Wall clock time and date at job start Tue Mar 31 2020 13:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34649 * 117.00475 * 2 1 4 4 O 1.21522 * 119.99797 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00357 * 179.97438 * 3 2 1 6 6 C 1.40132 * 119.99854 * 175.38570 * 5 3 2 7 7 C 1.38856 * 119.99799 * 215.09308 * 6 5 3 8 8 C 1.38063 * 120.00179 * 180.02562 * 7 6 5 9 9 C 1.38856 * 119.99894 * 359.97438 * 8 7 6 10 10 N 1.40122 * 120.00112 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99948 * 35.09897 * 10 9 8 12 12 O 1.21590 * 119.99866 * 355.40935 * 11 10 9 13 13 N 1.34775 * 119.99903 * 175.41447 * 11 10 9 14 14 C 1.46494 * 120.00240 * 359.97438 * 13 11 10 15 15 C 1.46508 * 119.99692 * 179.97438 * 13 11 10 16 16 H 1.08991 * 109.47120 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.47084 * 239.99517 * 15 13 11 18 18 C 1.50705 * 109.46535 * 120.00045 * 15 13 11 19 19 H 1.07995 * 120.00390 * 359.97438 * 18 15 13 20 20 C 1.37878 * 119.99335 * 179.97438 * 18 15 13 21 21 N 1.31518 * 120.00310 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 119.99654 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47057 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47491 * 300.00024 * 22 20 18 25 25 H 1.48497 * 109.47269 * 60.00326 * 22 20 18 26 26 C 1.38854 * 119.99697 * 0.27700 * 9 8 7 27 27 C 1.38065 * 120.00100 * 359.44851 * 26 9 8 28 28 H 1.09001 * 109.47767 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47324 * 299.99788 * 1 2 3 30 30 H 1.09003 * 109.47125 * 59.99697 * 1 2 3 31 31 H 0.97001 * 119.99982 * 355.38587 * 5 3 2 32 32 H 1.08001 * 119.99924 * 0.02562 * 7 6 5 33 33 H 1.07994 * 120.00401 * 179.97438 * 8 7 6 34 34 H 0.96998 * 120.00170 * 215.09370 * 10 9 8 35 35 H 1.09001 * 109.47296 * 270.00394 * 14 13 11 36 36 H 1.09008 * 109.47243 * 30.00259 * 14 13 11 37 37 H 1.08999 * 109.47288 * 149.99895 * 14 13 11 38 38 H 1.08997 * 109.47092 * 179.97438 * 17 15 13 39 39 H 1.08994 * 109.47503 * 300.00823 * 17 15 13 40 40 H 1.09005 * 109.46661 * 60.00593 * 17 15 13 41 41 H 0.97000 * 119.99645 * 180.02562 * 21 20 18 42 42 H 1.08003 * 120.00160 * 179.70112 * 26 9 8 43 43 H 1.07994 * 119.99718 * 180.25330 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.1997 0.0000 4 8 1.4016 2.2189 0.0005 5 7 3.4093 1.2702 0.0005 6 6 4.0457 2.5148 -0.0971 7 6 5.2408 2.6307 -0.7946 8 6 5.8682 3.8568 -0.8904 9 6 5.3038 4.9742 -0.2897 10 7 5.9402 6.2188 -0.3873 11 6 6.6037 6.5499 -1.5128 12 8 6.7213 5.7381 -2.4103 13 7 7.1368 7.7808 -1.6433 14 6 6.9947 8.7591 -0.5621 15 6 7.8585 8.1406 -2.8665 16 1 7.8599 7.2919 -3.5503 17 6 9.2997 8.5167 -2.5164 18 6 7.1787 9.3139 -3.5240 19 1 6.2972 9.7479 -3.0759 20 6 7.6824 9.8332 -4.6977 21 7 8.7557 9.3044 -5.2437 22 14 6.8395 11.2871 -5.5132 23 1 7.5711 11.6518 -6.7530 24 1 5.4410 10.9215 -5.8537 25 1 6.8359 12.4436 -4.5817 26 6 4.1114 4.8573 0.4122 27 6 3.4811 3.6323 0.5032 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9374 0.4594 0.0685 32 1 5.6796 1.7616 -1.2621 33 1 6.7978 3.9468 -1.4324 34 1 5.9031 6.8420 0.3550 35 1 6.0828 9.3370 -0.7125 36 1 6.9414 8.2386 0.3942 37 1 7.8541 9.4295 -0.5634 38 1 9.8367 8.7838 -3.4265 39 1 9.2978 9.3654 -1.8326 40 1 9.7913 7.6680 -2.0408 41 1 9.1102 9.6701 -6.0692 42 1 3.6748 5.7255 0.8835 43 1 2.5516 3.5423 1.0456 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120120596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:42 Heat of formation + Delta-G solvation = -57.761551 kcal Electronic energy + Delta-G solvation = -26498.764244 eV Core-core repulsion = 22545.343400 eV Total energy + Delta-G solvation = -3953.420844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.06832 -40.16854 -38.75095 -36.91044 -35.71384 -35.03994 -33.78218 -32.62843 -30.85786 -29.65288 -28.56842 -27.32254 -26.16728 -25.20392 -23.52312 -22.72913 -21.73705 -20.77269 -19.41232 -18.89134 -17.90536 -17.70957 -17.01185 -16.79272 -16.39871 -16.13165 -15.18688 -15.08476 -14.55744 -14.36394 -14.23227 -13.99594 -13.78527 -13.30269 -13.27338 -12.87023 -12.70630 -12.61505 -12.44972 -12.41913 -11.59744 -11.54821 -11.28855 -11.14363 -11.06897 -10.88449 -10.81551 -10.70984 -10.64526 -10.26144 -10.15656 -9.57140 -9.25137 -9.15515 -8.80580 -8.42450 -7.80695 -7.44772 -6.06828 -4.14494 1.26112 1.52738 1.86654 2.54441 3.18098 3.28886 3.34029 3.37364 3.66539 3.91151 4.06276 4.36106 4.52524 4.80355 4.88941 4.92947 5.09582 5.16562 5.24288 5.41735 5.43525 5.54440 5.58016 5.83077 5.90247 5.97964 6.15910 6.22350 6.36506 6.46917 6.49830 6.72262 6.74229 6.79498 7.00099 7.10291 7.14970 7.23969 7.45438 7.69245 7.81630 8.00525 8.05658 8.21086 8.62092 8.86094 9.19367 9.52306 10.98468 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022091 B = 0.002432 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.177001 B =11511.352511 C =11897.557679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.371 6.371 3 C 0.645 3.355 4 O -0.554 6.554 5 N -0.646 5.646 6 C 0.119 3.881 7 C -0.116 4.116 8 C -0.103 4.103 9 C 0.173 3.827 10 N -0.696 5.696 11 C 0.697 3.303 12 O -0.579 6.579 13 N -0.604 5.604 14 C 0.087 3.913 15 C 0.272 3.728 16 H 0.066 0.934 17 C -0.148 4.148 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.286 1.286 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.138 4.138 27 C -0.097 4.097 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.415 0.585 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.403 0.597 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.030 0.970 40 H 0.012 0.988 41 H 0.264 0.736 42 H 0.128 0.872 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 -14.882 15.085 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.285 6.285 3 C 0.399 3.601 4 O -0.442 6.442 5 N -0.297 5.297 6 C 0.026 3.974 7 C -0.137 4.137 8 C -0.124 4.124 9 C 0.076 3.924 10 N -0.345 5.345 11 C 0.399 3.601 12 O -0.456 6.456 13 N -0.338 5.338 14 C -0.057 4.057 15 C 0.172 3.828 16 H 0.083 0.917 17 C -0.206 4.206 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.160 4.160 27 C -0.118 4.118 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.252 0.748 32 H 0.146 0.854 33 H 0.168 0.832 34 H 0.240 0.760 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.049 0.951 40 H 0.031 0.969 41 H 0.074 0.926 42 H 0.145 0.855 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.860 -14.900 14.180 22.810 hybrid contribution -0.472 0.914 -0.097 1.033 sum -10.332 -13.986 14.083 22.376 Atomic orbital electron populations 1.23239 0.73963 1.03616 1.03003 1.86233 1.24530 1.30789 1.86977 1.18131 0.83243 0.82375 0.76396 1.91021 1.64419 1.34492 1.54237 1.41886 1.03192 1.09298 1.75340 1.17401 0.94710 0.84064 1.01238 1.20747 0.95583 0.98367 0.99034 1.21227 1.01495 0.89741 0.99952 1.17642 0.91605 0.84848 0.98272 1.43004 1.56291 1.17188 1.18019 1.15986 0.78936 0.83543 0.81670 1.90859 1.64357 1.49772 1.40661 1.47613 1.56307 1.09662 1.20225 1.21508 1.02791 0.93190 0.88227 1.18904 0.87512 0.97001 0.79377 0.91659 1.22117 0.98935 0.97414 1.02152 1.21288 1.12207 1.14966 1.07973 0.92365 1.24883 0.95004 0.97211 0.96693 1.69867 1.21868 1.41169 1.19731 0.86543 0.79641 0.82401 0.78713 1.21174 1.20265 1.20263 1.20761 0.93608 0.98006 1.03602 1.20949 1.00375 0.91130 0.99301 0.87819 0.91679 0.91601 0.74847 0.85384 0.83240 0.76046 0.93188 0.93665 0.90369 0.88673 0.95113 0.96909 0.92620 0.85456 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.56 101.05 1.07 1.44 16 2 O -0.37 -3.54 10.62 -40.35 -0.43 -3.96 16 3 C 0.65 7.65 8.59 54.06 0.46 8.11 16 4 O -0.55 -8.20 13.56 -19.29 -0.26 -8.46 16 5 N -0.65 -6.68 5.35 -14.23 -0.08 -6.76 16 6 C 0.12 1.50 6.30 -83.61 -0.53 0.97 16 7 C -0.12 -1.50 9.96 -39.42 -0.39 -1.89 16 8 C -0.10 -1.62 8.69 -39.42 -0.34 -1.96 16 9 C 0.17 2.68 6.30 -83.61 -0.53 2.16 16 10 N -0.70 -11.16 5.22 -14.18 -0.07 -11.23 16 11 C 0.70 14.57 8.13 -86.92 -0.71 13.86 16 12 O -0.58 -14.21 13.10 5.29 0.07 -14.14 16 13 N -0.60 -12.74 2.75 -181.00 -0.50 -13.24 16 14 C 0.09 1.41 9.48 59.84 0.57 1.97 16 15 C 0.27 6.90 2.64 -69.08 -0.18 6.72 16 16 H 0.07 1.92 6.90 -51.93 -0.36 1.57 16 17 C -0.15 -3.47 8.95 37.16 0.33 -3.14 16 18 C -0.53 -14.18 8.37 -34.44 -0.29 -14.47 16 19 H 0.06 1.55 7.65 -52.49 -0.40 1.15 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.14 -1.85 9.96 -39.42 -0.39 -2.25 16 27 C -0.10 -1.30 8.69 -39.42 -0.34 -1.64 16 28 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.42 2.93 8.93 -40.82 -0.36 2.57 16 32 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.15 2.65 6.22 -52.49 -0.33 2.33 16 34 H 0.40 5.12 6.52 -40.82 -0.27 4.85 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.55 6.30 -51.92 -0.33 0.22 16 37 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 38 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 39 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 40 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.14 1.87 6.22 -52.49 -0.33 1.55 16 LS Contribution 357.72 15.07 5.39 5.39 Total: -1.00 -33.96 357.72 -7.09 -41.06 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -5.46 Total: 8.09 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: -1.36 Total: 11.55 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.02 Total: -55.64 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.62 Total: -26.57 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.96 -7.09 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120120596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.704 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds