Wall clock time and date at job start Tue Mar 31 2020 12:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 115.54898 * 2 1 4 4 C 1.38236 * 120.00408 * 56.31804 * 3 2 1 5 5 C 1.38236 * 120.00246 * 179.97438 * 4 3 2 6 6 C 1.38234 * 119.99816 * 0.27845 * 5 4 3 7 7 C 1.38235 * 120.00143 * 359.51143 * 6 5 4 8 8 C 1.38238 * 119.99833 * 0.46718 * 7 6 5 9 9 C 1.53002 * 117.50074 * 214.32949 * 2 1 3 10 10 C 1.53001 * 117.50080 * 145.67003 * 2 1 3 11 11 H 1.08998 * 117.49484 * 0.02562 * 10 2 1 12 12 C 1.50697 * 117.49994 * 215.00379 * 10 2 1 13 13 O 1.21278 * 119.99891 * 4.09032 * 12 10 2 14 14 N 1.34772 * 120.00237 * 184.09311 * 12 10 2 15 15 C 1.37144 * 119.99733 * 4.60614 * 14 12 10 16 16 H 1.08000 * 120.00194 * 351.03143 * 15 14 12 17 17 C 1.38892 * 119.99874 * 171.04081 * 15 14 12 18 18 N 1.31421 * 120.00089 * 359.44638 * 17 15 14 19 19 Si 1.86802 * 119.99945 * 179.45633 * 17 15 14 20 20 H 1.48496 * 109.47411 * 89.99242 * 19 17 15 21 21 H 1.48504 * 109.47073 * 209.99913 * 19 17 15 22 22 H 1.48503 * 109.46906 * 329.99455 * 19 17 15 23 23 C 1.39796 * 120.00457 * 184.60519 * 14 12 10 24 24 C 1.38962 * 120.07405 * 95.54272 * 23 14 12 25 25 C 1.38090 * 119.91416 * 179.79506 * 24 23 14 26 26 C 1.38298 * 120.07796 * 0.46342 * 25 24 23 27 27 C 1.38312 * 120.16161 * 359.78628 * 26 25 24 28 28 C 1.38078 * 120.07197 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.47216 * 34.41846 * 1 2 3 30 30 H 1.08996 * 109.47254 * 154.42020 * 1 2 3 31 31 H 1.09008 * 109.47041 * 274.41895 * 1 2 3 32 32 H 1.08002 * 119.99398 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.99858 * 180.02562 * 5 4 3 34 34 H 1.07996 * 119.99554 * 179.72500 * 6 5 4 35 35 H 1.07995 * 120.00020 * 180.25174 * 7 6 5 36 36 H 1.08000 * 119.99617 * 179.79420 * 8 7 6 37 37 H 1.08998 * 117.49274 * 359.97438 * 9 2 1 38 38 H 1.08999 * 117.49700 * 144.97432 * 9 2 1 39 39 H 0.97001 * 119.99756 * 185.00937 * 18 17 15 40 40 H 1.07998 * 120.04074 * 359.97438 * 24 23 14 41 41 H 1.08000 * 119.95558 * 180.25114 * 25 24 23 42 42 H 1.08010 * 119.92137 * 179.77266 * 26 25 24 43 43 H 1.07997 * 119.96499 * 180.02562 * 27 26 25 44 44 H 1.08002 * 120.03978 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 6 1.8790 2.2696 0.9962 5 6 2.4756 3.5166 0.9964 6 6 3.3687 3.8557 -0.0027 7 6 3.6729 2.9442 -0.9965 8 6 3.0767 1.6970 -0.9965 9 6 2.2364 -1.1207 -0.7654 10 6 2.2364 -1.1207 0.7654 11 1 1.6112 -1.8583 1.2685 12 6 3.5289 -0.7805 1.4615 13 8 3.9333 0.3629 1.4646 14 7 4.2356 -1.7468 2.0806 15 6 3.8289 -3.0539 1.9973 16 1 2.8703 -3.2945 1.5620 17 6 4.6499 -4.0682 2.4729 18 7 5.8210 -3.7763 2.9929 19 14 4.0895 -5.8474 2.3733 20 1 4.5310 -6.4340 1.0826 21 1 4.6834 -6.6171 3.4959 22 1 2.6082 -5.9055 2.4624 23 6 5.3831 -1.4168 2.8077 24 6 5.3047 -1.2202 4.1811 25 6 6.4411 -0.8985 4.8967 26 6 7.6542 -0.7626 4.2467 27 6 7.7349 -0.9525 2.8790 28 6 6.6036 -1.2791 2.1579 29 1 -0.3634 0.8478 -0.5809 30 1 -0.3633 -0.9269 -0.4437 31 1 -0.3633 0.0792 1.0247 32 1 1.1785 2.0060 1.7747 33 1 2.2409 4.2274 1.7749 34 1 3.8314 4.8315 -0.0049 35 1 4.3738 3.2077 -1.7747 36 1 3.3118 0.9861 -1.7747 37 1 1.6112 -1.8582 -1.2685 38 1 3.1711 -0.8745 -1.2692 39 1 6.4247 -4.4877 3.2583 40 1 4.3568 -1.3217 4.6886 41 1 6.3817 -0.7495 5.9647 42 1 8.5407 -0.5073 4.8083 43 1 8.6840 -0.8459 2.3747 44 1 6.6672 -1.4269 1.0899 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888564251.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:49 Heat of formation + Delta-G solvation = 64.341921 kcal Electronic energy + Delta-G solvation = -27313.305245 eV Core-core repulsion = 23776.028468 eV Total energy + Delta-G solvation = -3537.276777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.98070 -38.77566 -37.36163 -36.00128 -34.60083 -31.59825 -30.50109 -30.16939 -29.75994 -28.95978 -28.09360 -24.95190 -23.83520 -22.70746 -21.92506 -21.42948 -20.93305 -19.35777 -18.85859 -17.61521 -16.69118 -15.95876 -15.42180 -14.70416 -14.61220 -14.60020 -14.32195 -14.25257 -13.68687 -13.67799 -13.13753 -12.94760 -12.89171 -12.71638 -12.37975 -12.29282 -11.99723 -11.86340 -11.65738 -11.42196 -11.23705 -11.21750 -10.88228 -10.63181 -10.55040 -10.48732 -10.28146 -10.20780 -9.83403 -9.54044 -9.42021 -8.67813 -8.33458 -8.02255 -7.77624 -7.72342 -7.62233 -6.08088 -3.97982 1.94788 1.99047 2.61916 2.63716 3.07799 3.16995 3.19472 3.55890 3.99138 4.21829 4.39547 4.55018 4.99425 5.05350 5.07174 5.26783 5.32095 5.41355 5.43919 5.52142 5.58080 5.88813 5.89313 5.91363 5.97169 5.99662 6.00374 6.09824 6.12869 6.19056 6.20841 6.37736 6.48956 6.54730 6.57212 6.59701 6.65927 6.95409 7.00651 7.01758 7.17491 7.19622 7.32993 7.45519 7.57197 7.57424 7.67628 7.88030 8.07101 8.49194 9.02662 9.40802 9.83639 10.65483 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.005459 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.024394 B = 5128.008483 C = 6698.111580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.081 4.081 3 C 0.007 3.993 4 C -0.095 4.095 5 C -0.118 4.118 6 C -0.134 4.134 7 C -0.119 4.119 8 C -0.109 4.109 9 C -0.147 4.147 10 C -0.135 4.135 11 H 0.119 0.881 12 C 0.490 3.510 13 O -0.568 6.568 14 N -0.419 5.419 15 C -0.338 4.338 16 H 0.104 0.896 17 C 0.035 3.965 18 N -0.855 5.855 19 Si 0.924 3.076 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.267 3.733 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.118 4.118 28 C -0.086 4.086 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.270 0.730 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 6.134 -4.236 9.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.082 4.082 3 C 0.007 3.993 4 C -0.113 4.113 5 C -0.136 4.136 6 C -0.152 4.152 7 C -0.137 4.137 8 C -0.127 4.127 9 C -0.184 4.184 10 C -0.156 4.156 11 H 0.136 0.864 12 C 0.279 3.721 13 O -0.452 6.452 14 N -0.136 5.136 15 C -0.465 4.465 16 H 0.121 0.879 17 C -0.170 4.170 18 N -0.492 5.492 19 Si 0.750 3.250 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.195 1.195 23 C 0.176 3.824 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.169 4.169 27 C -0.137 4.137 28 C -0.105 4.105 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.169 6.549 -4.069 9.283 hybrid contribution 0.080 -1.538 0.189 1.552 sum -5.089 5.011 -3.880 8.128 Atomic orbital electron populations 1.21289 0.91393 1.01841 1.01932 1.20255 0.93995 0.88644 1.05297 1.18607 0.94741 0.92088 0.93873 1.20639 1.00069 0.93399 0.97239 1.20899 0.97831 0.96651 0.98248 1.20887 0.99310 0.99184 0.95869 1.20893 0.99705 0.94226 0.98848 1.20784 0.96956 0.96212 0.98752 1.23098 1.02295 0.99812 0.93198 1.22213 0.98034 1.00650 0.94662 0.86358 1.19142 0.85807 0.84879 0.82264 1.90663 1.71126 1.19953 1.63420 1.41343 1.21695 1.06896 1.43685 1.19724 1.04730 0.80315 1.41691 0.87860 1.25272 0.95605 1.00157 0.95985 1.69886 1.07601 1.32635 1.39068 0.85969 0.78802 0.82270 0.77942 1.20374 1.20838 1.19544 1.16874 0.85855 0.90102 0.89588 1.20821 0.97514 1.01273 0.93673 1.20577 0.92971 1.01957 0.98050 1.20632 0.96725 1.05050 0.94522 1.20592 0.97022 1.01953 0.94137 1.20751 0.92129 0.99086 0.98562 0.92092 0.92150 0.92140 0.87276 0.87127 0.87235 0.87145 0.87078 0.88339 0.88526 0.91745 0.88157 0.88027 0.88147 0.88052 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.62 37.15 0.36 -1.00 16 2 C -0.08 -1.31 2.37 -155.66 -0.37 -1.67 16 3 C 0.01 0.12 2.95 -104.62 -0.31 -0.19 16 4 C -0.10 -1.64 8.73 -39.58 -0.35 -1.98 16 5 C -0.12 -1.90 10.05 -39.58 -0.40 -2.29 16 6 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 7 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 8 C -0.11 -1.86 8.83 -39.58 -0.35 -2.21 16 9 C -0.15 -2.35 9.12 -26.69 -0.24 -2.59 16 10 C -0.13 -2.53 4.66 -91.74 -0.43 -2.96 16 11 H 0.12 2.14 7.07 -51.93 -0.37 1.77 16 12 C 0.49 11.38 7.35 -10.99 -0.08 11.30 16 13 O -0.57 -14.17 13.18 5.56 0.07 -14.10 16 14 N -0.42 -10.40 2.66 -58.98 -0.16 -10.56 16 15 C -0.34 -8.31 9.36 -14.93 -0.14 -8.45 16 16 H 0.10 2.36 6.04 -52.49 -0.32 2.05 16 17 C 0.04 0.87 5.44 -17.49 -0.10 0.78 16 18 N -0.85 -22.05 9.47 55.49 0.53 -21.52 16 19 Si 0.92 19.29 29.56 -169.99 -5.02 14.26 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C 0.27 6.68 2.20 -83.69 -0.18 6.50 16 24 C -0.11 -2.70 9.36 -39.37 -0.37 -3.07 16 25 C -0.12 -2.47 10.04 -39.61 -0.40 -2.87 16 26 C -0.15 -3.06 10.04 -39.53 -0.40 -3.46 16 27 C -0.12 -2.53 10.04 -39.61 -0.40 -2.93 16 28 C -0.09 -2.07 8.88 -39.37 -0.35 -2.42 16 29 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 31 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.77 6.52 -52.49 -0.34 1.43 16 37 H 0.10 1.32 8.05 -51.93 -0.42 0.90 16 38 H 0.10 1.64 6.65 -51.93 -0.35 1.29 16 39 H 0.27 6.80 8.32 -40.82 -0.34 6.46 16 40 H 0.10 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 43 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 44 H 0.10 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -29.11 364.62 -10.36 -39.47 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.98 Total: 11.26 kcal Atomic # 6 Polarization: -19.02 SS G_CDS: -5.29 Total: -24.31 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.37 Total: -32.08 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.07 Total: -14.10 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.11 -10.36 -39.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888564251.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.812 kcal (2) G-P(sol) polarization free energy of solvation -29.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds