Wall clock time and date at job start Tue Mar 31 2020 12:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99828 * 2 1 4 4 H 1.48495 * 109.47330 * 270.00435 * 3 2 1 5 5 H 1.48508 * 109.47079 * 30.00568 * 3 2 1 6 6 H 1.48501 * 109.46925 * 150.00022 * 3 2 1 7 7 C 1.37871 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00220 * 179.97438 * 7 2 1 10 10 H 1.09004 * 110.53710 * 57.38241 * 9 7 2 11 11 C 1.54270 * 110.48204 * 294.77859 * 9 7 2 12 12 C 1.54093 * 106.61762 * 217.59727 * 11 9 7 13 13 C 1.54261 * 106.49289 * 0.17313 * 12 11 9 14 14 H 1.08999 * 110.49037 * 264.70684 * 13 12 11 15 15 N 1.46906 * 110.48318 * 142.19652 * 13 12 11 16 16 C 1.46895 * 111.00018 * 88.24644 * 15 13 12 17 17 H 1.09009 * 109.46664 * 324.99407 * 16 15 13 18 18 C 1.52998 * 109.46929 * 205.00103 * 16 15 13 19 19 C 1.50695 * 109.47466 * 64.99562 * 18 16 15 20 20 C 1.38242 * 119.97636 * 90.00013 * 19 18 16 21 21 C 1.38205 * 120.02917 * 180.02562 * 20 19 18 22 22 C 1.38462 * 119.97060 * 359.97438 * 21 20 19 23 23 F 1.35093 * 120.02496 * 179.97438 * 22 21 20 24 24 C 1.38458 * 119.95069 * 0.02562 * 22 21 20 25 25 C 1.38202 * 119.97524 * 0.02562 * 24 22 21 26 26 C 1.50699 * 109.47756 * 84.99417 * 16 15 13 27 27 O 1.20820 * 119.99599 * 0.02562 * 26 16 15 28 28 O 1.34229 * 120.00241 * 179.97438 * 26 16 15 29 29 C 1.54888 * 110.48828 * 180.02562 * 9 7 2 30 30 H 0.97004 * 120.00275 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.03281 * 336.99210 * 11 9 7 32 32 H 1.09006 * 110.03493 * 98.37696 * 11 9 7 33 33 H 1.08996 * 110.15752 * 240.88228 * 12 11 9 34 34 H 1.08999 * 110.00258 * 119.38532 * 12 11 9 35 35 H 1.00895 * 111.00304 * 324.28223 * 15 13 12 36 36 H 1.09006 * 109.47154 * 304.99290 * 18 16 15 37 37 H 1.09003 * 109.47073 * 184.99414 * 18 16 15 38 38 H 1.07998 * 119.98964 * 0.02562 * 20 19 18 39 39 H 1.07996 * 120.01353 * 179.70057 * 21 20 19 40 40 H 1.07997 * 120.01365 * 180.02562 * 24 22 21 41 41 H 1.07994 * 119.99127 * 179.97438 * 25 24 22 42 42 H 0.96696 * 116.99678 * 180.02562 * 28 26 16 43 43 H 1.09003 * 110.75598 * 38.31025 * 29 9 7 44 44 H 1.08998 * 110.75562 * 274.93186 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8943 -0.6440 0.8586 11 6 4.0509 -0.5881 -1.3133 12 6 5.3009 -1.4045 -1.6947 13 6 5.4720 -2.4796 -0.6017 14 1 6.1718 -2.1396 0.1616 15 7 5.9312 -3.7441 -1.1919 16 6 7.3978 -3.7902 -1.2623 17 1 7.7831 -2.7918 -1.4696 18 6 7.8248 -4.7437 -2.3800 19 6 7.3789 -4.1914 -3.7093 20 6 8.2129 -3.3509 -4.4229 21 6 7.8048 -2.8434 -5.6419 22 6 6.5603 -3.1774 -6.1486 23 9 6.1601 -2.6815 -7.3398 24 6 5.7259 -4.0193 -5.4330 25 6 6.1357 -4.5248 -4.2138 26 6 7.9489 -4.2784 0.0525 27 8 7.1971 -4.5596 0.9555 28 8 9.2750 -4.4019 0.2201 29 6 4.0536 -2.6450 -0.0023 30 1 -0.4851 0.8401 0.0004 31 1 3.2982 -0.6665 -2.0978 32 1 4.3214 0.4565 -1.1588 33 1 6.1777 -0.7578 -1.7228 34 1 5.1547 -1.8786 -2.6652 35 1 5.5207 -3.8885 -2.1021 36 1 7.3666 -5.7197 -2.2199 37 1 8.9100 -4.8466 -2.3750 38 1 9.1837 -3.0908 -4.0277 39 1 8.4545 -2.1829 -6.1969 40 1 4.7551 -4.2809 -5.8275 41 1 5.4849 -5.1811 -3.6553 42 1 9.5810 -4.7192 1.0807 43 1 3.4394 -3.2863 -0.6344 44 1 4.1071 -3.0382 1.0129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601075918.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:00 Heat of formation + Delta-G solvation = -140.972129 kcal Electronic energy + Delta-G solvation = -27460.335184 eV Core-core repulsion = 23483.386097 eV Total energy + Delta-G solvation = -3976.949087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88668 -41.47205 -40.19851 -39.37118 -37.03380 -36.48020 -34.56788 -32.88880 -32.07267 -30.41058 -29.77275 -27.94333 -25.82427 -25.12550 -23.99179 -22.52996 -21.68562 -21.32362 -20.88930 -18.94661 -18.74691 -18.62375 -17.63942 -17.34723 -17.02943 -16.81247 -16.59215 -16.53628 -16.12659 -15.60936 -15.58029 -15.00224 -14.85247 -14.48591 -14.35600 -14.23276 -14.19460 -13.85608 -13.67650 -13.37989 -12.90110 -12.78449 -12.64685 -12.60284 -12.43023 -12.33651 -12.02290 -11.89227 -11.75552 -11.56287 -11.53653 -11.42236 -11.16497 -10.97159 -10.71048 -10.04776 -9.54662 -9.38826 -8.28007 -6.30714 0.11383 0.29232 1.31376 1.34143 1.34746 1.45126 2.06282 2.34688 2.61129 3.06389 3.12389 3.32974 3.71125 3.80119 3.83061 3.90684 3.94262 4.01331 4.10604 4.20220 4.33474 4.36870 4.46905 4.58093 4.69468 4.72837 4.86422 4.87508 4.92832 5.00342 5.02210 5.05698 5.12445 5.20329 5.20644 5.28626 5.30584 5.50057 5.54533 5.64413 5.74053 5.81655 5.93845 6.01090 6.32960 6.40848 6.76049 7.15566 7.34314 8.89236 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009843 B = 0.004459 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.836096 B = 6277.917629 C = 8305.744726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.011 3.989 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.246 1.246 7 C -0.511 4.511 8 H 0.030 0.970 9 C 0.003 3.997 10 H 0.026 0.974 11 C -0.125 4.125 12 C -0.135 4.135 13 C 0.099 3.901 14 H 0.075 0.925 15 N -0.673 5.673 16 C 0.102 3.898 17 H 0.100 0.900 18 C -0.068 4.068 19 C -0.099 4.099 20 C -0.077 4.077 21 C -0.153 4.153 22 C 0.073 3.927 23 F -0.154 7.154 24 C -0.159 4.159 25 C -0.095 4.095 26 C 0.481 3.519 27 O -0.532 6.532 28 O -0.510 6.510 29 C -0.082 4.082 30 H 0.264 0.736 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.359 0.641 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.164 0.836 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.426 0.574 43 H 0.051 0.949 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.597 -8.618 -10.074 28.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.185 4.185 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.169 1.169 7 C -0.549 4.549 8 H 0.048 0.952 9 C -0.016 4.016 10 H 0.044 0.956 11 C -0.163 4.163 12 C -0.174 4.174 13 C -0.011 4.011 14 H 0.093 0.907 15 N -0.309 5.309 16 C -0.010 4.010 17 H 0.117 0.883 18 C -0.105 4.105 19 C -0.099 4.099 20 C -0.095 4.095 21 C -0.172 4.172 22 C 0.054 3.946 23 F -0.133 7.133 24 C -0.178 4.178 25 C -0.113 4.113 26 C 0.322 3.678 27 O -0.420 6.420 28 O -0.323 6.323 29 C -0.121 4.121 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.184 0.816 36 H 0.109 0.891 37 H 0.140 0.860 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.287 0.713 43 H 0.070 0.930 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 25.074 -8.808 -9.673 28.281 hybrid contribution -0.673 1.303 -0.231 1.484 sum 24.401 -7.505 -9.903 27.383 Atomic orbital electron populations 1.70066 1.08254 1.27874 1.53283 1.25873 0.95359 1.02971 0.94332 0.85890 0.79434 0.78812 0.79210 1.18939 1.22081 1.16933 1.21350 0.91494 0.92737 1.49324 0.95186 1.19948 0.93405 0.94418 0.93819 0.95634 1.22436 0.96841 0.98082 0.98962 1.22791 0.97688 0.98285 0.98626 1.22291 0.96169 0.87166 0.95433 0.90712 1.60059 1.05145 1.35344 1.30339 1.21064 0.89341 1.01219 0.89354 0.88258 1.20691 1.04337 0.97942 0.87543 1.19918 0.94497 0.98814 0.96713 1.21242 1.00752 0.94778 0.92748 1.21402 0.94992 1.02630 0.98182 1.18099 0.95558 0.98261 0.82666 1.91470 1.91156 1.86295 1.44350 1.21332 1.00867 0.99127 0.96466 1.21201 0.96211 0.99311 0.94560 1.23658 0.80221 0.73681 0.90217 1.90756 1.60384 1.46460 1.44387 1.84449 1.23874 1.79729 1.44263 1.22175 0.94510 0.96247 0.99141 0.92693 0.93458 0.93764 0.90430 0.91238 0.81584 0.89055 0.86030 0.81884 0.83147 0.84382 0.83840 0.71282 0.92976 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 2 C 0.01 0.65 5.46 84.65 0.46 1.12 16 3 Si 0.94 45.38 24.88 68.60 1.71 47.08 16 4 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.25 -10.97 6.41 99.48 0.64 -10.33 16 7 C -0.51 -29.98 8.94 25.60 0.23 -29.75 16 8 H 0.03 1.96 8.01 -2.91 -0.02 1.93 16 9 C 0.00 0.16 2.28 -10.46 -0.02 0.14 16 10 H 0.03 1.23 7.06 -2.38 -0.02 1.21 16 11 C -0.12 -5.08 4.89 31.39 0.15 -4.92 16 12 C -0.13 -4.07 6.43 31.39 0.20 -3.87 16 13 C 0.10 3.11 2.77 45.98 0.13 3.23 16 14 H 0.07 2.34 7.70 -2.39 -0.02 2.32 16 15 N -0.67 -17.01 5.69 -467.86 -2.66 -19.67 16 16 C 0.10 1.84 2.41 44.17 0.11 1.95 16 17 H 0.10 1.57 7.80 -2.38 -0.02 1.55 16 18 C -0.07 -0.82 4.94 29.85 0.15 -0.67 16 19 C -0.10 -1.34 4.84 -19.86 -0.10 -1.44 16 20 C -0.08 -0.92 9.70 22.26 0.22 -0.70 16 21 C -0.15 -2.29 10.03 22.32 0.22 -2.07 16 22 C 0.07 1.44 7.30 22.38 0.16 1.61 16 23 F -0.15 -3.55 17.27 44.97 0.78 -2.77 16 24 C -0.16 -2.99 10.03 22.31 0.22 -2.77 16 25 C -0.09 -1.55 8.03 22.26 0.18 -1.37 16 26 C 0.48 10.06 7.41 71.24 0.53 10.58 16 27 O -0.53 -16.34 17.02 21.98 0.37 -15.97 16 28 O -0.51 -6.54 13.23 -51.41 -0.68 -7.22 16 29 C -0.08 -3.40 5.96 31.88 0.19 -3.21 16 30 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 31 H 0.05 2.09 7.83 -2.39 -0.02 2.08 16 32 H 0.04 1.74 6.05 -2.38 -0.01 1.73 16 33 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.94 7.55 -2.39 -0.02 1.92 16 35 H 0.36 8.34 4.87 -89.70 -0.44 7.90 16 36 H 0.09 1.16 8.09 -2.38 -0.02 1.14 16 37 H 0.12 0.90 7.94 -2.39 -0.02 0.88 16 38 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 40 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.14 2.15 7.52 -2.91 -0.02 2.13 16 42 H 0.43 2.45 9.10 -74.06 -0.67 1.78 16 43 H 0.05 2.25 8.05 -2.39 -0.02 2.23 16 44 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -76.58 360.43 2.70 -73.87 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -0.15 Total: 17.64 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.03 Total: -32.14 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.36 Total: -80.50 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.31 Total: -23.18 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.78 Total: -2.77 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.71 Total: 47.08 kcal Total: -76.58 2.70 -73.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075918.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.098 kcal (2) G-P(sol) polarization free energy of solvation -76.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds