Wall clock time and date at job start Tue Mar 31 2020 12:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46829 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46770 * 299.99534 * 3 2 1 6 6 H 1.48494 * 109.47233 * 59.99758 * 3 2 1 7 7 C 1.38810 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00006 * 179.97438 * 9 7 2 11 11 H 1.09003 * 112.85260 * 336.19204 * 10 9 7 12 12 C 1.54051 * 113.69983 * 107.46605 * 10 9 7 13 13 C 1.53780 * 86.98814 * 139.98698 * 12 10 9 14 14 H 1.08998 * 113.61346 * 219.98124 * 13 12 10 15 15 N 1.46501 * 113.61013 * 89.16390 * 13 12 10 16 16 C 1.34774 * 120.00117 * 105.86850 * 15 13 12 17 17 O 1.21616 * 119.99890 * 359.97438 * 16 15 13 18 18 C 1.47415 * 120.00277 * 180.02562 * 16 15 13 19 19 N 1.36072 * 126.44764 * 0.10862 * 18 16 15 20 20 C 1.29936 * 108.47620 * 180.29496 * 19 18 16 21 21 O 1.34051 * 109.24443 * 359.75457 * 20 19 18 22 22 C 1.34260 * 108.22553 * 0.02562 * 21 20 19 23 23 C 1.50704 * 126.52165 * 179.97438 * 22 21 20 24 24 H 1.09002 * 110.54939 * 166.45098 * 23 22 21 25 25 C 1.55227 * 110.77845 * 289.31127 * 23 22 21 26 26 C 1.54813 * 101.98357 * 155.50344 * 25 23 22 27 27 C 1.54098 * 104.30472 * 339.26359 * 26 25 23 28 28 O 1.43744 * 107.29564 * 357.90152 * 27 26 25 29 29 C 1.53777 * 87.17183 * 334.57223 * 13 12 10 30 30 H 0.97000 * 120.00160 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00166 * 359.97438 * 9 7 2 32 32 H 1.09003 * 113.60728 * 25.48227 * 12 10 9 33 33 H 1.09002 * 113.69798 * 254.50783 * 12 10 9 34 34 H 0.97001 * 119.99797 * 285.85904 * 15 13 12 35 35 H 1.07996 * 125.37877 * 179.74074 * 20 19 18 36 36 H 1.08999 * 110.89081 * 37.37076 * 25 23 22 37 37 H 1.09003 * 111.02102 * 273.69589 * 25 23 22 38 38 H 1.09002 * 110.48794 * 220.51904 * 26 25 23 39 39 H 1.09002 * 110.48657 * 98.00326 * 26 25 23 40 40 H 1.08999 * 109.88182 * 117.33024 * 27 26 25 41 41 H 1.09008 * 109.87958 * 238.32904 * 27 26 25 42 42 H 1.09007 * 113.61407 * 140.02339 * 29 13 12 43 43 H 1.09001 * 113.61540 * 270.92478 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 3.0655 -3.5639 -0.4049 12 6 2.0009 -4.4047 1.3461 13 6 1.8495 -5.6982 0.5282 14 1 1.1362 -6.4034 0.9546 15 7 3.1271 -6.3233 0.1772 16 6 3.5277 -7.4415 0.8141 17 8 2.8288 -7.9313 1.6805 18 6 4.8135 -8.0702 0.4613 19 7 5.6952 -7.6348 -0.4792 20 6 6.7057 -8.4513 -0.5057 21 8 6.5160 -9.4186 0.4027 22 6 5.3430 -9.1945 1.0162 23 6 4.7272 -10.0317 2.1075 24 1 3.9038 -9.4972 2.5813 25 6 4.2401 -11.3950 1.5472 26 6 4.2628 -12.2886 2.8111 27 6 5.2208 -11.5614 3.7744 28 8 5.7219 -10.4035 3.0856 29 6 1.2600 -4.8288 -0.5949 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 1.1227 -4.1610 1.9441 33 1 2.9291 -4.3540 1.9152 34 1 3.6847 -5.9325 -0.5137 35 1 7.5628 -8.3644 -1.1569 36 1 4.9284 -11.7728 0.7912 37 1 3.2298 -11.3143 1.1459 38 1 4.6445 -13.2807 2.5701 39 1 3.2658 -12.3597 3.2461 40 1 4.6826 -11.2550 4.6714 41 1 6.0459 -12.2206 4.0445 42 1 1.5905 -5.1203 -1.5919 43 1 0.1796 -4.7008 -0.5266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020468331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:04 Heat of formation + Delta-G solvation = -20.371398 kcal Electronic energy + Delta-G solvation = -26595.369772 eV Core-core repulsion = 22643.570287 eV Total energy + Delta-G solvation = -3951.799485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.75151 -39.93470 -39.65478 -37.94810 -35.12333 -34.03377 -32.68735 -32.51606 -31.94562 -29.90285 -28.49905 -25.23658 -25.10861 -24.04556 -23.88575 -22.28678 -21.95011 -21.51259 -20.78792 -18.93428 -18.46440 -17.20016 -17.08528 -16.99638 -16.74964 -16.19493 -15.75603 -15.52435 -15.05228 -14.69018 -14.37359 -14.25482 -14.03546 -13.80029 -13.66469 -13.35832 -12.65343 -12.32758 -12.18328 -12.15866 -11.87386 -11.84343 -11.66681 -11.58652 -11.24076 -11.08107 -10.90719 -10.78230 -10.36719 -10.32177 -10.17234 -9.99252 -9.88612 -9.56377 -9.30753 -8.90782 -8.78325 -6.97047 -5.78969 -3.07782 0.74005 1.79462 2.20187 3.05413 3.13920 3.41488 3.42824 3.48796 3.50858 3.77028 4.07992 4.11103 4.46932 4.58847 4.61441 4.63543 4.82191 4.84526 5.02583 5.15990 5.20105 5.21505 5.28945 5.39000 5.45379 5.45512 5.50383 5.53539 5.64971 5.76093 5.87744 5.94448 6.12533 6.27047 6.32939 6.38225 6.49992 6.63896 6.69297 7.05018 7.13502 7.58030 7.69937 8.14269 8.39533 9.50941 10.08073 10.42694 11.43435 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023224 B = 0.002390 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.370658 B =11713.269113 C =12165.350590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.712 5.712 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.176 4.176 13 C 0.114 3.886 14 H 0.098 0.902 15 N -0.684 5.684 16 C 0.602 3.398 17 O -0.539 6.539 18 C -0.055 4.055 19 N -0.461 5.461 20 C 0.181 3.819 21 O -0.188 6.188 22 C 0.044 3.956 23 C 0.149 3.851 24 H 0.137 0.863 25 C -0.145 4.145 26 C -0.154 4.154 27 C 0.046 3.954 28 O -0.369 6.369 29 C -0.158 4.158 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.410 0.590 35 H 0.258 0.742 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.368 -26.928 1.394 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.218 4.218 13 C 0.009 3.991 14 H 0.116 0.884 15 N -0.333 5.333 16 C 0.387 3.613 17 O -0.417 6.417 18 C -0.176 4.176 19 N -0.190 5.190 20 C -0.047 4.047 21 O -0.073 6.073 22 C -0.013 4.013 23 C 0.092 3.908 24 H 0.154 0.846 25 C -0.183 4.183 26 C -0.192 4.192 27 C -0.030 4.030 28 O -0.289 6.289 29 C -0.198 4.198 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.246 0.754 35 H 0.273 0.727 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.115 -26.438 1.646 28.726 hybrid contribution 0.578 0.540 -0.094 0.797 sum 11.694 -25.897 1.552 28.457 Atomic orbital electron populations 1.69668 1.05127 1.25644 1.57564 1.24769 0.95538 0.97805 1.02819 0.86115 0.78827 0.84059 0.77185 1.20521 1.21838 1.21840 1.19349 0.91117 0.84199 1.42770 0.91040 1.42402 1.05766 0.99858 1.86905 1.21680 0.95157 0.85162 0.92596 0.90735 1.24360 1.02096 0.95043 1.00305 1.21907 0.84437 0.94251 0.98516 0.88402 1.45505 1.22184 1.25926 1.39667 1.16654 0.82773 0.80482 0.81357 1.90738 1.54572 1.64273 1.32139 1.21542 0.99008 0.96767 1.00250 1.70817 1.02184 1.27399 1.18632 1.28120 1.00061 0.83583 0.92958 1.84408 1.34558 1.46708 1.41638 1.23275 0.84763 0.96738 0.96536 1.22125 0.89974 0.94141 0.84586 0.84609 1.23214 1.03319 0.93266 0.98494 1.22949 1.01027 0.99889 0.95319 1.23208 0.97836 0.86830 0.95158 1.88945 1.42227 1.46413 1.51289 1.23855 1.01613 0.97134 0.97196 0.93499 0.78013 0.89405 0.92325 0.75405 0.72682 0.90190 0.88929 0.89999 0.89896 0.91611 0.89402 0.91610 0.88834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.09 13.06 55.49 0.72 -27.36 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.71 -17.72 5.41 -52.50 -0.28 -18.00 16 10 C 0.17 3.26 4.37 -66.98 -0.29 2.96 16 11 H 0.07 1.45 8.10 -51.93 -0.42 1.03 16 12 C -0.18 -3.16 7.70 -25.78 -0.20 -3.36 16 13 C 0.11 1.76 4.30 -67.12 -0.29 1.47 16 14 H 0.10 1.51 7.50 -51.93 -0.39 1.12 16 15 N -0.68 -9.84 5.26 -54.09 -0.28 -10.13 16 16 C 0.60 8.97 7.81 -12.52 -0.10 8.87 16 17 O -0.54 -8.86 14.18 5.26 0.07 -8.78 16 18 C -0.06 -0.73 6.99 -83.02 -0.58 -1.31 16 19 N -0.46 -5.48 11.06 -11.48 -0.13 -5.60 16 20 C 0.18 1.55 13.19 51.96 0.69 2.23 16 21 O -0.19 -1.97 10.73 6.50 0.07 -1.90 16 22 C 0.04 0.53 6.43 -35.08 -0.23 0.31 16 23 C 0.15 1.65 3.59 -26.70 -0.10 1.55 16 24 H 0.14 1.68 5.84 -51.93 -0.30 1.38 16 25 C -0.15 -1.18 6.60 -24.60 -0.16 -1.34 16 26 C -0.15 -0.95 7.00 -25.20 -0.18 -1.13 16 27 C 0.05 0.35 7.70 37.73 0.29 0.64 16 28 O -0.37 -4.22 11.21 -35.23 -0.39 -4.62 16 29 C -0.16 -2.54 7.57 -25.92 -0.20 -2.73 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.39 10.14 7.92 -40.82 -0.32 9.81 16 32 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.41 5.55 8.43 -40.82 -0.34 5.20 16 35 H 0.26 0.76 8.06 -52.49 -0.42 0.33 16 36 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.51 8.12 -51.93 -0.42 1.08 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -33.79 363.81 -7.32 -41.10 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.97 Total: 11.61 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.58 Total: 0.80 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.03 Total: -61.10 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.25 Total: -15.30 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.79 -7.32 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020468331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.733 kcal (2) G-P(sol) polarization free energy of solvation -33.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds