Wall clock time and date at job start Tue Mar 31 2020 13:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47605 * 2 1 4 4 O 1.42906 * 109.46808 * 239.99718 * 2 1 3 5 5 C 1.35946 * 116.99637 * 84.35807 * 4 2 1 6 6 C 1.38708 * 120.02955 * 174.06750 * 5 4 2 7 7 C 1.38147 * 119.97177 * 179.74495 * 6 5 4 8 8 C 1.38458 * 120.02693 * 0.52089 * 7 6 5 9 9 F 1.35103 * 119.96817 * 179.72716 * 8 7 6 10 10 C 1.38456 * 120.06125 * 359.75242 * 8 7 6 11 11 C 1.38151 * 120.02756 * 359.97357 * 10 8 7 12 12 C 1.50701 * 109.46991 * 120.00308 * 2 1 3 13 13 O 1.21292 * 120.00263 * 111.93057 * 12 2 1 14 14 N 1.34777 * 119.99928 * 291.93049 * 12 2 1 15 15 C 1.37100 * 119.99954 * 3.97234 * 14 12 2 16 16 H 1.07999 * 119.99377 * 123.44879 * 15 14 12 17 17 C 1.38944 * 120.00572 * 303.45581 * 15 14 12 18 18 N 1.31415 * 119.99900 * 340.91215 * 17 15 14 19 19 Si 1.86795 * 120.00304 * 160.91208 * 17 15 14 20 20 H 1.48494 * 109.47330 * 89.99968 * 19 17 15 21 21 H 1.48508 * 109.47137 * 209.99984 * 19 17 15 22 22 H 1.48498 * 109.47312 * 329.99733 * 19 17 15 23 23 C 1.46500 * 119.99897 * 183.98074 * 14 12 2 24 24 C 1.55236 * 110.57932 * 231.64033 * 23 14 12 25 25 C 1.54890 * 102.58938 * 203.33816 * 24 23 14 26 26 C 1.54270 * 104.31118 * 37.93586 * 25 24 23 27 27 C 1.53876 * 106.59856 * 336.32136 * 26 25 24 28 28 H 1.09000 * 109.47030 * 65.62322 * 1 2 3 29 29 H 1.08994 * 109.47655 * 185.63126 * 1 2 3 30 30 H 1.09002 * 109.46397 * 305.63246 * 1 2 3 31 31 H 1.08005 * 120.01295 * 359.97438 * 6 5 4 32 32 H 1.07993 * 119.98997 * 180.25451 * 7 6 5 33 33 H 1.07998 * 119.98345 * 179.97438 * 10 8 7 34 34 H 1.08005 * 120.01206 * 180.02562 * 11 10 8 35 35 H 0.97000 * 120.00100 * 179.97438 * 18 17 15 36 36 H 1.08995 * 110.43376 * 354.22807 * 23 14 12 37 37 H 1.08998 * 110.89928 * 85.04596 * 24 23 14 38 38 H 1.08999 * 110.76574 * 321.57202 * 24 23 14 39 39 H 1.08993 * 110.48595 * 279.19142 * 25 24 23 40 40 H 1.09001 * 110.48400 * 156.67637 * 25 24 23 41 41 H 1.08997 * 110.03510 * 95.60637 * 26 25 24 42 42 H 1.09001 * 110.02928 * 216.99220 * 26 25 24 43 43 H 1.08998 * 110.03171 * 119.28261 * 27 26 25 44 44 H 1.09002 * 110.03594 * 240.66953 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0997 0.0594 -2.3078 6 6 2.6688 -0.4952 -3.4447 7 6 2.7583 0.2491 -4.6051 8 6 2.2900 1.5518 -4.6304 9 9 2.3832 2.2805 -5.7643 10 6 1.7269 2.1086 -3.4947 11 6 1.6310 1.3646 -2.3346 12 6 2.0323 -0.7105 1.2304 13 8 2.6043 -1.7748 1.1252 14 7 1.8459 -0.1632 2.4479 15 6 1.1287 0.9984 2.5748 16 1 0.2639 1.0310 3.2208 17 6 1.5144 2.1334 1.8722 18 7 2.7355 2.2279 1.3957 19 14 0.2973 3.5250 1.6050 20 1 0.3948 4.4905 2.7290 21 1 0.6096 4.2175 0.3290 22 1 -1.0800 2.9732 1.5445 23 6 2.4098 -0.8094 3.6356 24 6 1.3179 -1.0025 4.7220 25 6 2.1506 -1.0966 6.0246 26 6 3.2883 -0.0741 5.8246 27 6 3.4532 0.1085 4.3056 28 1 -0.3633 0.4242 -0.9361 29 1 -0.3634 -1.0226 0.1008 30 1 -0.3632 0.5987 0.8353 31 1 3.0384 -1.5099 -3.4238 32 1 3.1976 -0.1839 -5.4915 33 1 1.3624 3.1250 -3.5158 34 1 1.1913 1.7990 -1.4490 35 1 3.0046 3.0201 0.9050 36 1 2.8581 -1.7670 3.3711 37 1 0.7599 -1.9234 4.5530 38 1 0.6476 -0.1436 4.7532 39 1 2.5570 -2.1006 6.1459 40 1 1.5416 -0.8257 6.8871 41 1 3.0224 0.8759 6.2881 42 1 4.2131 -0.4549 6.2581 43 1 3.2672 1.1471 4.0320 44 1 4.4584 -0.1832 4.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078207535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:32 Heat of formation + Delta-G solvation = -92.607694 kcal Electronic energy + Delta-G solvation = -28225.241402 eV Core-core repulsion = 24250.389554 eV Total energy + Delta-G solvation = -3974.851848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.62349 -40.02655 -38.87391 -37.16665 -36.17540 -34.50561 -31.74659 -31.31912 -30.50511 -28.83708 -28.01854 -26.99720 -25.22663 -23.66764 -22.89686 -21.80891 -20.07639 -19.74580 -19.35646 -17.96557 -17.06459 -16.98044 -16.02285 -15.74943 -15.40344 -15.31562 -14.88546 -14.73055 -14.55265 -14.28475 -14.02683 -13.51958 -13.34458 -13.06953 -12.82938 -12.69814 -12.55501 -12.36811 -11.93941 -11.78350 -11.61596 -11.35741 -11.30324 -11.14689 -10.98944 -10.68406 -10.64397 -10.52673 -10.43934 -10.37748 -10.21643 -9.92734 -9.65178 -9.01881 -8.97478 -8.31048 -7.73481 -7.38971 -6.62250 -4.47028 1.37269 1.48347 2.93038 3.05587 3.06162 3.48367 3.83690 3.88563 3.94267 4.51373 4.60777 4.76947 4.93737 5.00135 5.28321 5.31910 5.35038 5.46099 5.53421 5.72380 5.85499 5.88779 6.06991 6.09830 6.11848 6.14834 6.15636 6.22847 6.30300 6.31759 6.35510 6.39111 6.45384 6.48386 6.56588 6.62528 6.66597 6.83725 6.91148 6.97439 7.00716 7.21740 7.27239 7.83355 7.92364 8.42039 8.69482 9.38940 9.82400 10.39386 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.004240 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.664740 B = 6601.945647 C = 7497.202244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.060 3.940 3 H 0.134 0.866 4 O -0.291 6.291 5 C 0.145 3.855 6 C -0.134 4.134 7 C -0.114 4.114 8 C 0.040 3.960 9 F -0.149 7.149 10 C -0.111 4.111 11 C -0.182 4.182 12 C 0.524 3.476 13 O -0.590 6.590 14 N -0.443 5.443 15 C -0.334 4.334 16 H 0.087 0.913 17 C 0.046 3.954 18 N -0.850 5.850 19 Si 0.890 3.110 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.261 1.261 23 C 0.137 3.863 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.119 4.119 27 C -0.125 4.125 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.274 0.726 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.810 0.241 -2.191 3.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 H 0.151 0.849 4 O -0.203 6.203 5 C 0.097 3.903 6 C -0.152 4.152 7 C -0.133 4.133 8 C 0.021 3.979 9 F -0.128 7.128 10 C -0.129 4.129 11 C -0.200 4.200 12 C 0.313 3.687 13 O -0.474 6.474 14 N -0.164 5.164 15 C -0.462 4.462 16 H 0.105 0.895 17 C -0.161 4.161 18 N -0.486 5.486 19 Si 0.714 3.286 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.185 1.185 23 C 0.034 3.966 24 C -0.165 4.165 25 C -0.159 4.159 26 C -0.157 4.157 27 C -0.163 4.163 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.342 -0.342 -2.313 3.309 hybrid contribution -0.458 1.357 -0.227 1.450 sum -2.800 1.015 -2.540 3.914 Atomic orbital electron populations 1.22329 0.94262 1.03161 1.03160 1.22871 0.94806 1.00071 0.82076 0.84918 1.86139 1.80088 1.38034 1.16050 1.19169 0.93373 0.90177 0.87542 1.20278 1.03036 1.01466 0.90455 1.20836 1.01020 0.92639 0.98789 1.17494 1.06300 0.90974 0.83138 1.91445 1.94880 1.77332 1.49104 1.20893 0.99886 1.00560 0.91609 1.21308 1.05164 0.94328 0.99238 1.19756 0.80372 0.84061 0.84559 1.90540 1.46766 1.23303 1.86743 1.43104 1.48285 1.22137 1.02877 1.19193 1.08731 0.87366 1.30956 0.89518 1.25694 0.95324 0.97848 0.97200 1.70001 1.15271 1.29356 1.33977 0.86518 0.81616 0.81561 0.78896 1.19647 1.20028 1.18482 1.21853 0.92821 0.96052 0.85921 1.22787 0.98146 1.01505 0.94105 1.22271 0.97171 0.98840 0.97620 1.22065 0.97652 0.98671 0.97284 1.22356 0.98113 1.02881 0.92980 0.92966 0.92491 0.88199 0.84313 0.84565 0.84958 0.84236 0.91508 0.90146 0.92579 0.90274 0.92351 0.92415 0.92393 0.92966 0.89217 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 8.74 37.16 0.32 -2.99 16 2 C 0.06 1.34 1.75 -27.88 -0.05 1.29 16 3 H 0.13 3.03 2.80 -51.93 -0.15 2.89 16 4 O -0.29 -6.45 9.35 -39.35 -0.37 -6.82 16 5 C 0.14 2.74 6.57 -39.24 -0.26 2.48 16 6 C -0.13 -2.15 9.98 -39.44 -0.39 -2.54 16 7 C -0.11 -1.63 10.02 -39.53 -0.40 -2.02 16 8 C 0.04 0.61 7.30 -39.42 -0.29 0.32 16 9 F -0.15 -2.22 17.27 2.25 0.04 -2.18 16 10 C -0.11 -1.73 10.02 -39.53 -0.40 -2.12 16 11 C -0.18 -3.21 8.18 -39.44 -0.32 -3.53 16 12 C 0.52 13.11 6.65 -10.98 -0.07 13.04 16 13 O -0.59 -16.34 15.89 -14.23 -0.23 -16.56 16 14 N -0.44 -10.27 2.41 -105.77 -0.26 -10.53 16 15 C -0.33 -7.45 5.28 -14.93 -0.08 -7.53 16 16 H 0.09 1.87 6.80 -52.49 -0.36 1.52 16 17 C 0.05 1.01 3.27 -17.47 -0.06 0.96 16 18 N -0.85 -20.23 11.47 55.50 0.64 -19.60 16 19 Si 0.89 17.13 28.84 -169.99 -4.90 12.23 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 23 C 0.14 2.89 3.25 -66.08 -0.22 2.67 16 24 C -0.13 -2.23 6.41 -24.55 -0.16 -2.39 16 25 C -0.12 -1.80 6.82 -25.07 -0.17 -1.97 16 26 C -0.12 -1.88 6.80 -25.61 -0.17 -2.05 16 27 C -0.12 -2.47 6.43 -25.61 -0.16 -2.63 16 28 H 0.05 0.89 6.90 -51.93 -0.36 0.53 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.93 5.16 -51.93 -0.27 1.66 16 31 H 0.14 2.03 8.06 -52.48 -0.42 1.60 16 32 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.14 2.54 5.47 -52.48 -0.29 2.25 16 35 H 0.27 6.25 8.31 -40.82 -0.34 5.91 16 36 H 0.08 1.82 6.99 -51.93 -0.36 1.45 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.08 1.43 6.43 -51.93 -0.33 1.09 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.09 2.00 7.26 -51.93 -0.38 1.63 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -26.63 351.32 -8.50 -35.14 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.85 Total: 12.05 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.87 Total: -9.02 kcal Atomic # 7 Polarization: -30.50 SS G_CDS: 0.38 Total: -30.12 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.59 Total: -23.38 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -4.90 Total: 12.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -26.63 -8.50 -35.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.470 kcal (2) G-P(sol) polarization free energy of solvation -26.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds