Wall clock time and date at job start Tue Mar 31 2020 13:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.50696 * 109.47123 * 119.99718 * 2 1 3 5 5 H 1.08006 * 120.00027 * 120.00219 * 4 2 1 6 6 C 1.37882 * 120.00309 * 300.00484 * 4 2 1 7 7 N 1.31513 * 119.99864 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00251 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47356 * 89.99809 * 8 6 4 10 10 H 1.48494 * 109.47067 * 209.99960 * 8 6 4 11 11 H 1.48503 * 109.46948 * 330.00073 * 8 6 4 12 12 N 1.46493 * 109.47298 * 240.00244 * 2 1 3 13 13 C 1.46503 * 119.99941 * 299.99722 * 12 2 1 14 14 C 1.34780 * 120.00159 * 120.00103 * 12 2 1 15 15 O 1.21275 * 120.00081 * 359.97438 * 14 12 2 16 16 C 1.50705 * 119.99773 * 179.97438 * 14 12 2 17 17 N 1.46900 * 109.47071 * 179.97438 * 16 14 12 18 18 C 1.46902 * 111.00009 * 293.95565 * 17 16 14 19 19 C 1.39670 * 111.00170 * 170.00110 * 17 16 14 20 20 C 1.38929 * 120.07513 * 59.99922 * 19 17 16 21 21 C 1.38085 * 119.92665 * 179.97438 * 20 19 17 22 22 C 1.38305 * 120.07270 * 0.02562 * 21 20 19 23 23 C 1.38262 * 120.14957 * 0.02562 * 22 21 20 24 24 C 1.38127 * 120.07682 * 359.96302 * 23 22 21 25 25 N 1.48002 * 120.03558 * 180.02562 * 24 23 22 26 26 O 1.21798 * 120.00377 * 0.02562 * 25 24 23 27 27 O 1.21806 * 119.99522 * 179.97438 * 25 24 23 28 28 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47467 * 299.99834 * 1 2 3 30 30 H 1.09006 * 109.47206 * 60.00073 * 1 2 3 31 31 H 0.96994 * 119.99956 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.46952 * 270.00149 * 13 12 2 33 33 H 1.08998 * 109.46906 * 29.99805 * 13 12 2 34 34 H 1.09001 * 109.47467 * 150.00381 * 13 12 2 35 35 H 1.09005 * 109.47248 * 60.00009 * 16 14 12 36 36 H 1.09000 * 109.47189 * 300.00074 * 16 14 12 37 37 H 1.09000 * 109.46886 * 296.04564 * 18 17 16 38 38 H 1.09006 * 109.47136 * 56.04606 * 18 17 16 39 39 H 1.08995 * 109.47341 * 176.04281 * 18 17 16 40 40 H 1.07998 * 120.03900 * 0.25670 * 20 19 17 41 41 H 1.07995 * 119.96078 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.92277 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.96251 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5458 4.4125 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5661 3.7120 12 7 2.0183 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2961 -0.7461 -3.3135 17 7 4.1116 0.1774 -4.1134 18 6 3.2926 1.2715 -4.6520 19 6 4.7768 -0.5007 -5.1374 20 6 4.0519 -1.1910 -6.1008 21 6 4.7127 -1.8599 -7.1121 22 6 6.0946 -1.8438 -7.1662 23 6 6.8191 -1.1587 -6.2084 24 6 6.1644 -0.4873 -5.1942 25 7 6.9408 0.2462 -4.1697 26 8 8.1577 0.2584 -4.2208 27 8 6.3628 0.8385 -3.2760 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.7094 1.1618 3.4844 32 1 2.4159 -2.7376 -0.9716 33 1 0.6905 -2.3002 -0.9846 34 1 1.6239 -2.2852 -2.5002 35 1 2.4485 -1.0891 -3.9069 36 1 3.9018 -1.6023 -3.0165 37 1 2.5519 0.8657 -5.3411 38 1 2.7857 1.7828 -3.8336 39 1 3.9323 1.9779 -5.1809 40 1 2.9727 -1.2005 -6.0616 41 1 4.1497 -2.3970 -7.8611 42 1 6.6089 -2.3681 -7.9580 43 1 7.8981 -1.1484 -6.2533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080028084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:09 Heat of formation + Delta-G solvation = 25.731041 kcal Electronic energy + Delta-G solvation = -27786.825583 eV Core-core repulsion = 23837.025249 eV Total energy + Delta-G solvation = -3949.800333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95930 -40.31003 -39.01350 -36.85302 -36.01355 -35.13310 -32.85964 -32.20927 -30.69680 -29.73034 -27.78197 -26.50463 -26.10061 -25.24606 -25.07167 -22.74971 -21.92947 -20.77362 -19.18302 -18.33252 -18.22399 -17.33232 -17.19030 -16.58953 -16.07387 -15.92872 -15.56271 -15.24534 -14.96653 -14.74532 -14.48341 -13.96542 -13.61232 -13.14704 -12.89339 -12.66735 -12.63287 -12.52362 -12.15293 -11.79891 -11.67214 -11.51955 -11.34993 -11.19958 -11.01332 -10.86188 -10.79986 -10.71116 -10.66875 -10.21378 -10.13513 -9.90148 -9.50501 -9.16093 -9.02388 -8.49242 -8.35576 -7.56313 -6.03845 -4.11338 -0.17827 0.52483 1.41475 1.59746 2.93716 3.22980 3.30927 3.36627 3.37768 3.40977 4.00773 4.14743 4.29349 4.44021 4.48472 4.55614 4.65929 4.98355 5.06659 5.11843 5.24611 5.28237 5.37357 5.43367 5.47515 5.59815 5.65602 5.66776 5.93968 6.01961 6.14370 6.25835 6.55787 6.59835 6.75720 6.81441 6.97042 7.06511 7.44788 7.54857 7.74427 7.96342 8.04125 8.22617 8.53920 8.87502 9.09097 9.55199 11.01556 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017966 B = 0.003416 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.105577 B = 8194.237055 C = 8770.914250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.595 5.595 13 C 0.086 3.914 14 C 0.507 3.493 15 O -0.521 6.521 16 C 0.044 3.956 17 N -0.482 5.482 18 C 0.028 3.972 19 C 0.163 3.837 20 C -0.155 4.155 21 C -0.062 4.062 22 C -0.126 4.126 23 C -0.055 4.055 24 C -0.026 4.026 25 N 0.019 4.981 26 O -0.208 6.208 27 O -0.073 6.073 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.025 0.975 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -8.081 -22.249 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.328 5.328 13 C -0.058 4.058 14 C 0.292 3.708 15 O -0.397 6.397 16 C -0.085 4.085 17 N -0.203 5.203 18 C -0.117 4.117 19 C 0.067 3.933 20 C -0.175 4.175 21 C -0.081 4.081 22 C -0.144 4.144 23 C -0.074 4.074 24 C -0.110 4.110 25 N 0.542 4.458 26 O -0.408 6.408 27 O -0.308 6.308 28 H 0.048 0.952 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.044 0.956 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.163 0.837 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.163 -7.507 -22.208 23.809 hybrid contribution -0.073 -0.911 0.587 1.086 sum 4.091 -8.418 -21.621 23.560 Atomic orbital electron populations 1.22099 0.98329 0.99245 1.00820 1.18927 0.90663 0.94613 0.79796 0.91696 1.21313 1.31691 1.12983 0.90314 0.92358 1.24879 0.94925 0.94985 0.98942 1.69870 1.36438 1.22631 1.23730 0.86503 0.78730 0.79823 0.82379 1.20510 1.21183 1.20005 1.48226 1.49207 1.11549 1.23789 1.21550 1.01829 0.83560 0.98850 1.19886 0.79421 0.87425 0.84071 1.90659 1.56636 1.16571 1.75881 1.22143 0.96308 0.95221 0.94828 1.59332 1.31821 1.10300 1.18882 1.22638 0.95478 0.92794 1.00799 1.18754 0.90677 0.92542 0.91333 1.21873 1.01400 0.99095 0.95162 1.21473 0.94622 0.95309 0.96684 1.21203 0.94041 1.00068 0.99136 1.21066 1.02158 0.92974 0.91192 1.21272 0.90752 1.04421 0.94536 1.43457 1.00842 1.00048 1.01455 1.94494 0.95909 1.68508 1.81902 1.94774 1.71978 1.39172 1.24906 0.95202 0.88764 0.97071 0.92712 0.93307 0.90707 0.93454 0.91914 0.88511 0.95628 0.87379 0.91463 0.83911 0.84164 0.83717 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.95 37.16 0.33 -3.10 16 2 C 0.26 6.58 2.63 -69.09 -0.18 6.40 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.52 -14.26 8.37 -34.44 -0.29 -14.55 16 5 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 N -0.59 -12.37 2.75 -175.26 -0.48 -12.86 16 13 C 0.09 1.38 9.48 59.85 0.57 1.95 16 14 C 0.51 10.21 7.37 -10.98 -0.08 10.13 16 15 O -0.52 -12.58 13.66 5.56 0.08 -12.50 16 16 C 0.04 0.65 3.58 -4.97 -0.02 0.63 16 17 N -0.48 -7.15 2.35 -180.32 -0.42 -7.58 16 18 C 0.03 0.39 9.02 60.07 0.54 0.93 16 19 C 0.16 1.97 4.67 -83.79 -0.39 1.58 16 20 C -0.15 -1.28 8.66 -39.38 -0.34 -1.62 16 21 C -0.06 -0.36 10.04 -39.61 -0.40 -0.76 16 22 C -0.13 -0.77 10.04 -39.55 -0.40 -1.16 16 23 C -0.05 -0.50 9.55 -39.61 -0.38 -0.88 16 24 C -0.03 -0.33 6.87 -79.76 -0.55 -0.88 16 25 N 0.02 0.32 4.45 34.06 0.15 0.48 16 26 O -0.21 -3.49 18.45 -29.46 -0.54 -4.04 16 27 O -0.07 -1.44 17.10 -29.46 -0.50 -1.95 16 28 H 0.03 0.64 6.66 -51.93 -0.35 0.29 16 29 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 33 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.57 6.44 -51.93 -0.33 0.23 16 35 H 0.06 0.72 6.74 -51.93 -0.35 0.37 16 36 H 0.10 1.37 8.02 -51.93 -0.42 0.95 16 37 H 0.03 0.27 7.34 -51.93 -0.38 -0.11 16 38 H 0.11 1.79 5.83 -51.93 -0.30 1.49 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.14 0.96 7.14 -52.49 -0.37 0.58 16 41 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 42 H 0.15 0.44 8.06 -52.49 -0.42 0.01 16 43 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -33.89 357.15 -7.97 -41.86 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -5.56 Total: -0.85 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.67 Total: 0.37 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: -0.13 Total: -44.58 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.97 Total: -18.49 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.89 -7.97 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080028084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.589 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds