Wall clock time and date at job start Tue Mar 31 2020 13:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00209 * 2 1 4 4 H 1.48500 * 109.47452 * 264.90597 * 3 2 1 5 5 H 1.48505 * 109.46911 * 24.90925 * 3 2 1 6 6 H 1.48506 * 109.46760 * 144.90736 * 3 2 1 7 7 C 1.37875 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00469 * 4.89089 * 7 2 1 9 9 C 1.50702 * 120.00007 * 184.89073 * 7 2 1 10 10 H 1.09001 * 109.46910 * 54.76382 * 9 7 2 11 11 N 1.46503 * 109.47307 * 294.76611 * 9 7 2 12 12 C 1.34765 * 120.00379 * 154.99940 * 11 9 7 13 13 O 1.21592 * 120.00094 * 359.97438 * 12 11 9 14 14 N 1.34772 * 120.00268 * 179.97438 * 12 11 9 15 15 C 1.46504 * 120.00166 * 179.97438 * 14 12 11 16 16 C 1.54208 * 111.81552 * 298.86024 * 15 14 12 17 17 C 1.56439 * 103.56468 * 259.57385 * 16 15 14 18 18 C 1.54864 * 103.23962 * 322.83923 * 17 16 15 19 19 C 1.54176 * 104.26096 * 37.77979 * 18 17 16 20 20 H 1.09001 * 111.67771 * 97.73587 * 19 18 17 21 21 N 1.47819 * 109.09394 * 221.08191 * 19 18 17 22 22 C 1.48513 * 105.85248 * 89.00909 * 21 19 18 23 23 C 1.54545 * 111.84426 * 61.01305 * 15 14 12 24 24 C 1.53004 * 109.47278 * 174.76230 * 9 7 2 25 25 F 1.39896 * 109.47103 * 185.01355 * 24 9 7 26 26 F 1.39895 * 109.47165 * 305.01767 * 24 9 7 27 27 F 1.39898 * 109.46944 * 65.01708 * 24 9 7 28 28 H 0.97008 * 119.99752 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99493 * 334.99514 * 11 9 7 30 30 H 0.96996 * 120.00500 * 0.02562 * 14 12 11 31 31 H 1.09000 * 110.46043 * 19.72949 * 16 15 14 32 32 H 1.08995 * 110.46161 * 142.31323 * 16 15 14 33 33 H 1.09002 * 110.87978 * 204.19591 * 17 16 15 34 34 H 1.09003 * 110.32408 * 81.22705 * 17 16 15 35 35 H 1.08992 * 110.47402 * 279.08863 * 18 17 16 36 36 H 1.09001 * 110.58476 * 156.52780 * 18 17 16 37 37 H 1.00894 * 110.99771 * 209.54364 * 21 19 18 38 38 H 1.09009 * 110.66886 * 281.07587 * 22 21 19 39 39 H 1.08997 * 110.81195 * 158.00823 * 22 21 19 40 40 H 1.09001 * 110.70430 * 261.70982 * 23 15 14 41 41 H 1.08999 * 110.70379 * 24.93220 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6044 1.9843 -1.3945 5 1 1.3970 2.6813 0.5897 6 1 3.4888 1.4734 0.8049 7 6 2.0044 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0807 9 6 3.5073 -1.1966 0.1107 10 1 3.8068 -0.6410 0.9994 11 7 4.0861 -0.5653 -1.0779 12 6 5.3075 0.0006 -1.0132 13 8 5.9290 -0.0123 0.0318 14 7 5.8401 0.5809 -2.1068 15 6 7.1677 1.1965 -2.0363 16 6 7.2094 2.3536 -1.0177 17 6 7.0959 3.6329 -1.9108 18 6 7.9229 3.2632 -3.1668 19 6 7.6102 1.7719 -3.4020 20 1 6.8360 1.6371 -4.1574 21 7 8.8551 1.0708 -3.7810 22 6 9.4748 0.6268 -2.5064 23 6 8.2593 0.1684 -1.6626 24 6 4.0085 -2.6383 0.2177 25 9 5.3903 -2.6367 0.4356 26 9 3.3687 -3.2763 1.2857 27 9 3.7245 -3.3200 -0.9705 28 1 -0.4850 0.8401 0.0004 29 1 3.5902 -0.5547 -1.9115 30 1 5.3443 0.5916 -2.9404 31 1 6.3816 2.2712 -0.3134 32 1 8.1621 2.3609 -0.4883 33 1 7.5257 4.4983 -1.4063 34 1 6.0549 3.8193 -2.1748 35 1 8.9870 3.4044 -2.9778 36 1 7.6064 3.8588 -4.0231 37 1 8.6585 0.2837 -4.3809 38 1 9.9903 1.4551 -2.0202 39 1 10.1596 -0.2038 -2.6774 40 1 8.4881 0.2190 -0.5981 41 1 7.9525 -0.8389 -1.9444 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580047310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:12 Heat of formation + Delta-G solvation = -182.386294 kcal Electronic energy + Delta-G solvation = -29611.411409 eV Core-core repulsion = 25110.729690 eV Total energy + Delta-G solvation = -4500.681719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.07887 -46.58605 -46.57016 -40.70708 -38.74525 -34.98984 -34.20539 -33.40920 -32.46997 -30.44439 -28.88158 -26.70594 -26.28027 -25.01650 -21.98304 -21.78347 -20.97785 -20.02851 -19.27387 -18.32457 -17.64251 -17.36120 -17.27819 -16.75744 -16.42587 -15.64031 -14.92701 -14.67229 -14.53364 -14.25092 -14.17231 -13.93619 -13.49087 -13.46452 -13.05462 -13.03281 -12.96558 -12.77027 -12.75348 -12.67524 -12.15318 -11.96484 -11.82941 -11.65046 -11.40961 -11.18741 -11.11379 -10.86945 -10.77825 -10.63688 -10.54559 -10.22258 -9.85038 -9.62037 -9.02705 -8.88006 -8.78030 -8.33763 -6.52856 -4.66825 2.97749 3.12598 3.19657 3.30120 3.60115 3.91218 3.94172 4.10879 4.42886 4.47070 4.58445 4.82978 4.96570 5.05198 5.09283 5.12323 5.20190 5.23047 5.26455 5.33253 5.42425 5.51699 5.58501 5.67042 5.87690 5.89471 5.94668 6.05530 6.19589 6.27483 6.31223 6.38257 6.56139 6.84055 6.90061 7.13316 7.15331 7.41268 7.89902 8.50238 8.58003 9.00816 9.13413 10.55178 Molecular weight = 321.14amu Principal moments of inertia in cm(-1) A = 0.015184 B = 0.005468 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.604291 B = 5119.642262 C = 6350.305919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.095 3.905 3 Si 0.885 3.115 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.256 1.256 7 C -0.537 4.537 8 H 0.095 0.905 9 C 0.223 3.777 10 H 0.091 0.909 11 N -0.734 5.734 12 C 0.692 3.308 13 O -0.581 6.581 14 N -0.741 5.741 15 C 0.166 3.834 16 C -0.120 4.120 17 C -0.130 4.130 18 C -0.104 4.104 19 C 0.069 3.931 20 H 0.085 0.915 21 N -0.665 5.665 22 C 0.042 3.958 23 C -0.152 4.152 24 C 0.441 3.559 25 F -0.193 7.193 26 F -0.185 7.185 27 F -0.192 7.192 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.392 0.608 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.337 0.663 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.901 4.433 -7.412 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.114 4.114 3 Si 0.712 3.288 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.181 1.181 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.119 3.881 10 H 0.109 0.891 11 N -0.390 5.390 12 C 0.393 3.607 13 O -0.458 6.458 14 N -0.397 5.397 15 C 0.077 3.923 16 C -0.158 4.158 17 C -0.168 4.168 18 C -0.142 4.142 19 C -0.043 4.043 20 H 0.103 0.897 21 N -0.291 5.291 22 C -0.087 4.087 23 C -0.192 4.192 24 C 0.385 3.615 25 F -0.174 7.174 26 F -0.166 7.166 27 F -0.174 7.174 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.225 0.775 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.733 5.066 -6.550 16.900 hybrid contribution -0.771 -0.245 -0.530 0.967 sum 13.962 4.821 -7.080 16.380 Atomic orbital electron populations 1.69878 1.06420 1.28288 1.44966 1.24937 0.94789 0.99387 0.92315 0.86726 0.80429 0.82290 0.79357 1.19918 1.21710 1.18060 1.20822 0.85991 0.96459 1.54181 0.88753 1.20157 0.95608 0.83915 0.88430 0.89132 1.46906 1.16594 1.59842 1.15672 1.16389 0.81944 0.78411 0.83944 1.90880 1.61767 1.64404 1.28795 1.45282 1.19121 1.62671 1.12637 1.21779 0.82043 0.92660 0.95786 1.22951 1.03051 0.92672 0.97161 1.22829 1.00141 0.97801 0.96020 1.22256 1.00810 0.93563 0.97599 1.23032 0.91518 0.95311 0.94393 0.89737 1.62789 1.22444 1.29103 1.14812 1.23119 0.96362 0.99832 0.89437 1.23425 0.94801 0.98855 1.02155 1.21563 0.74489 0.92497 0.72967 1.93146 1.32498 1.97160 1.94626 1.93106 1.81961 1.84261 1.57296 1.93072 1.93397 1.82817 1.48075 0.91560 0.76898 0.77467 0.90058 0.91043 0.91418 0.91700 0.90530 0.91441 0.84761 0.90115 0.90630 0.89666 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.70 13.96 55.43 0.77 -22.92 16 2 C 0.10 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.89 20.26 25.78 -169.99 -4.38 15.88 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.12 6.57 56.52 0.37 -5.75 16 7 C -0.54 -13.68 8.65 -34.44 -0.30 -13.98 16 8 H 0.09 2.63 7.95 -52.48 -0.42 2.21 16 9 C 0.22 5.10 1.42 -69.08 -0.10 5.00 16 10 H 0.09 2.23 6.52 -51.93 -0.34 1.89 16 11 N -0.73 -14.75 2.89 -59.81 -0.17 -14.92 16 12 C 0.69 13.37 7.05 -86.93 -0.61 12.76 16 13 O -0.58 -12.86 12.82 5.28 0.07 -12.79 16 14 N -0.74 -11.16 5.24 -50.26 -0.26 -11.42 16 15 C 0.17 2.20 0.87 -129.50 -0.11 2.09 16 16 C -0.12 -1.67 5.65 -24.25 -0.14 -1.81 16 17 C -0.13 -1.47 6.93 -23.90 -0.17 -1.64 16 18 C -0.10 -1.04 6.44 -25.13 -0.16 -1.20 16 19 C 0.07 0.73 3.95 -65.72 -0.26 0.47 16 20 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 21 N -0.67 -6.56 7.03 -102.21 -0.72 -7.27 16 22 C 0.04 0.43 7.38 -1.93 -0.01 0.41 16 23 C -0.15 -2.01 5.01 -24.92 -0.12 -2.13 16 24 C 0.44 9.76 2.79 37.16 0.10 9.86 16 25 F -0.19 -4.25 15.83 2.25 0.04 -4.22 16 26 F -0.18 -4.16 16.86 2.25 0.04 -4.12 16 27 F -0.19 -4.12 16.97 2.25 0.04 -4.08 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.40 7.30 8.60 -40.82 -0.35 6.95 16 30 H 0.39 4.96 8.30 -40.82 -0.34 4.62 16 31 H 0.08 1.42 6.71 -51.93 -0.35 1.08 16 32 H 0.07 0.94 7.54 -51.93 -0.39 0.55 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.77 7.90 -51.93 -0.41 0.36 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.34 2.99 8.92 -39.29 -0.35 2.64 16 38 H 0.08 0.80 8.11 -51.92 -0.42 0.38 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 41 H 0.07 1.00 8.11 -51.93 -0.42 0.57 16 LS Contribution 334.52 15.07 5.04 5.04 Total: -1.00 -28.95 334.52 -6.96 -35.91 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.43 Total: 12.73 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: -1.98 Total: 12.20 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.38 Total: -56.54 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.07 Total: -12.79 kcal Atomic # 9 Polarization: -12.54 SS G_CDS: 0.11 Total: -12.42 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.38 Total: 15.88 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.95 -6.96 -35.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580047310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.478 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds