Wall clock time and date at job start Tue Mar 31 2020 12:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.83428 * 2 1 4 4 C 1.53850 * 109.83234 * 121.06102 * 2 1 3 5 5 C 1.52844 * 108.71716 * 182.95644 * 4 2 1 6 6 C 1.50596 * 110.48917 * 308.44244 * 5 4 2 7 7 C 1.38505 * 118.92895 * 200.52992 * 6 5 4 8 8 C 1.38130 * 120.30158 * 180.34772 * 7 6 5 9 9 C 1.38307 * 120.15478 * 0.02562 * 8 7 6 10 10 C 1.38020 * 119.90984 * 359.88736 * 9 8 7 11 11 C 1.38594 * 121.49917 * 20.74156 * 6 5 4 12 12 N 1.40090 * 120.82430 * 359.51986 * 11 6 5 13 13 C 1.34778 * 120.54688 * 193.42773 * 12 11 6 14 14 O 1.21557 * 120.00007 * 150.10926 * 13 12 11 15 15 C 1.47854 * 119.99896 * 330.11009 * 13 12 11 16 16 C 1.39930 * 120.02873 * 314.78785 * 15 13 12 17 17 C 1.38320 * 120.35959 * 179.97438 * 16 15 13 18 18 C 1.37759 * 120.41155 * 0.25744 * 17 16 15 19 19 C 1.40755 * 120.04090 * 359.49007 * 18 17 16 20 20 C 1.41435 * 120.17548 * 180.23621 * 19 18 17 21 21 H 1.07999 * 120.00359 * 35.04941 * 20 19 18 22 22 C 1.39937 * 119.99868 * 215.06068 * 20 19 18 23 23 N 1.30833 * 119.99968 * 5.14693 * 22 20 19 24 24 Si 1.86797 * 120.00213 * 185.15061 * 22 20 19 25 25 H 1.48494 * 109.47222 * 89.99411 * 24 22 20 26 26 H 1.48499 * 109.47076 * 209.99943 * 24 22 20 27 27 H 1.48500 * 109.46699 * 329.99252 * 24 22 20 28 28 C 1.39011 * 120.02412 * 134.75662 * 15 13 12 29 29 H 1.08998 * 109.47166 * 185.48032 * 1 2 3 30 30 H 1.09001 * 109.47236 * 305.48079 * 1 2 3 31 31 H 1.08999 * 109.47446 * 65.47959 * 1 2 3 32 32 H 1.09001 * 109.74309 * 63.12550 * 4 2 1 33 33 H 1.09006 * 109.53179 * 302.66432 * 4 2 1 34 34 H 1.09001 * 109.30191 * 188.12937 * 5 4 2 35 35 H 1.08997 * 109.30489 * 68.75620 * 5 4 2 36 36 H 1.07996 * 119.84975 * 0.36214 * 7 6 5 37 37 H 1.08001 * 119.91948 * 180.02562 * 8 7 6 38 38 H 1.07998 * 120.04344 * 179.90856 * 9 8 7 39 39 H 1.08003 * 119.98196 * 180.02562 * 10 9 8 40 40 H 1.08006 * 119.82111 * 359.95788 * 16 15 13 41 41 H 1.08001 * 119.79739 * 179.97438 * 17 16 15 42 42 H 1.08002 * 119.97787 * 179.72205 * 18 17 16 43 43 H 0.96996 * 120.00099 * 180.02562 * 23 22 20 44 44 H 1.07993 * 120.20068 * 0.02562 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8998 1.0253 0.0000 4 6 2.0520 -0.7467 1.2397 5 6 3.5783 -0.6677 1.2533 6 6 4.1409 -1.1109 -0.0714 7 6 5.4624 -1.5208 -0.1347 8 6 6.0096 -1.9262 -1.3365 9 6 5.2402 -1.9248 -2.4858 10 6 3.9220 -1.5196 -2.4310 11 6 3.3684 -1.1126 -1.2221 12 7 2.0275 -0.7085 -1.1871 13 6 1.2087 -0.9606 -2.2275 14 8 0.0196 -1.1273 -2.0386 15 6 1.7570 -1.0345 -3.5987 16 6 2.6641 -0.0662 -4.0432 17 6 3.1817 -0.1290 -5.3244 18 6 2.8064 -1.1420 -6.1793 19 6 1.8991 -2.1280 -5.7481 20 6 1.5157 -3.1721 -6.6217 21 1 2.2288 -3.5779 -7.3240 22 6 0.2122 -3.6791 -6.5764 23 7 -0.6798 -3.1217 -5.7983 24 14 -0.2542 -5.1519 -7.6265 25 1 -0.0070 -6.4018 -6.8639 26 1 -1.6925 -5.0676 -7.9863 27 1 0.5662 -5.1567 -8.8644 28 6 1.3722 -2.0663 -4.4470 29 1 -0.3633 -1.0229 0.0981 30 1 -0.3634 0.5965 0.8368 31 1 -0.3634 0.4265 -0.9350 32 1 1.7406 -1.7905 1.1991 33 1 1.6540 -0.2798 2.1408 34 1 3.9654 -1.3120 2.0428 35 1 3.8842 0.3600 1.4489 36 1 6.0677 -1.5237 0.7597 37 1 7.0406 -2.2451 -1.3787 38 1 5.6702 -2.2408 -3.4247 39 1 3.3200 -1.5184 -3.3277 40 1 2.9616 0.7347 -3.3825 41 1 3.8809 0.6234 -5.6582 42 1 3.2114 -1.1817 -7.1797 43 1 -1.5832 -3.4734 -5.7666 44 1 0.6724 -2.8158 -4.1081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078037317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:59 Heat of formation + Delta-G solvation = 31.540322 kcal Electronic energy + Delta-G solvation = -27462.264979 eV Core-core repulsion = 23923.565818 eV Total energy + Delta-G solvation = -3538.699161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.52783 -39.88581 -39.47720 -37.27442 -35.88394 -34.85821 -32.90810 -31.99790 -31.36805 -30.54831 -28.82629 -27.35710 -25.77931 -24.57856 -23.27777 -23.16173 -22.73246 -21.46947 -20.23570 -19.34455 -18.20868 -17.49368 -17.32761 -17.03638 -16.60915 -16.34416 -15.94868 -15.71310 -15.20304 -15.00520 -14.89411 -14.77795 -14.39461 -14.34149 -13.98008 -13.81023 -13.62469 -13.41498 -13.16701 -12.98463 -12.90405 -12.87911 -12.65074 -12.24176 -12.16006 -12.11045 -12.03599 -11.59557 -11.53964 -11.43558 -11.06021 -10.99244 -10.46773 -9.61626 -9.39933 -9.10600 -8.68496 -8.57943 -6.44235 0.15557 0.51277 0.70049 0.95676 1.36509 1.43762 1.50617 1.63836 1.83704 2.19757 2.71143 2.96900 3.48529 3.53756 3.75940 3.80240 3.91398 4.11961 4.20551 4.24123 4.35681 4.42499 4.46391 4.48728 4.62973 4.68552 4.75642 4.80880 4.87636 4.92301 5.00127 5.01652 5.04652 5.08381 5.20912 5.24501 5.27805 5.30358 5.39308 5.44718 5.61964 5.71712 5.81032 5.85015 5.90568 5.99401 6.09042 6.20775 6.42012 6.53220 6.86750 6.88299 6.93241 8.36730 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.004592 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.600483 B = 6096.431296 C = 6969.782402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.129 3.871 3 H 0.095 0.905 4 C -0.124 4.124 5 C -0.071 4.071 6 C -0.130 4.130 7 C -0.097 4.097 8 C -0.146 4.146 9 C -0.107 4.107 10 C -0.222 4.222 11 C 0.145 3.855 12 N -0.565 5.565 13 C 0.569 3.431 14 O -0.534 6.534 15 C -0.132 4.132 16 C -0.174 4.174 17 C -0.097 4.097 18 C -0.203 4.203 19 C 0.076 3.924 20 C -0.499 4.499 21 H 0.085 0.915 22 C 0.026 3.974 23 N -0.843 5.843 24 Si 0.985 3.015 25 H -0.265 1.265 26 H -0.273 1.273 27 H -0.251 1.251 28 C -0.117 4.117 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.123 0.877 39 H 0.170 0.830 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.115 0.885 43 H 0.283 0.717 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.626 4.848 13.185 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.029 3.971 3 H 0.113 0.887 4 C -0.162 4.162 5 C -0.107 4.107 6 C -0.133 4.133 7 C -0.115 4.115 8 C -0.164 4.164 9 C -0.126 4.126 10 C -0.241 4.241 11 C 0.051 3.949 12 N -0.289 5.289 13 C 0.361 3.639 14 O -0.411 6.411 15 C -0.136 4.136 16 C -0.193 4.193 17 C -0.115 4.115 18 C -0.223 4.223 19 C 0.074 3.926 20 C -0.529 4.529 21 H 0.104 0.896 22 C -0.186 4.186 23 N -0.470 5.470 24 Si 0.806 3.194 25 H -0.190 1.190 26 H -0.198 1.198 27 H -0.174 1.174 28 C -0.137 4.137 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.186 0.814 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.133 0.867 43 H 0.094 0.906 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.617 4.783 13.372 17.151 hybrid contribution -0.874 -0.764 -0.949 1.499 sum 8.743 4.019 12.423 15.714 Atomic orbital electron populations 1.22106 0.93231 1.02314 1.01973 1.21904 0.95363 0.95963 0.83913 0.88738 1.22020 0.96423 1.00363 0.97353 1.20465 0.93953 1.03308 0.93003 1.19816 0.94877 1.04678 0.93934 1.21201 0.93389 0.98002 0.98924 1.21365 1.00886 1.01810 0.92378 1.21164 0.93320 0.98635 0.99448 1.23391 0.98630 1.02149 0.99894 1.17866 0.82912 0.99244 0.94842 1.45613 1.08926 1.56756 1.17603 1.18882 0.85361 0.74202 0.85499 1.90724 1.17992 1.46246 1.86180 1.19564 1.00932 0.99793 0.93293 1.20472 1.00994 1.00101 0.97745 1.20826 0.99560 0.98275 0.92879 1.21474 1.04902 0.96221 0.99660 1.17876 0.91075 0.92665 0.90964 1.19823 0.97317 1.17203 1.18551 0.89644 1.26814 0.95968 0.99596 0.96245 1.69877 1.04677 1.38304 1.34172 0.85145 0.78052 0.77245 0.78948 1.19012 1.19807 1.17392 1.21284 1.00815 0.98281 0.93370 0.93606 0.89125 0.93899 0.93043 0.86645 0.88024 0.88533 0.82541 0.83624 0.85915 0.81401 0.86856 0.84498 0.86718 0.90621 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 7.74 71.98 0.56 -3.68 16 2 C 0.13 3.64 3.45 45.20 0.16 3.80 16 3 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.12 -2.61 5.44 30.83 0.17 -2.45 16 5 C -0.07 -1.29 5.77 29.76 0.17 -1.12 16 6 C -0.13 -3.41 5.76 -19.75 -0.11 -3.53 16 7 C -0.10 -2.15 9.66 22.31 0.22 -1.94 16 8 C -0.15 -3.55 10.04 22.26 0.22 -3.32 16 9 C -0.11 -3.36 10.05 22.23 0.22 -3.14 16 10 C -0.22 -8.32 7.44 22.41 0.17 -8.15 16 11 C 0.15 5.02 6.18 38.10 0.24 5.25 16 12 N -0.56 -20.83 2.91 -609.54 -1.78 -22.61 16 13 C 0.57 26.21 6.54 86.79 0.57 26.78 16 14 O -0.53 -27.38 13.22 -3.90 -0.05 -27.43 16 15 C -0.13 -6.40 3.31 -20.14 -0.07 -6.46 16 16 C -0.17 -7.33 6.36 22.70 0.14 -7.19 16 17 C -0.10 -3.94 9.88 22.18 0.22 -3.72 16 18 C -0.20 -9.34 9.78 22.77 0.22 -9.11 16 19 C 0.08 4.07 5.50 -21.32 -0.12 3.96 16 20 C -0.50 -26.80 9.04 23.47 0.21 -26.59 16 21 H 0.09 4.31 7.85 -2.91 -0.02 4.29 16 22 C 0.03 1.38 5.31 85.25 0.45 1.83 16 23 N -0.84 -47.58 10.98 21.83 0.24 -47.34 16 24 Si 0.99 39.82 29.56 68.60 2.03 41.85 16 25 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 26 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 27 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 28 C -0.12 -6.43 7.97 23.01 0.18 -6.24 16 29 H 0.04 1.60 7.37 -2.39 -0.02 1.58 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.59 6.32 -2.39 -0.02 1.57 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.10 1.39 8.12 -2.39 -0.02 1.37 16 35 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 38 H 0.12 3.65 8.06 -2.91 -0.02 3.63 16 39 H 0.17 7.29 2.09 -42.77 -0.09 7.20 16 40 H 0.11 4.36 7.98 -2.91 -0.02 4.33 16 41 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 42 H 0.11 4.83 8.06 -2.91 -0.02 4.80 16 43 H 0.28 14.86 8.30 -92.71 -0.77 14.09 16 44 H 0.09 5.63 6.49 -2.91 -0.02 5.61 16 Total: -1.00 -68.13 348.73 5.19 -62.94 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.93 Total: 37.62 kcal Atomic # 6 Polarization: -48.84 SS G_CDS: 3.82 Total: -45.02 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -1.54 Total: -69.94 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.05 Total: -27.43 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -68.13 5.19 -62.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078037317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.476 kcal (2) G-P(sol) polarization free energy of solvation -68.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds