -16.21212 -16.10303 -15.60272 -15.15570 -14.80233 -14.58915 -14.51254 -14.24186 -13.67229 -13.43583 -13.13812 -13.08112 -12.73250 -12.63949 -12.47124 -12.33515 -12.24539 -12.03467 -11.85595 -11.65028 -11.17970 -11.03004 -10.93895 -10.84051 -10.68975 -10.46672 -10.21693 -9.91999 -9.53254 -8.98033 -8.93954 -8.66718 -8.64034 -8.14004 -8.03734 -7.79872 -6.31363 -4.33754 1.31458 1.38123 2.15699 2.22137 3.13519 3.21406 3.26569 3.48579 3.57276 3.72310 4.21058 4.60960 4.78737 4.82612 4.89164 4.96681 5.00057 5.10360 5.19856 5.39646 5.47970 5.52426 5.57142 5.62127 5.66595 5.70815 5.76163 5.91229 5.96569 5.98097 6.05180 6.23480 6.27669 6.33145 6.39440 6.47263 6.47776 6.51263 6.60859 6.69761 6.79055 6.86153 6.97914 7.17695 7.25918 7.28046 7.59683 7.80714 8.20220 8.40360 8.68716 9.06883 9.26826 10.79360 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015928 B = 0.003729 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.541153 B = 7506.448361 C = 8321.718991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.086 3.914 3 Si 0.862 3.138 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.082 0.918 9 C 0.024 3.976 10 H 0.071 0.929 11 C 0.558 3.442 12 O -0.561 6.561 13 N -0.635 5.635 14 C 0.115 3.885 15 C -0.089 4.089 16 C -0.064 4.064 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.121 4.121 21 C -0.112 4.112 22 C 0.114 3.886 23 C -0.028 4.028 24 C -0.073 4.073 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.128 4.128 28 C -0.137 4.137 29 H 0.269 0.731 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.075 0.925 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -2.987 10.904 12.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.118 4.118 3 Si 0.689 3.311 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.541 4.541 8 H 0.100 0.900 9 C 0.002 3.998 10 H 0.089 0.911 11 C 0.351 3.649 12 O -0.440 6.440 13 N -0.370 5.370 14 C -0.008 4.008 15 C -0.108 4.108 16 C -0.065 4.065 17 C -0.134 4.134 18 C -0.137 4.137 19 C -0.147 4.147 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.009 4.009 23 C -0.029 4.029 24 C -0.091 4.091 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.147 4.147 28 C -0.155 4.155 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.166 -3.268 10.393 12.057 hybrid contribution 0.302 1.068 -0.007 1.110 sum 5.468 -2.200 10.386 11.942 Atomic orbital electron populations 1.69860 1.06057 1.27440 1.48458 1.24935 0.94671 0.98551 0.93657 0.87083 0.80220 0.84037 0.79787 1.19136 1.21043 1.18795 1.20470 0.86167 0.95263 1.52191 0.90023 1.18527 0.98464 0.93627 0.89158 0.91081 1.20905 0.77037 0.87714 0.79274 1.90603 1.37752 1.46188 1.69469 1.49679 1.50527 1.26154 1.10678 1.23095 0.95631 0.94430 0.87660 1.22227 0.99249 0.99353 0.89993 1.19746 0.95776 0.96254 0.94727 1.21100 0.98982 0.98665 0.94609 1.21117 0.99147 0.99502 0.93944 1.21113 0.96651 0.97257 0.99631 1.21123 0.99060 0.98988 0.94703 1.21094 0.98797 0.99342 0.93773 1.23317 0.95433 0.93499 0.88616 1.20080 0.92416 0.93327 0.97087 1.20843 0.98026 0.97615 0.92590 1.21035 0.98149 0.98962 0.96564 1.20860 0.99848 0.96330 0.99087 1.20882 1.00678 0.98712 0.94389 1.20968 0.98205 0.99744 0.96618 0.92127 0.90567 0.90507 0.87161 0.85846 0.86258 0.86453 0.86277 0.85919 0.87210 0.90736 0.86524 0.87090 0.87299 0.87249 0.87472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 13.96 55.43 0.77 -23.63 16 2 C 0.09 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.86 19.86 27.17 -169.99 -4.62 15.24 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.68 6.06 56.52 0.34 -5.33 16 7 C -0.50 -12.80 6.74 -34.44 -0.23 -13.03 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.02 0.55 1.73 -94.08 -0.16 0.38 16 10 H 0.07 1.63 4.89 -51.93 -0.25 1.38 16 11 C 0.56 12.61 7.27 -10.98 -0.08 12.53 16 12 O -0.56 -13.89 16.10 5.56 0.09 -13.80 16 13 N -0.64 -12.05 3.56 -178.41 -0.64 -12.69 16 14 C 0.11 1.73 8.30 -2.97 -0.02 1.71 16 15 C -0.09 -1.24 4.17 -90.84 -0.38 -1.61 16 16 C -0.06 -0.79 5.30 -104.63 -0.55 -1.34 16 17 C -0.12 -1.34 8.62 -39.58 -0.34 -1.68 16 18 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 19 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 20 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 21 C -0.11 -1.25 9.71 -39.59 -0.38 -1.64 16 22 C 0.11 1.89 7.65 -2.97 -0.02 1.86 16 23 C -0.03 -0.64 4.08 -104.63 -0.43 -1.07 16 24 C -0.07 -1.61 8.25 -39.58 -0.33 -1.94 16 25 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.14 -2.55 10.05 -39.58 -0.40 -2.95 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 28 C -0.14 -2.85 9.45 -39.58 -0.37 -3.23 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.08 1.03 7.74 -51.93 -0.40 0.63 16 31 H 0.08 1.16 8.14 -51.94 -0.42 0.73 16 32 H 0.11 1.54 8.10 -51.93 -0.42 1.12 16 33 H 0.12 1.37 6.66 -52.49 -0.35 1.02 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.11 2.11 7.07 -51.93 -0.37 1.74 16 39 H 0.07 1.09 6.31 -51.93 -0.33 0.76 16 40 H 0.12 2.68 7.93 -52.49 -0.42 2.26 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 43 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.11 2.07 7.95 -52.49 -0.42 1.66 16 LS Contribution 365.66 15.07 5.51 5.51 Total: -1.00 -30.43 365.66 -10.63 -41.05 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.95 Total: 8.69 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -5.79 Total: -20.37 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.14 Total: -36.32 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.62 Total: 15.24 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.43 -10.63 -41.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001454667421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.567 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds