Wall clock time and date at job start Tue Mar 31 2020 13:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.50696 * 109.47123 * 119.99718 * 2 1 3 5 5 H 1.08006 * 120.00027 * 120.00219 * 4 2 1 6 6 C 1.37882 * 120.00309 * 300.00484 * 4 2 1 7 7 N 1.31513 * 119.99864 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00251 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47356 * 89.99809 * 8 6 4 10 10 H 1.48494 * 109.47067 * 209.99960 * 8 6 4 11 11 H 1.48503 * 109.46948 * 330.00073 * 8 6 4 12 12 N 1.46493 * 109.47298 * 240.00244 * 2 1 3 13 13 C 1.46503 * 119.99941 * 299.99722 * 12 2 1 14 14 C 1.34780 * 120.00159 * 120.00103 * 12 2 1 15 15 O 1.21275 * 120.00081 * 359.97438 * 14 12 2 16 16 C 1.50705 * 119.99773 * 179.97438 * 14 12 2 17 17 N 1.46900 * 109.47071 * 179.97438 * 16 14 12 18 18 C 1.46902 * 111.00009 * 293.95565 * 17 16 14 19 19 C 1.39670 * 111.00170 * 170.00110 * 17 16 14 20 20 C 1.38929 * 120.07513 * 59.99922 * 19 17 16 21 21 C 1.38085 * 119.92665 * 179.97438 * 20 19 17 22 22 C 1.38305 * 120.07270 * 0.02562 * 21 20 19 23 23 C 1.38262 * 120.14957 * 0.02562 * 22 21 20 24 24 C 1.38127 * 120.07682 * 359.96302 * 23 22 21 25 25 N 1.48002 * 120.03558 * 180.02562 * 24 23 22 26 26 O 1.21798 * 120.00377 * 0.02562 * 25 24 23 27 27 O 1.21806 * 119.99522 * 179.97438 * 25 24 23 28 28 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47467 * 299.99834 * 1 2 3 30 30 H 1.09006 * 109.47206 * 60.00073 * 1 2 3 31 31 H 0.96994 * 119.99956 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.46952 * 270.00149 * 13 12 2 33 33 H 1.08998 * 109.46906 * 29.99805 * 13 12 2 34 34 H 1.09001 * 109.47467 * 150.00381 * 13 12 2 35 35 H 1.09005 * 109.47248 * 60.00009 * 16 14 12 36 36 H 1.09000 * 109.47189 * 300.00074 * 16 14 12 37 37 H 1.09000 * 109.46886 * 296.04564 * 18 17 16 38 38 H 1.09006 * 109.47136 * 56.04606 * 18 17 16 39 39 H 1.08995 * 109.47341 * 176.04281 * 18 17 16 40 40 H 1.07998 * 120.03900 * 0.25670 * 20 19 17 41 41 H 1.07995 * 119.96078 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.92277 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.96251 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5458 4.4125 10 1 1.3430 -0.9492 5.1120 11 1 2.4858 -2.5661 3.7120 12 7 2.0183 -0.6905 -1.1961 13 6 1.6645 -2.0931 -1.4280 14 6 2.7932 -0.0355 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2961 -0.7461 -3.3135 17 7 4.1116 0.1774 -4.1134 18 6 3.2926 1.2715 -4.6520 19 6 4.7768 -0.5007 -5.1374 20 6 4.0519 -1.1910 -6.1008 21 6 4.7127 -1.8599 -7.1121 22 6 6.0946 -1.8438 -7.1662 23 6 6.8191 -1.1587 -6.2084 24 6 6.1644 -0.4873 -5.1942 25 7 6.9408 0.2462 -4.1697 26 8 8.1577 0.2584 -4.2208 27 8 6.3628 0.8385 -3.2760 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.7094 1.1618 3.4844 32 1 2.4159 -2.7376 -0.9716 33 1 0.6905 -2.3002 -0.9846 34 1 1.6239 -2.2852 -2.5002 35 1 2.4485 -1.0891 -3.9069 36 1 3.9018 -1.6023 -3.0165 37 1 2.5519 0.8657 -5.3411 38 1 2.7857 1.7828 -3.8336 39 1 3.9323 1.9779 -5.1809 40 1 2.9727 -1.2005 -6.0616 41 1 4.1497 -2.3970 -7.8611 42 1 6.6089 -2.3681 -7.9580 43 1 7.8981 -1.1484 -6.2533 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080028084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:08 Heat of formation + Delta-G solvation = 4.253307 kcal Electronic energy + Delta-G solvation = -27787.756927 eV Core-core repulsion = 23837.025249 eV Total energy + Delta-G solvation = -3950.731678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.06378 -41.37088 -40.32385 -37.94356 -37.30049 -36.75927 -34.80191 -32.95362 -31.91332 -31.10267 -29.05978 -27.56673 -27.53292 -27.25160 -26.08530 -23.70511 -23.05587 -22.18858 -20.15644 -19.89297 -19.39428 -18.53723 -18.34823 -18.32199 -17.29775 -17.17466 -16.78591 -16.46271 -16.18243 -15.90382 -15.63412 -15.21074 -14.85540 -14.45037 -14.14226 -14.01814 -13.83754 -13.45818 -13.35146 -13.10927 -12.95752 -12.91750 -12.86351 -12.66033 -12.59759 -12.50459 -12.44768 -12.14498 -12.09674 -12.06985 -12.05324 -11.16192 -10.65634 -10.55913 -10.46065 -10.14206 -9.50567 -9.26649 -8.13912 -6.30020 -1.15586 -0.08997 0.40658 0.61581 1.39530 1.42600 1.51089 1.83799 2.12215 2.32689 2.41634 2.72147 3.13974 3.46458 3.61493 3.76691 3.89758 3.97075 4.00029 4.07964 4.20334 4.34684 4.40322 4.46463 4.54458 4.69895 4.80377 4.85087 4.90636 5.00067 5.03420 5.04778 5.09361 5.13154 5.31897 5.45839 5.50469 5.56883 5.69015 5.70220 6.05805 6.10142 6.18702 6.64046 6.78372 6.87852 7.35391 7.55080 8.90173 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017966 B = 0.003416 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.105577 B = 8194.237055 C = 8770.914250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.264 3.736 3 H 0.006 0.994 4 C -0.538 4.538 5 H 0.057 0.943 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.286 1.286 10 H -0.278 1.278 11 H -0.261 1.261 12 N -0.604 5.604 13 C 0.082 3.918 14 C 0.494 3.506 15 O -0.575 6.575 16 C 0.063 3.937 17 N -0.514 5.514 18 C 0.037 3.963 19 C 0.142 3.858 20 C -0.149 4.149 21 C -0.036 4.036 22 C -0.107 4.107 23 C -0.058 4.058 24 C -0.057 4.057 25 N 0.027 4.973 26 O -0.199 6.199 27 O -0.168 6.168 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.166 0.834 41 H 0.188 0.812 42 H 0.188 0.812 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -12.241 -26.209 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.185 1.185 12 N -0.336 5.336 13 C -0.060 4.060 14 C 0.282 3.718 15 O -0.455 6.455 16 C -0.066 4.066 17 N -0.235 5.235 18 C -0.108 4.108 19 C 0.046 3.954 20 C -0.169 4.169 21 C -0.054 4.054 22 C -0.125 4.125 23 C -0.077 4.077 24 C -0.142 4.142 25 N 0.540 4.460 26 O -0.408 6.408 27 O -0.383 6.383 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.184 0.816 41 H 0.205 0.795 42 H 0.205 0.795 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.666 -11.648 -26.100 28.815 hybrid contribution 0.165 0.293 1.555 1.591 sum 3.831 -11.355 -24.545 27.315 Atomic orbital electron populations 1.21852 0.96888 1.00154 0.99976 1.18472 0.91677 0.92074 0.81596 0.97566 1.21595 1.31694 1.12980 0.91412 0.92525 1.25709 0.95104 0.95679 1.01944 1.70015 1.37373 1.23859 1.24353 0.85508 0.77746 0.79258 0.78822 1.21198 1.20274 1.18532 1.48219 1.49406 1.13417 1.22534 1.21819 1.01544 0.80395 1.02238 1.20963 0.78349 0.87063 0.85397 1.90640 1.58263 1.19289 1.77302 1.21973 0.97759 0.94239 0.92589 1.58972 1.32431 1.11144 1.21002 1.22454 0.95830 0.92828 0.99727 1.18846 0.90224 0.94170 0.92113 1.22136 1.02382 0.98092 0.94329 1.22055 0.94666 0.92894 0.95787 1.21750 0.94392 0.98021 0.98311 1.21399 1.02913 0.92675 0.90744 1.21625 0.91144 1.06493 0.94895 1.44082 1.00810 0.99383 1.01724 1.94415 0.97189 1.67569 1.81625 1.94790 1.72012 1.43326 1.28158 0.93206 0.91603 0.95857 0.92677 0.93254 0.90852 0.88427 0.87505 0.87761 0.91967 0.91361 0.92001 0.81639 0.79455 0.79472 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.95 71.98 0.64 -5.61 16 2 C 0.26 14.00 2.63 44.24 0.12 14.12 16 3 H 0.01 0.41 6.90 -2.39 -0.02 0.39 16 4 C -0.54 -30.20 8.37 25.60 0.21 -29.99 16 5 H 0.06 3.11 7.65 -2.91 -0.02 3.09 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -54.20 11.32 21.45 0.24 -53.96 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 9 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 12 N -0.60 -25.53 2.75 -826.80 -2.28 -27.81 16 13 C 0.08 2.48 9.48 127.77 1.21 3.69 16 14 C 0.49 20.67 7.37 87.66 0.65 21.32 16 15 O -0.58 -30.25 13.66 -3.01 -0.04 -30.29 16 16 C 0.06 1.78 3.58 85.56 0.31 2.09 16 17 N -0.51 -15.33 2.35 -724.42 -1.70 -17.03 16 18 C 0.04 1.03 9.02 127.69 1.15 2.18 16 19 C 0.14 3.17 4.67 38.21 0.18 3.35 16 20 C -0.15 -1.69 8.66 22.40 0.19 -1.49 16 21 C -0.04 -0.16 10.04 22.25 0.22 0.06 16 22 C -0.11 -0.64 10.04 22.29 0.22 -0.41 16 23 C -0.06 -0.88 9.55 22.25 0.21 -0.66 16 24 C -0.06 -1.42 6.87 36.51 0.25 -1.17 16 25 N 0.03 0.97 4.45 -46.17 -0.21 0.76 16 26 O -0.20 -6.94 18.45 18.89 0.35 -6.60 16 27 O -0.17 -7.31 17.10 18.88 0.32 -6.99 16 28 H 0.05 2.14 6.66 -2.39 -0.02 2.12 16 29 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 30 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.07 2.22 6.43 -2.39 -0.02 2.21 16 34 H 0.10 1.93 6.44 -2.39 -0.02 1.91 16 35 H 0.11 2.01 6.74 -2.38 -0.02 1.99 16 36 H 0.10 2.79 8.02 -2.39 -0.02 2.77 16 37 H 0.06 1.20 7.34 -2.39 -0.02 1.18 16 38 H 0.07 2.45 5.83 -2.38 -0.01 2.44 16 39 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.17 1.13 7.14 -2.91 -0.02 1.11 16 41 H 0.19 -0.71 8.06 -2.91 -0.02 -0.73 16 42 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 43 H 0.16 2.13 7.61 -2.91 -0.02 2.11 16 Total: -1.00 -85.60 357.15 5.78 -79.82 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.04 Total: 6.76 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.02 Total: 8.77 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.94 Total: -98.04 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: 0.63 Total: -43.87 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -85.60 5.78 -79.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080028084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.074 kcal (2) G-P(sol) polarization free energy of solvation -85.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds