Wall clock time and date at job start Tue Mar 31 2020 13:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47605 * 2 1 4 4 O 1.42906 * 109.46808 * 239.99718 * 2 1 3 5 5 C 1.35946 * 116.99637 * 84.35807 * 4 2 1 6 6 C 1.38708 * 120.02955 * 174.06750 * 5 4 2 7 7 C 1.38147 * 119.97177 * 179.74495 * 6 5 4 8 8 C 1.38458 * 120.02693 * 0.52089 * 7 6 5 9 9 F 1.35103 * 119.96817 * 179.72716 * 8 7 6 10 10 C 1.38456 * 120.06125 * 359.75242 * 8 7 6 11 11 C 1.38151 * 120.02756 * 359.97357 * 10 8 7 12 12 C 1.50701 * 109.46991 * 120.00308 * 2 1 3 13 13 O 1.21292 * 120.00263 * 111.93057 * 12 2 1 14 14 N 1.34777 * 119.99928 * 291.93049 * 12 2 1 15 15 C 1.37100 * 119.99954 * 3.97234 * 14 12 2 16 16 H 1.07999 * 119.99377 * 123.44879 * 15 14 12 17 17 C 1.38944 * 120.00572 * 303.45581 * 15 14 12 18 18 N 1.31415 * 119.99900 * 340.91215 * 17 15 14 19 19 Si 1.86795 * 120.00304 * 160.91208 * 17 15 14 20 20 H 1.48494 * 109.47330 * 89.99968 * 19 17 15 21 21 H 1.48508 * 109.47137 * 209.99984 * 19 17 15 22 22 H 1.48498 * 109.47312 * 329.99733 * 19 17 15 23 23 C 1.46500 * 119.99897 * 183.98074 * 14 12 2 24 24 C 1.55236 * 110.57932 * 231.64033 * 23 14 12 25 25 C 1.54890 * 102.58938 * 203.33816 * 24 23 14 26 26 C 1.54270 * 104.31118 * 37.93586 * 25 24 23 27 27 C 1.53876 * 106.59856 * 336.32136 * 26 25 24 28 28 H 1.09000 * 109.47030 * 65.62322 * 1 2 3 29 29 H 1.08994 * 109.47655 * 185.63126 * 1 2 3 30 30 H 1.09002 * 109.46397 * 305.63246 * 1 2 3 31 31 H 1.08005 * 120.01295 * 359.97438 * 6 5 4 32 32 H 1.07993 * 119.98997 * 180.25451 * 7 6 5 33 33 H 1.07998 * 119.98345 * 179.97438 * 10 8 7 34 34 H 1.08005 * 120.01206 * 180.02562 * 11 10 8 35 35 H 0.97000 * 120.00100 * 179.97438 * 18 17 15 36 36 H 1.08995 * 110.43376 * 354.22807 * 23 14 12 37 37 H 1.08998 * 110.89928 * 85.04596 * 24 23 14 38 38 H 1.08999 * 110.76574 * 321.57202 * 24 23 14 39 39 H 1.08993 * 110.48595 * 279.19142 * 25 24 23 40 40 H 1.09001 * 110.48400 * 156.67637 * 25 24 23 41 41 H 1.08997 * 110.03510 * 95.60637 * 26 25 24 42 42 H 1.09001 * 110.02928 * 216.99220 * 26 25 24 43 43 H 1.08998 * 110.03171 * 119.28261 * 27 26 25 44 44 H 1.09002 * 110.03594 * 240.66953 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0997 0.0594 -2.3078 6 6 2.6688 -0.4952 -3.4447 7 6 2.7583 0.2491 -4.6051 8 6 2.2900 1.5518 -4.6304 9 9 2.3832 2.2805 -5.7643 10 6 1.7269 2.1086 -3.4947 11 6 1.6310 1.3646 -2.3346 12 6 2.0323 -0.7105 1.2304 13 8 2.6043 -1.7748 1.1252 14 7 1.8459 -0.1632 2.4479 15 6 1.1287 0.9984 2.5748 16 1 0.2639 1.0310 3.2208 17 6 1.5144 2.1334 1.8722 18 7 2.7355 2.2279 1.3957 19 14 0.2973 3.5250 1.6050 20 1 0.3948 4.4905 2.7290 21 1 0.6096 4.2175 0.3290 22 1 -1.0800 2.9732 1.5445 23 6 2.4098 -0.8094 3.6356 24 6 1.3179 -1.0025 4.7220 25 6 2.1506 -1.0966 6.0246 26 6 3.2883 -0.0741 5.8246 27 6 3.4532 0.1085 4.3056 28 1 -0.3633 0.4242 -0.9361 29 1 -0.3634 -1.0226 0.1008 30 1 -0.3632 0.5987 0.8353 31 1 3.0384 -1.5099 -3.4238 32 1 3.1976 -0.1839 -5.4915 33 1 1.3624 3.1250 -3.5158 34 1 1.1913 1.7990 -1.4490 35 1 3.0046 3.0201 0.9050 36 1 2.8581 -1.7670 3.3711 37 1 0.7599 -1.9234 4.5530 38 1 0.6476 -0.1436 4.7532 39 1 2.5570 -2.1006 6.1459 40 1 1.5416 -0.8257 6.8871 41 1 3.0224 0.8759 6.2881 42 1 4.2131 -0.4549 6.2581 43 1 3.2672 1.1471 4.0320 44 1 4.4584 -0.1832 4.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078207535.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:31 Heat of formation + Delta-G solvation = -104.201446 kcal Electronic energy + Delta-G solvation = -28225.744145 eV Core-core repulsion = 24250.389554 eV Total energy + Delta-G solvation = -3975.354590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.83032 -41.59253 -40.47920 -38.64298 -37.76128 -36.27517 -33.45569 -32.80923 -31.89811 -30.18623 -29.47404 -28.54094 -27.00484 -25.22231 -24.20902 -23.20180 -21.59128 -21.34977 -20.90994 -19.40053 -18.67863 -18.34596 -17.55762 -17.38381 -16.93138 -16.68342 -16.38134 -16.27314 -16.06349 -15.66750 -15.51306 -15.11055 -14.75857 -14.44153 -14.19686 -14.16730 -14.12944 -13.80198 -13.47268 -13.32821 -13.14869 -13.08170 -12.80566 -12.64469 -12.54245 -12.20802 -12.01942 -11.97191 -11.86368 -11.82523 -11.75070 -11.35564 -11.19634 -10.78052 -10.24592 -10.12428 -9.24101 -9.06742 -8.36552 -6.27300 0.12971 0.18196 1.38846 1.47520 1.56050 1.88435 2.10140 2.29996 2.55124 2.89040 3.13307 3.27952 3.69052 3.78508 3.86955 3.90250 4.02100 4.11217 4.19693 4.24114 4.31589 4.44269 4.56477 4.62828 4.68480 4.73586 4.79767 4.81885 4.83731 4.91859 4.96446 5.07196 5.07928 5.09800 5.17280 5.23953 5.25660 5.30100 5.41675 5.47600 5.56603 5.58417 5.72035 6.08917 6.41291 6.61582 6.93555 7.54036 8.00873 8.66165 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.004240 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.664740 B = 6601.945647 C = 7497.202244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.065 3.935 3 H 0.128 0.872 4 O -0.319 6.319 5 C 0.112 3.888 6 C -0.136 4.136 7 C -0.100 4.100 8 C 0.043 3.957 9 F -0.143 7.143 10 C -0.110 4.110 11 C -0.190 4.190 12 C 0.499 3.501 13 O -0.634 6.634 14 N -0.441 5.441 15 C -0.342 4.342 16 H 0.096 0.904 17 C 0.021 3.979 18 N -0.881 5.881 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.273 1.273 22 H -0.245 1.245 23 C 0.121 3.879 24 C -0.119 4.119 25 C -0.111 4.111 26 C -0.111 4.111 27 C -0.119 4.119 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.149 0.851 32 H 0.172 0.828 33 H 0.154 0.846 34 H 0.130 0.870 35 H 0.275 0.725 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.909 1.287 -2.307 4.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.007 3.993 3 H 0.145 0.855 4 O -0.232 6.232 5 C 0.065 3.935 6 C -0.154 4.154 7 C -0.118 4.118 8 C 0.024 3.976 9 F -0.122 7.122 10 C -0.129 4.129 11 C -0.209 4.209 12 C 0.289 3.711 13 O -0.521 6.521 14 N -0.160 5.160 15 C -0.469 4.469 16 H 0.114 0.886 17 C -0.183 4.183 18 N -0.517 5.517 19 Si 0.763 3.237 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.168 1.168 23 C 0.018 3.982 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.149 4.149 27 C -0.158 4.158 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.167 0.833 32 H 0.190 0.810 33 H 0.171 0.829 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.459 0.721 -2.409 4.276 hybrid contribution -0.028 1.054 -0.275 1.089 sum -3.487 1.774 -2.684 4.744 Atomic orbital electron populations 1.22251 0.92354 1.03161 1.04195 1.22739 0.96227 0.99009 0.81372 0.85508 1.86079 1.81109 1.39177 1.16871 1.19550 0.95537 0.91046 0.87330 1.20514 1.02507 1.02226 0.90187 1.21154 0.99573 0.92010 0.99111 1.17604 1.05653 0.91290 0.83058 1.91466 1.94769 1.77256 1.48730 1.21083 0.99461 1.01328 0.90990 1.21244 1.05805 0.94121 0.99723 1.20467 0.80566 0.84008 0.86052 1.90481 1.49005 1.25166 1.87492 1.43327 1.47451 1.22169 1.03084 1.19429 1.09026 0.87121 1.31367 0.88614 1.26275 0.96229 0.99571 0.96265 1.70103 1.17056 1.30013 1.34527 0.85729 0.80475 0.78872 0.78635 1.19795 1.19773 1.16811 1.22099 0.94664 0.95065 0.86395 1.22723 0.97310 1.01488 0.94210 1.22259 0.96484 0.99273 0.96854 1.22027 0.99224 0.99802 0.93825 1.22250 0.96784 1.00537 0.96193 0.90888 0.92753 0.88209 0.83282 0.81039 0.82877 0.85237 0.91561 0.92644 0.92175 0.90610 0.91132 0.89544 0.91362 0.91000 0.92057 0.94829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.32 8.74 71.98 0.63 -5.69 16 2 C 0.06 2.98 1.75 29.85 0.05 3.04 16 3 H 0.13 5.97 2.80 -2.39 -0.01 5.97 16 4 O -0.32 -14.70 9.35 -74.04 -0.69 -15.39 16 5 C 0.11 4.26 6.57 22.49 0.15 4.41 16 6 C -0.14 -4.26 9.98 22.36 0.22 -4.04 16 7 C -0.10 -2.61 10.02 22.30 0.22 -2.38 16 8 C 0.04 1.21 7.30 22.37 0.16 1.37 16 9 F -0.14 -3.85 17.27 44.97 0.78 -3.07 16 10 C -0.11 -3.25 10.02 22.30 0.22 -3.02 16 11 C -0.19 -6.66 8.18 22.36 0.18 -6.48 16 12 C 0.50 26.19 6.65 87.66 0.58 26.78 16 13 O -0.63 -37.24 15.89 15.84 0.25 -36.99 16 14 N -0.44 -21.18 2.41 -606.94 -1.47 -22.64 16 15 C -0.34 -15.40 5.28 84.04 0.44 -14.95 16 16 H 0.10 4.09 6.80 -2.91 -0.02 4.07 16 17 C 0.02 0.92 3.27 84.92 0.28 1.20 16 18 N -0.88 -42.94 11.47 21.66 0.25 -42.69 16 19 Si 0.94 34.34 28.84 68.60 1.98 36.32 16 20 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.24 -8.29 7.11 99.48 0.71 -7.58 16 23 C 0.12 5.26 3.25 46.19 0.15 5.41 16 24 C -0.12 -4.10 6.41 32.01 0.21 -3.90 16 25 C -0.11 -3.02 6.82 31.67 0.22 -2.81 16 26 C -0.11 -3.33 6.80 31.32 0.21 -3.11 16 27 C -0.12 -4.82 6.43 31.32 0.20 -4.62 16 28 H 0.07 2.48 6.90 -2.39 -0.02 2.46 16 29 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 3.83 5.16 -2.39 -0.01 3.81 16 31 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 32 H 0.17 3.22 8.06 -2.91 -0.02 3.20 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.13 4.74 5.47 -2.91 -0.02 4.73 16 35 H 0.27 12.78 8.31 -92.71 -0.77 12.01 16 36 H 0.06 2.65 6.99 -2.39 -0.02 2.64 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 2.66 6.43 -2.39 -0.02 2.64 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.06 2.82 7.26 -2.39 -0.02 2.80 16 44 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -60.30 351.32 6.26 -54.04 By element: Atomic # 1 Polarization: 38.20 SS G_CDS: 1.02 Total: 39.22 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.14 Total: -8.80 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -1.22 Total: -65.33 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.44 Total: -52.38 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 1.98 Total: 36.32 kcal Total: -60.30 6.26 -54.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078207535.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.158 kcal (2) G-P(sol) polarization free energy of solvation -60.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds