Wall clock time and date at job start Tue Mar 31 2020 13:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47564 * 2 1 4 4 C 1.52997 * 109.47274 * 239.99823 * 2 1 3 5 5 C 1.50708 * 109.47129 * 65.00110 * 4 2 1 6 6 O 1.21277 * 119.99627 * 0.02562 * 5 4 2 7 7 C 1.46975 * 120.00194 * 180.02562 * 5 4 2 8 8 C 1.39961 * 120.19570 * 0.02562 * 7 5 4 9 9 C 1.37763 * 119.84969 * 180.30024 * 8 7 5 10 10 C 1.38526 * 120.25003 * 359.41375 * 9 8 7 11 11 C 1.38223 * 120.40152 * 0.60941 * 10 9 8 12 12 C 1.38285 * 120.14258 * 359.67457 * 11 10 9 13 13 F 1.35093 * 120.12796 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47430 * 120.00014 * 2 1 3 15 15 O 1.21283 * 120.00286 * 119.99299 * 14 2 1 16 16 N 1.34778 * 119.99549 * 300.00100 * 14 2 1 17 17 C 1.46491 * 120.00293 * 359.97438 * 16 14 2 18 18 C 1.46504 * 119.99478 * 179.97438 * 16 14 2 19 19 H 1.08995 * 109.47507 * 359.97438 * 18 16 14 20 20 C 1.53000 * 109.46989 * 239.99666 * 18 16 14 21 21 C 1.50700 * 109.46631 * 120.00278 * 18 16 14 22 22 H 1.07997 * 120.00715 * 359.97438 * 21 18 16 23 23 C 1.37882 * 119.99420 * 179.97438 * 21 18 16 24 24 N 1.31508 * 120.00240 * 359.97438 * 23 21 18 25 25 Si 1.86803 * 119.99446 * 179.97438 * 23 21 18 26 26 H 1.48493 * 109.47574 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47003 * 120.00003 * 25 23 21 28 28 H 1.48503 * 109.47032 * 239.99572 * 25 23 21 29 29 H 1.09001 * 109.46971 * 300.00275 * 1 2 3 30 30 H 1.09003 * 109.47060 * 60.00073 * 1 2 3 31 31 H 1.08996 * 109.47564 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47151 * 305.00052 * 4 2 1 33 33 H 1.08998 * 109.47718 * 184.99787 * 4 2 1 34 34 H 1.08002 * 120.07201 * 0.02562 * 8 7 5 35 35 H 1.08002 * 119.87320 * 179.72200 * 9 8 7 36 36 H 1.07996 * 119.80106 * 180.30421 * 10 9 8 37 37 H 1.07995 * 119.93380 * 179.69848 * 11 10 9 38 38 H 1.09004 * 109.47446 * 89.99790 * 17 16 14 39 39 H 1.09003 * 109.47731 * 210.00223 * 17 16 14 40 40 H 1.09004 * 109.47453 * 329.99998 * 17 16 14 41 41 H 1.09004 * 109.47275 * 300.00258 * 20 18 16 42 42 H 1.09003 * 109.46836 * 60.00343 * 20 18 16 43 43 H 1.09003 * 109.47051 * 180.02562 * 20 18 16 44 44 H 0.97009 * 119.99724 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0117 1.0874 -2.3633 7 6 2.0155 -0.4326 -3.8110 8 6 2.7416 -1.6214 -3.9465 9 6 3.0939 -2.0705 -5.2003 10 6 2.7218 -1.3563 -6.3275 11 6 2.0050 -0.1808 -6.2057 12 6 1.6477 0.2882 -4.9548 13 9 0.9467 1.4370 -4.8361 14 6 2.0323 -0.7104 1.2305 15 8 2.7295 -1.6966 1.1192 16 7 1.7067 -0.2499 2.4545 17 6 0.8649 0.9415 2.5890 18 6 2.1947 -0.9408 3.6507 19 1 2.7996 -1.7976 3.3541 20 6 1.0044 -1.4213 4.4834 21 6 3.0321 0.0061 4.4712 22 1 3.1858 1.0208 4.1351 23 6 3.6020 -0.4232 5.6510 24 7 3.4144 -1.6587 6.0606 25 14 4.6406 0.7503 6.6677 26 1 4.6975 2.0721 5.9934 27 1 4.0354 0.9069 8.0147 28 1 6.0151 0.2046 6.8030 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6053 -1.7198 -1.2951 33 1 3.1262 -0.7995 -1.2056 34 1 3.0288 -2.1830 -3.0699 35 1 3.6581 -2.9855 -5.3051 36 1 2.9977 -1.7176 -7.3071 37 1 1.7231 0.3725 -7.0892 38 1 -0.1832 0.6440 2.6221 39 1 1.1228 1.4668 3.5086 40 1 1.0288 1.6003 1.7361 41 1 0.3991 -0.5646 4.7801 42 1 0.3987 -2.1061 3.8899 43 1 1.3674 -1.9350 5.3736 44 1 3.8151 -1.9606 6.8909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080028079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:50 Heat of formation + Delta-G solvation = -109.014924 kcal Electronic energy + Delta-G solvation = -26953.927063 eV Core-core repulsion = 22978.363744 eV Total energy + Delta-G solvation = -3975.563319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.98149 -41.49298 -40.52173 -39.21942 -37.19350 -35.56938 -34.51368 -32.85926 -31.47933 -31.25265 -28.94818 -27.72018 -27.29928 -25.56847 -24.66428 -23.52376 -22.34588 -20.79090 -19.76308 -18.81682 -18.45187 -18.19140 -17.51223 -17.33345 -17.01961 -16.86168 -16.40644 -16.23150 -15.82531 -15.56817 -15.48961 -15.06060 -14.79037 -14.47195 -14.37145 -14.12391 -13.78885 -13.60796 -13.57998 -13.30808 -12.99818 -12.97129 -12.90880 -12.77458 -12.68332 -12.64048 -12.31397 -12.21358 -12.11428 -12.09896 -11.88214 -11.17964 -10.79919 -10.57982 -10.38691 -10.15873 -9.80021 -9.31805 -8.14970 -6.31085 -0.50588 0.17253 1.30853 1.40127 1.41913 1.53105 1.79759 2.25801 2.45250 2.62537 2.89681 3.12961 3.16602 3.50608 3.69430 3.84629 3.96344 4.00022 4.13076 4.24984 4.28696 4.37746 4.50795 4.62555 4.65179 4.74190 4.76926 4.79667 4.89568 4.91937 5.00773 5.01552 5.05011 5.06305 5.07712 5.22607 5.29685 5.36745 5.48476 5.60402 5.67793 5.81565 6.03983 6.17146 6.41216 6.76800 6.83313 7.31000 7.47501 8.89498 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.002659 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.927731 B =10527.329280 C =10836.908018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.101 0.899 4 C -0.138 4.138 5 C 0.401 3.599 6 O -0.469 6.469 7 C -0.226 4.226 8 C -0.047 4.047 9 C -0.138 4.138 10 C -0.048 4.048 11 C -0.172 4.172 12 C 0.123 3.877 13 F -0.139 7.139 14 C 0.502 3.498 15 O -0.597 6.597 16 N -0.598 5.598 17 C 0.079 3.921 18 C 0.261 3.739 19 H 0.013 0.987 20 C -0.132 4.132 21 C -0.538 4.538 22 H 0.059 0.941 23 C 0.016 3.984 24 N -0.916 5.916 25 Si 0.964 3.036 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.284 1.284 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.020 0.980 43 H 0.068 0.932 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.058 1.208 -24.527 24.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 H 0.119 0.881 4 C -0.176 4.176 5 C 0.280 3.720 6 O -0.346 6.346 7 C -0.228 4.228 8 C -0.065 4.065 9 C -0.156 4.156 10 C -0.065 4.065 11 C -0.190 4.190 12 C 0.104 3.896 13 F -0.118 7.118 14 C 0.291 3.709 15 O -0.479 6.479 16 N -0.327 5.327 17 C -0.063 4.063 18 C 0.159 3.841 19 H 0.031 0.969 20 C -0.190 4.190 21 C -0.577 4.577 22 H 0.077 0.923 23 C -0.184 4.184 24 N -0.555 5.555 25 Si 0.789 3.211 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.210 1.210 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.172 0.828 35 H 0.185 0.815 36 H 0.193 0.807 37 H 0.177 0.823 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.036 1.190 -24.327 24.688 hybrid contribution 0.496 0.620 1.100 1.357 sum -3.540 1.810 -23.227 23.564 Atomic orbital electron populations 1.22082 0.91558 1.02733 1.04582 1.21006 0.98998 1.00326 0.90802 0.88116 1.21779 1.04203 1.00818 0.90762 1.22488 0.75408 0.84134 0.89958 1.90528 1.31701 1.23212 1.89199 1.20673 1.08389 1.00419 0.93319 1.21735 0.92234 0.92137 1.00419 1.21668 1.00779 1.01970 0.91201 1.21765 0.92065 0.91523 1.01190 1.21489 1.02486 0.99636 0.95404 1.18403 0.93447 0.82833 0.94951 1.91525 1.76064 1.47216 1.96980 1.21126 0.79826 0.84452 0.85530 1.90594 1.40944 1.29155 1.87211 1.48181 1.49632 1.28837 1.06097 1.21972 0.94193 0.86865 1.03308 1.18548 0.92211 0.92075 0.81246 0.96919 1.21868 0.96980 0.99277 1.00907 1.21610 1.31475 0.98252 1.06338 0.92288 1.25711 0.97349 0.96780 0.98533 1.70023 1.45112 1.17337 1.23060 0.85426 0.78164 0.79016 0.78516 1.19105 1.20006 1.21005 0.90102 0.90291 0.92654 0.86737 0.87344 0.82824 0.81501 0.80745 0.82319 0.91205 0.91350 0.89841 0.93680 0.96054 0.91362 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 8.57 71.98 0.62 -3.49 16 2 C -0.09 -2.78 1.57 -11.54 -0.02 -2.80 16 3 H 0.10 3.06 7.21 -2.39 -0.02 3.04 16 4 C -0.14 -3.66 3.13 29.85 0.09 -3.56 16 5 C 0.40 10.44 6.83 27.98 0.19 10.63 16 6 O -0.47 -14.66 12.96 -3.02 -0.04 -14.70 16 7 C -0.23 -4.90 5.87 -20.12 -0.12 -5.02 16 8 C -0.05 -0.73 9.47 22.57 0.21 -0.51 16 9 C -0.14 -1.36 10.02 22.23 0.22 -1.14 16 10 C -0.05 -0.41 10.03 22.33 0.22 -0.18 16 11 C -0.17 -2.33 10.01 22.28 0.22 -2.11 16 12 C 0.12 2.66 7.29 22.74 0.17 2.83 16 13 F -0.14 -3.77 15.55 44.97 0.70 -3.07 16 14 C 0.50 20.73 7.08 87.66 0.62 21.35 16 15 O -0.60 -29.11 15.25 -3.04 -0.05 -29.16 16 16 N -0.60 -25.74 2.75 -826.79 -2.28 -28.01 16 17 C 0.08 2.63 7.80 127.77 1.00 3.63 16 18 C 0.26 13.71 2.64 44.24 0.12 13.82 16 19 H 0.01 0.80 6.90 -2.39 -0.02 0.78 16 20 C -0.13 -6.42 8.97 71.98 0.65 -5.78 16 21 C -0.54 -29.55 7.99 25.60 0.20 -29.35 16 22 H 0.06 3.17 7.33 -2.91 -0.02 3.15 16 23 C 0.02 0.87 5.30 84.66 0.45 1.32 16 24 N -0.92 -52.91 11.32 21.45 0.24 -52.66 16 25 Si 0.96 43.38 29.54 68.60 2.03 45.40 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 28 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 29 H 0.08 2.05 4.53 -2.39 -0.01 2.04 16 30 H 0.08 2.10 5.95 -2.39 -0.01 2.08 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.11 2.81 8.09 -2.39 -0.02 2.79 16 33 H 0.11 2.87 7.90 -2.39 -0.02 2.85 16 34 H 0.15 2.06 7.05 -2.91 -0.02 2.04 16 35 H 0.17 0.66 8.06 -2.91 -0.02 0.63 16 36 H 0.18 0.18 8.06 -2.91 -0.02 0.16 16 37 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.07 2.01 6.95 -2.38 -0.02 1.99 16 39 H 0.07 2.44 7.02 -2.39 -0.02 2.42 16 40 H 0.08 2.34 6.01 -2.39 -0.01 2.33 16 41 H 0.04 2.00 7.67 -2.38 -0.02 1.98 16 42 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 44 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -73.78 358.72 6.48 -67.30 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.02 Total: 15.24 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 4.85 Total: -0.35 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -2.03 Total: -80.68 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.09 Total: -43.85 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.70 Total: -3.07 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -73.78 6.48 -67.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080028079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.713 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds