Wall clock time and date at job start Tue Mar 31 2020 13:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47763 * 2 1 4 4 C 1.50696 * 109.47141 * 239.99547 * 2 1 3 5 5 H 1.08008 * 119.99993 * 240.00256 * 4 2 1 6 6 C 1.37878 * 120.00118 * 60.00245 * 4 2 1 7 7 N 1.31517 * 119.99503 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00360 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46788 * 90.00005 * 8 6 4 10 10 H 1.48493 * 109.47196 * 209.99874 * 8 6 4 11 11 H 1.48497 * 109.46797 * 330.00383 * 8 6 4 12 12 N 1.46510 * 109.47277 * 119.99883 * 2 1 3 13 13 C 1.46495 * 119.99865 * 59.99529 * 12 2 1 14 14 C 1.34777 * 120.00039 * 239.99847 * 12 2 1 15 15 O 1.21278 * 119.99947 * 0.02562 * 14 12 2 16 16 C 1.50698 * 119.99918 * 179.97438 * 14 12 2 17 17 C 1.53004 * 109.47074 * 180.02562 * 16 14 12 18 18 H 1.09003 * 109.46617 * 55.00321 * 17 16 14 19 19 C 1.53000 * 109.47069 * 295.00638 * 17 16 14 20 20 C 1.50700 * 109.47066 * 175.00156 * 17 16 14 21 21 O 1.21253 * 119.99784 * 30.00009 * 20 17 16 22 22 C 1.47174 * 119.99778 * 210.27610 * 20 17 16 23 23 C 1.39872 * 120.15809 * 179.72383 * 22 20 17 24 24 C 1.37873 * 119.87629 * 179.97438 * 23 22 20 25 25 C 1.38392 * 120.20142 * 0.02562 * 24 23 22 26 26 C 1.38590 * 120.32324 * 359.97438 * 25 24 23 27 27 F 1.35096 * 119.94148 * 180.02562 * 26 25 24 28 28 C 1.38148 * 120.12027 * 359.72621 * 26 25 24 29 29 H 1.09003 * 109.47664 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47251 * 300.00325 * 1 2 3 31 31 H 1.09005 * 109.47402 * 59.99902 * 1 2 3 32 32 H 0.96999 * 119.99710 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47554 * 270.00438 * 13 12 2 34 34 H 1.09001 * 109.47286 * 30.00076 * 13 12 2 35 35 H 1.08997 * 109.46947 * 150.00257 * 13 12 2 36 36 H 1.08999 * 109.46714 * 60.00628 * 16 14 12 37 37 H 1.08994 * 109.47316 * 300.00349 * 16 14 12 38 38 H 1.08996 * 109.47205 * 59.99942 * 19 17 16 39 39 H 1.09003 * 109.46606 * 180.02562 * 19 17 16 40 40 H 1.08998 * 109.46704 * 299.99528 * 19 17 16 41 41 H 1.07997 * 120.06068 * 359.97438 * 23 22 20 42 42 H 1.07997 * 119.89815 * 180.02562 * 24 23 22 43 43 H 1.08001 * 119.83684 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.09997 * 180.27127 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9427 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3447 -2.1618 -4.4122 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7568 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1256 1.8916 16 6 3.2951 -0.7458 3.3141 17 6 4.1447 0.2160 4.1472 18 1 3.5664 1.1131 4.3685 19 6 5.3999 0.5995 3.3608 20 6 4.5446 -0.4546 5.4361 21 8 4.6896 -1.6578 5.4739 22 6 4.7534 0.3503 6.6504 23 6 5.1190 -0.2692 7.8500 24 6 5.3135 0.4905 8.9839 25 6 5.1476 1.8637 8.9388 26 6 4.7855 2.4862 7.7547 27 9 4.6262 3.8273 7.7193 28 6 4.5932 1.7386 6.6091 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.7087 1.1611 -3.4844 33 1 0.7375 -2.1443 1.9994 34 1 1.5293 -2.5969 0.4710 35 1 2.4628 -2.5818 1.9865 36 1 3.9005 -1.6024 3.0177 37 1 2.4472 -1.0880 3.9073 38 1 5.1106 1.0846 2.4286 39 1 6.0054 1.2844 3.9546 40 1 5.9782 -0.2975 3.1396 41 1 5.2486 -1.3407 7.8878 42 1 5.5962 0.0125 9.9102 43 1 5.3011 2.4531 9.8307 44 1 4.3152 2.2245 5.6854 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073382519.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:56 Heat of formation + Delta-G solvation = -96.779403 kcal Electronic energy + Delta-G solvation = -26716.997696 eV Core-core repulsion = 22741.964950 eV Total energy + Delta-G solvation = -3975.032747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.20905 -40.54844 -39.16008 -38.27482 -35.56819 -34.09772 -32.86257 -31.78127 -30.83595 -29.71351 -27.41679 -26.00565 -25.54462 -25.20979 -23.49942 -22.50730 -21.00527 -19.55597 -18.36606 -17.89498 -16.93101 -16.59898 -16.48332 -16.14537 -15.94551 -15.75988 -15.18814 -15.09644 -14.79586 -14.48685 -14.37285 -14.06472 -13.45053 -13.42929 -12.89591 -12.65648 -12.49018 -12.44458 -12.32272 -12.23456 -11.88219 -11.74264 -11.60401 -11.47371 -11.09342 -11.02282 -10.90634 -10.78190 -10.67461 -10.25709 -10.17032 -9.78079 -9.54646 -9.18510 -9.16390 -8.87046 -8.42825 -7.58215 -6.07757 -4.15693 0.18603 0.76590 2.06680 3.25944 3.26808 3.32657 3.34630 3.39464 3.53095 3.84570 4.09561 4.28207 4.40249 4.50017 4.68579 4.72037 4.84934 5.01120 5.05971 5.23091 5.28019 5.36935 5.47922 5.55430 5.61687 5.71349 5.75038 5.77444 5.84210 5.92268 5.99347 6.06017 6.14852 6.39061 6.39334 6.50548 6.75458 6.83669 7.06853 7.27921 7.42455 7.53775 7.71809 8.01467 8.20008 8.53558 8.82789 9.05301 9.50896 10.97506 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023293 B = 0.002616 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.801827 B =10699.415826 C =11123.534771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.592 5.592 13 C 0.082 3.918 14 C 0.505 3.495 15 O -0.552 6.552 16 C -0.129 4.129 17 C -0.117 4.117 18 H 0.104 0.896 19 C -0.146 4.146 20 C 0.404 3.596 21 O -0.444 6.444 22 C -0.136 4.136 23 C -0.075 4.075 24 C -0.105 4.105 25 C -0.127 4.127 26 C 0.088 3.912 27 F -0.135 7.135 28 C -0.106 4.106 29 H 0.029 0.971 30 H 0.010 0.990 31 H 0.093 0.907 32 H 0.263 0.737 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 -1.624 21.954 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.564 4.564 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.323 5.323 13 C -0.062 4.062 14 C 0.292 3.708 15 O -0.432 6.432 16 C -0.169 4.169 17 C -0.136 4.136 18 H 0.122 0.878 19 C -0.203 4.203 20 C 0.281 3.719 21 O -0.319 6.319 22 C -0.137 4.137 23 C -0.093 4.093 24 C -0.122 4.122 25 C -0.145 4.145 26 C 0.069 3.931 27 F -0.114 7.114 28 C -0.125 4.125 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.116 0.884 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.005 -1.494 21.686 22.838 hybrid contribution 0.144 -0.251 -0.790 0.842 sum 7.149 -1.745 20.895 22.153 Atomic orbital electron populations 1.22084 0.98257 0.99378 1.00751 1.18937 0.90835 0.94542 0.79957 0.91838 1.21325 1.31798 1.12993 0.90324 0.92256 1.24893 0.94957 0.94968 0.98962 1.69881 1.36374 1.22590 1.23746 0.86500 0.79204 0.79304 0.82424 1.20627 1.21103 1.19925 1.48243 1.48824 1.11658 1.23530 1.21624 0.98897 0.83316 1.02398 1.20244 0.79185 0.87116 0.84241 1.90601 1.58429 1.17086 1.77096 1.21592 1.00374 0.99217 0.95717 1.21366 0.99395 1.00039 0.92797 0.87780 1.21864 0.94581 1.01756 1.02065 1.22598 0.72239 0.88336 0.88729 1.90508 1.38383 1.16414 1.86548 1.20437 1.03767 0.93558 0.95940 1.21527 0.95271 1.01199 0.91287 1.21016 0.99571 0.92732 0.98930 1.21432 0.99991 0.95868 0.97251 1.17591 1.03001 0.77628 0.94890 1.91541 1.93212 1.29479 1.97136 1.21640 0.98881 0.93439 0.98525 0.95200 0.97074 0.88861 0.92693 0.93893 0.90086 0.92627 0.88419 0.89436 0.88387 0.92616 0.92617 0.84137 0.84312 0.84281 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.15 0.33 -3.16 16 2 C 0.26 6.51 2.64 -69.08 -0.18 6.32 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -14.09 7.99 -34.44 -0.28 -14.37 16 5 H 0.06 1.57 7.33 -52.48 -0.38 1.18 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.59 -12.43 2.75 -175.27 -0.48 -12.91 16 13 C 0.08 1.37 9.24 59.84 0.55 1.93 16 14 C 0.51 9.98 7.39 -10.99 -0.08 9.90 16 15 O -0.55 -12.56 13.29 5.56 0.07 -12.49 16 16 C -0.13 -1.91 3.24 -27.88 -0.09 -2.00 16 17 C -0.12 -1.55 1.81 -91.77 -0.17 -1.71 16 18 H 0.10 1.35 6.29 -51.93 -0.33 1.02 16 19 C -0.15 -1.97 8.92 37.16 0.33 -1.64 16 20 C 0.40 4.93 6.18 -30.68 -0.19 4.74 16 21 O -0.44 -6.25 16.27 5.58 0.09 -6.16 16 22 C -0.14 -1.41 5.87 -105.07 -0.62 -2.03 16 23 C -0.07 -0.65 9.60 -39.10 -0.38 -1.03 16 24 C -0.10 -0.71 10.03 -39.66 -0.40 -1.11 16 25 C -0.13 -0.93 10.02 -39.39 -0.39 -1.33 16 26 C 0.09 0.83 7.29 -39.48 -0.29 0.55 16 27 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 28 C -0.11 -1.05 9.34 -39.03 -0.36 -1.42 16 29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 35 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 36 H 0.10 1.41 7.28 -51.93 -0.38 1.03 16 37 H 0.09 1.17 8.11 -51.93 -0.42 0.74 16 38 H 0.10 1.62 5.95 -51.93 -0.31 1.31 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.14 1.14 7.65 -52.49 -0.40 0.74 16 42 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.15 1.45 6.37 -52.48 -0.33 1.12 16 LS Contribution 365.61 15.07 5.51 5.51 Total: -1.00 -31.13 365.61 -7.46 -38.59 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.00 Total: 1.98 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -2.30 Total: -4.70 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.14 Total: -37.30 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: 0.16 Total: -18.65 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.13 -7.46 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073382519.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.189 kcal (2) G-P(sol) polarization free energy of solvation -31.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds