Wall clock time and date at job start Tue Mar 31 2020 12:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99828 * 2 1 4 4 H 1.48495 * 109.47330 * 270.00435 * 3 2 1 5 5 H 1.48508 * 109.47079 * 30.00568 * 3 2 1 6 6 H 1.48501 * 109.46925 * 150.00022 * 3 2 1 7 7 C 1.37871 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00220 * 179.97438 * 7 2 1 10 10 H 1.09004 * 110.53710 * 57.38241 * 9 7 2 11 11 C 1.54270 * 110.48204 * 294.77859 * 9 7 2 12 12 C 1.54093 * 106.61762 * 217.59727 * 11 9 7 13 13 C 1.54261 * 106.49289 * 0.17313 * 12 11 9 14 14 H 1.08999 * 110.49037 * 264.70684 * 13 12 11 15 15 N 1.46906 * 110.48318 * 142.19652 * 13 12 11 16 16 C 1.46895 * 111.00018 * 88.24644 * 15 13 12 17 17 H 1.09009 * 109.46664 * 324.99407 * 16 15 13 18 18 C 1.52998 * 109.46929 * 205.00103 * 16 15 13 19 19 C 1.50695 * 109.47466 * 64.99562 * 18 16 15 20 20 C 1.38242 * 119.97636 * 90.00013 * 19 18 16 21 21 C 1.38205 * 120.02917 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.97060 * 359.97438 * 21 20 19 23 23 F 1.35093 * 120.02496 * 179.97438 * 22 21 20 24 24 C 1.38458 * 119.95069 * 0.02562 * 22 21 20 25 25 C 1.38202 * 119.97524 * 0.02562 * 24 22 21 26 26 C 1.50699 * 109.47756 * 84.99417 * 16 15 13 27 27 O 1.20820 * 119.99599 * 0.02562 * 26 16 15 28 28 O 1.34229 * 120.00241 * 179.97438 * 26 16 15 29 29 C 1.54888 * 110.48828 * 180.02562 * 9 7 2 30 30 H 0.97004 * 120.00275 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.03281 * 336.99210 * 11 9 7 32 32 H 1.09006 * 110.03493 * 98.37696 * 11 9 7 33 33 H 1.08996 * 110.15752 * 240.88228 * 12 11 9 34 34 H 1.08999 * 110.00258 * 119.38532 * 12 11 9 35 35 H 1.00895 * 111.00304 * 324.28223 * 15 13 12 36 36 H 1.09006 * 109.47154 * 304.99290 * 18 16 15 37 37 H 1.09003 * 109.47073 * 184.99414 * 18 16 15 38 38 H 1.07998 * 119.98964 * 0.02562 * 20 19 18 39 39 H 1.07996 * 120.01353 * 179.70057 * 21 20 19 40 40 H 1.07997 * 120.01365 * 180.02562 * 24 22 21 41 41 H 1.07994 * 119.99127 * 179.97438 * 25 24 22 42 42 H 0.96696 * 116.99678 * 180.02562 * 28 26 16 43 43 H 1.09003 * 110.75598 * 38.31025 * 29 9 7 44 44 H 1.08998 * 110.75562 * 274.93186 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8943 -0.6440 0.8586 11 6 4.0509 -0.5881 -1.3133 12 6 5.3009 -1.4045 -1.6947 13 6 5.4720 -2.4796 -0.6017 14 1 6.1718 -2.1396 0.1616 15 7 5.9312 -3.7441 -1.1919 16 6 7.3978 -3.7902 -1.2623 17 1 7.7831 -2.7918 -1.4696 18 6 7.8248 -4.7437 -2.3800 19 6 7.3789 -4.1914 -3.7093 20 6 8.2129 -3.3509 -4.4229 21 6 7.8048 -2.8434 -5.6419 22 6 6.5603 -3.1774 -6.1486 23 9 6.1601 -2.6815 -7.3398 24 6 5.7259 -4.0193 -5.4330 25 6 6.1357 -4.5248 -4.2138 26 6 7.9489 -4.2784 0.0525 27 8 7.1971 -4.5596 0.9555 28 8 9.2750 -4.4019 0.2201 29 6 4.0536 -2.6450 -0.0023 30 1 -0.4851 0.8401 0.0004 31 1 3.2982 -0.6665 -2.0978 32 1 4.3214 0.4565 -1.1588 33 1 6.1777 -0.7578 -1.7228 34 1 5.1547 -1.8786 -2.6652 35 1 5.5207 -3.8885 -2.1021 36 1 7.3666 -5.7197 -2.2199 37 1 8.9100 -4.8466 -2.3750 38 1 9.1837 -3.0908 -4.0277 39 1 8.4545 -2.1829 -6.1969 40 1 4.7551 -4.2809 -5.8275 41 1 5.4849 -5.1811 -3.6553 42 1 9.5810 -4.7192 1.0807 43 1 3.4394 -3.2863 -0.6344 44 1 4.1071 -3.0382 1.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:01 Heat of formation + Delta-G solvation = -118.599555 kcal Electronic energy + Delta-G solvation = -27459.365037 eV Core-core repulsion = 23483.386097 eV Total energy + Delta-G solvation = -3975.978939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.08659 -40.58915 -39.46643 -38.01132 -36.12434 -35.38650 -32.73563 -31.62492 -31.40022 -29.22157 -28.24690 -26.47110 -25.03212 -23.45238 -23.16528 -21.79028 -20.83405 -19.92985 -19.09174 -18.08857 -17.91075 -16.83460 -16.78735 -16.49983 -15.99310 -15.76629 -15.62955 -15.35213 -14.94580 -14.38368 -14.22418 -14.11724 -13.80503 -13.55544 -13.33594 -13.09095 -12.59481 -12.49177 -12.33902 -12.23245 -11.94058 -11.90139 -11.54146 -11.48370 -11.23293 -11.00626 -10.75371 -10.45018 -10.27438 -10.06328 -9.96998 -9.66772 -9.41234 -9.36330 -8.92430 -8.83795 -8.50844 -8.27786 -6.02099 -3.99989 0.80529 0.93722 2.22007 2.83569 3.28124 3.31195 3.39942 3.42067 4.01748 4.10581 4.37983 4.44503 4.46474 4.60751 4.67519 4.87588 4.96560 5.00528 5.21752 5.23680 5.32942 5.37504 5.42512 5.56384 5.59985 5.63724 5.75969 5.85434 5.93637 5.96094 6.18516 6.24669 6.37040 6.43695 6.46646 6.59499 6.60747 6.69239 6.84145 6.97212 7.19238 7.27821 7.43452 7.62164 7.85057 7.92301 8.60289 9.03245 9.61437 11.11378 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.004459 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.836096 B = 6277.917629 C = 8305.744726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.265 1.265 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.009 3.991 10 H 0.030 0.970 11 C -0.126 4.126 12 C -0.147 4.147 13 C 0.082 3.918 14 H 0.072 0.928 15 N -0.663 5.663 16 C 0.103 3.897 17 H 0.084 0.916 18 C -0.078 4.078 19 C -0.100 4.100 20 C -0.084 4.084 21 C -0.152 4.152 22 C 0.098 3.902 23 F -0.140 7.140 24 C -0.146 4.146 25 C -0.087 4.087 26 C 0.474 3.526 27 O -0.481 6.481 28 O -0.525 6.525 29 C -0.084 4.084 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.353 0.647 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.134 0.866 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.407 0.593 43 H 0.065 0.935 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.394 -9.278 -9.461 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.706 3.294 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.543 4.543 8 H 0.092 0.908 9 C -0.010 4.010 10 H 0.048 0.952 11 C -0.165 4.165 12 C -0.187 4.187 13 C -0.027 4.027 14 H 0.090 0.910 15 N -0.299 5.299 16 C -0.009 4.009 17 H 0.101 0.899 18 C -0.115 4.115 19 C -0.101 4.101 20 C -0.102 4.102 21 C -0.171 4.171 22 C 0.079 3.921 23 F -0.119 7.119 24 C -0.165 4.165 25 C -0.105 4.105 26 C 0.313 3.687 27 O -0.365 6.365 28 O -0.338 6.338 29 C -0.122 4.122 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.177 0.823 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.152 0.848 39 H 0.153 0.847 40 H 0.157 0.843 41 H 0.158 0.842 42 H 0.266 0.734 43 H 0.084 0.916 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.815 -9.441 -9.048 24.582 hybrid contribution 0.646 1.650 -0.462 1.831 sum 21.461 -7.791 -9.509 24.733 Atomic orbital electron populations 1.69908 1.06256 1.26759 1.51354 1.24993 0.94601 0.98896 0.94624 0.86928 0.80186 0.83947 0.78333 1.20469 1.22055 1.19015 1.21043 0.88704 0.94367 1.50140 0.90773 1.19987 0.96595 0.92001 0.92452 0.95171 1.22604 0.95272 0.97205 1.01392 1.22882 0.98990 0.98586 0.98224 1.22641 0.98870 0.85805 0.95393 0.90989 1.60266 1.02693 1.37118 1.29799 1.20929 0.91529 0.99620 0.88786 0.89891 1.20711 1.02794 0.98860 0.89173 1.19824 0.94829 0.98877 0.96526 1.20919 0.99850 0.95898 0.93511 1.21146 0.95585 1.02637 0.97699 1.17779 0.94409 0.97265 0.82682 1.91509 1.90883 1.85984 1.43492 1.21221 1.00607 0.98707 0.95919 1.21071 0.95536 0.99132 0.94757 1.23492 0.79650 0.74967 0.90606 1.90753 1.59009 1.43976 1.42763 1.84502 1.25984 1.80408 1.42875 1.22309 0.91720 0.98545 0.99662 0.92804 0.91400 0.94255 0.93402 0.92570 0.82264 0.89082 0.88693 0.84839 0.84719 0.84317 0.84220 0.73401 0.91597 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.88 22.03 24.88 -169.99 -4.23 17.80 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.27 -6.41 6.41 56.52 0.36 -6.04 16 7 C -0.50 -14.24 8.94 -34.44 -0.31 -14.55 16 8 H 0.07 2.27 8.01 -52.48 -0.42 1.85 16 9 C 0.01 0.21 2.28 -90.11 -0.21 0.01 16 10 H 0.03 0.74 7.06 -51.93 -0.37 0.37 16 11 C -0.13 -2.67 4.89 -25.50 -0.12 -2.80 16 12 C -0.15 -2.47 6.43 -25.50 -0.16 -2.63 16 13 C 0.08 1.37 2.77 -66.06 -0.18 1.19 16 14 H 0.07 1.23 7.70 -51.93 -0.40 0.83 16 15 N -0.66 -9.14 5.69 -99.23 -0.56 -9.71 16 16 C 0.10 1.13 2.41 -68.87 -0.17 0.97 16 17 H 0.08 0.88 7.80 -51.92 -0.40 0.47 16 18 C -0.08 -0.63 4.94 -27.89 -0.14 -0.77 16 19 C -0.10 -0.86 4.84 -104.62 -0.51 -1.36 16 20 C -0.08 -0.67 9.70 -39.59 -0.38 -1.06 16 21 C -0.15 -1.36 10.03 -39.51 -0.40 -1.75 16 22 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 23 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 24 C -0.15 -1.43 10.03 -39.51 -0.40 -1.83 16 25 C -0.09 -0.79 8.03 -39.59 -0.32 -1.11 16 26 C 0.47 5.70 7.41 36.01 0.27 5.96 16 27 O -0.48 -7.77 17.02 -18.75 -0.32 -8.09 16 28 O -0.53 -4.44 13.23 -39.26 -0.52 -4.96 16 29 C -0.08 -1.72 5.96 -24.75 -0.15 -1.87 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 31 H 0.07 1.53 7.83 -51.93 -0.41 1.12 16 32 H 0.04 0.83 6.05 -51.93 -0.31 0.52 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.87 7.55 -51.93 -0.39 0.48 16 35 H 0.35 4.48 4.87 -39.29 -0.19 4.29 16 36 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 37 H 0.09 0.61 7.94 -51.93 -0.41 0.20 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.14 1.14 7.52 -52.49 -0.39 0.74 16 42 H 0.41 1.92 9.10 45.56 0.41 2.33 16 43 H 0.07 1.38 8.05 -51.93 -0.42 0.96 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 LS Contribution 360.43 15.07 5.43 5.43 Total: -1.00 -33.77 360.43 -8.36 -42.13 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.41 Total: 5.10 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -3.56 Total: -18.93 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.21 Total: -36.88 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.84 Total: -13.06 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.23 Total: 17.80 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.77 -8.36 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.469 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds