Wall clock time and date at job start Tue Mar 31 2020 12:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.43207 * 2 1 4 4 C 1.54261 * 110.48409 * 237.31943 * 2 1 3 5 5 C 1.53875 * 106.59807 * 217.71049 * 4 2 1 6 6 C 1.54260 * 106.59970 * 0.02562 * 5 4 2 7 7 H 1.09008 * 110.48412 * 264.93333 * 6 5 4 8 8 C 1.53003 * 110.48994 * 142.29094 * 6 5 4 9 9 C 1.50694 * 109.47188 * 70.21963 * 8 6 5 10 10 O 1.21306 * 120.00161 * 0.02562 * 9 8 6 11 11 N 1.34777 * 120.00278 * 180.02562 * 9 8 6 12 12 C 1.40085 * 120.00278 * 174.44512 * 11 9 8 13 13 C 1.38710 * 120.07603 * 335.19597 * 12 11 9 14 14 C 1.38184 * 120.01778 * 179.74314 * 13 12 11 15 15 C 1.38555 * 120.17866 * 0.51340 * 14 13 12 16 16 F 1.35105 * 119.92318 * 179.74029 * 15 14 13 17 17 C 1.38342 * 120.15407 * 359.76422 * 15 14 13 18 18 C 1.38746 * 119.97508 * 359.97438 * 17 15 14 19 19 O 1.35774 * 120.08502 * 180.02562 * 18 17 15 20 20 C 1.34805 * 117.00197 * 5.16061 * 19 18 17 21 21 H 1.07997 * 119.99911 * 354.98935 * 20 19 18 22 22 C 1.38638 * 119.99742 * 174.98381 * 20 19 18 23 23 N 1.31569 * 120.00336 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99550 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47390 * 59.99924 * 24 22 20 26 26 H 1.48506 * 109.46965 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47247 * 299.99641 * 24 22 20 28 28 C 1.54890 * 104.19789 * 23.60943 * 6 5 4 29 29 H 1.09005 * 109.46634 * 297.45443 * 1 2 3 30 30 H 1.08989 * 109.47328 * 57.45442 * 1 2 3 31 31 H 1.09004 * 109.46915 * 177.45966 * 1 2 3 32 32 H 1.09001 * 110.03751 * 336.99445 * 4 2 1 33 33 H 1.09000 * 110.03742 * 98.42542 * 4 2 1 34 34 H 1.09001 * 110.03232 * 240.71231 * 5 4 2 35 35 H 1.09001 * 110.03316 * 119.28789 * 5 4 2 36 36 H 1.08998 * 109.46776 * 190.22600 * 8 6 5 37 37 H 1.09000 * 109.46724 * 310.22227 * 8 6 5 38 38 H 0.97003 * 119.99403 * 354.44985 * 11 9 8 39 39 H 1.07996 * 119.98753 * 359.97438 * 13 12 11 40 40 H 1.08006 * 119.91254 * 180.25417 * 14 13 12 41 41 H 1.08000 * 120.01435 * 179.97438 * 17 15 14 42 42 H 0.96994 * 120.00129 * 179.97438 * 23 22 20 43 43 H 1.08996 * 110.75268 * 80.37358 * 28 6 5 44 44 H 1.08993 * 110.75680 * 203.75105 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0698 -0.7803 -1.2163 5 6 3.3165 -1.5414 -0.7322 6 6 3.4903 -1.1976 0.7615 7 1 4.1893 -0.3700 0.8836 8 6 3.9689 -2.4239 1.5412 9 6 5.3942 -2.7347 1.1633 10 8 5.9709 -2.0429 0.3506 11 7 6.0284 -3.7812 1.7282 12 6 7.3106 -4.1410 1.2936 13 6 7.7279 -3.8122 0.0122 14 6 8.9949 -4.1631 -0.4135 15 6 9.8479 -4.8528 0.4329 16 9 11.0836 -5.1979 0.0095 17 6 9.4371 -5.1895 1.7103 18 6 8.1683 -4.8356 2.1462 19 8 7.7630 -5.1644 3.3996 20 6 8.6765 -5.7394 4.2072 21 1 9.6536 -5.9927 3.8230 22 6 8.3618 -6.0054 5.5309 23 7 7.1717 -5.6962 5.9991 24 14 9.6279 -6.8014 6.6501 25 1 10.8296 -5.9330 6.7346 26 1 9.0488 -6.9775 8.0062 27 1 10.0121 -8.1260 6.0996 28 6 2.0716 -0.7814 1.2231 29 1 -0.3633 0.4738 0.9120 30 1 -0.3633 0.5528 -0.8662 31 1 -0.3633 -1.0267 -0.0456 32 1 1.3176 -1.4841 -1.5723 33 1 2.3411 -0.0882 -2.0135 34 1 4.1927 -1.2186 -1.2945 35 1 3.1692 -2.6146 -0.8533 36 1 3.9127 -2.2194 2.6103 37 1 3.3350 -3.2774 1.3007 38 1 5.5969 -4.2852 2.4358 39 1 7.0639 -3.2786 -0.6515 40 1 9.3196 -3.9026 -1.4101 41 1 10.1037 -5.7275 2.3679 42 1 6.9514 -5.8827 6.9251 43 1 1.4577 -1.6594 1.4239 44 1 2.1245 -0.1368 2.1004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120167184.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:44 Heat of formation + Delta-G solvation = -121.328030 kcal Electronic energy + Delta-G solvation = -26659.407719 eV Core-core repulsion = 22683.310464 eV Total energy + Delta-G solvation = -3976.097255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.84030 -41.72393 -40.43853 -39.15793 -37.94199 -35.55447 -34.31512 -33.59835 -31.18874 -30.72412 -29.88280 -27.96548 -27.35684 -25.17552 -24.08423 -23.22142 -21.59731 -20.95715 -20.35103 -20.15881 -19.49669 -18.21929 -18.13206 -17.07131 -17.01054 -16.85121 -16.53327 -16.10338 -15.93773 -15.57805 -15.44254 -15.23095 -15.08057 -14.91465 -14.26386 -14.09868 -14.00752 -13.87359 -13.72568 -13.46930 -13.20912 -12.95961 -12.70820 -12.59670 -12.35631 -12.16734 -11.91939 -11.71223 -11.67643 -11.56722 -11.46182 -11.41027 -11.29373 -11.15444 -10.84008 -10.63281 -9.57265 -8.71841 -8.51821 -6.17558 0.16550 0.43955 1.36701 1.44936 1.50323 1.63190 2.10461 2.17486 2.67276 3.01389 3.18282 3.44119 3.57649 3.68578 3.79428 3.90213 4.01840 4.15818 4.27936 4.32995 4.37969 4.51768 4.58036 4.67486 4.73282 4.77295 4.79021 4.87304 4.90894 4.94075 5.00055 5.06527 5.17421 5.20741 5.21129 5.27442 5.29938 5.33968 5.40301 5.46343 5.53858 5.57484 5.64729 5.92280 6.02893 6.51489 6.92743 7.16075 7.60618 8.68580 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003208 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.079108 B = 8727.108182 C =10733.719360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.069 0.931 4 C -0.118 4.118 5 C -0.115 4.115 6 C -0.074 4.074 7 H 0.063 0.937 8 C -0.126 4.126 9 C 0.507 3.493 10 O -0.555 6.555 11 N -0.655 5.655 12 C 0.067 3.933 13 C -0.064 4.064 14 C -0.202 4.202 15 C 0.117 3.883 16 F -0.145 7.145 17 C -0.264 4.264 18 C 0.126 3.874 19 O -0.202 6.202 20 C -0.418 4.418 21 H 0.098 0.902 22 C -0.007 4.007 23 N -0.904 5.904 24 Si 1.010 2.990 25 H -0.263 1.263 26 H -0.269 1.269 27 H -0.259 1.259 28 C -0.111 4.111 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.418 0.582 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.136 0.864 42 H 0.275 0.725 43 H 0.080 0.920 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.890 6.807 -9.469 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.093 4.093 7 H 0.082 0.918 8 C -0.165 4.165 9 C 0.297 3.703 10 O -0.434 6.434 11 N -0.299 5.299 12 C -0.029 4.029 13 C -0.084 4.084 14 C -0.222 4.222 15 C 0.097 3.903 16 F -0.124 7.124 17 C -0.284 4.284 18 C 0.073 3.927 19 O -0.108 6.108 20 C -0.493 4.493 21 H 0.115 0.885 22 C -0.207 4.207 23 N -0.540 5.540 24 Si 0.830 3.170 25 H -0.188 1.188 26 H -0.193 1.193 27 H -0.184 1.184 28 C -0.149 4.149 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.136 0.864 38 H 0.254 0.746 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.153 0.847 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.858 7.303 -9.733 16.308 hybrid contribution 1.061 -0.815 0.982 1.660 sum -9.796 6.487 -8.751 14.651 Atomic orbital electron populations 1.21782 0.93997 1.02103 1.01944 1.21956 0.96186 0.98941 0.94500 0.91218 1.22218 0.96756 0.98834 0.97709 1.22139 0.97814 1.00021 0.95330 1.21704 0.97215 0.95652 0.94719 0.91832 1.21830 0.90056 1.01277 1.03368 1.21536 0.90078 0.78190 0.80452 1.90594 1.68363 1.49300 1.35141 1.43465 1.14822 1.32021 1.39580 1.17247 0.87244 1.04869 0.93516 1.20986 0.96312 0.98380 0.92761 1.20897 0.94378 1.05425 1.01510 1.17465 0.80541 0.99262 0.92990 1.91425 1.40253 1.90548 1.90186 1.20933 0.98521 1.11649 0.97332 1.19099 0.91881 0.95296 0.86430 1.83869 1.38769 1.69826 1.18324 1.21688 0.95952 1.39948 0.91754 0.88468 1.26356 0.99632 0.97457 0.97273 1.70099 1.21478 1.45700 1.16739 0.84759 0.76818 0.78755 0.76678 1.18786 1.19346 1.18371 1.22640 0.94082 1.00402 0.97761 0.92281 0.92402 0.92317 0.91066 0.92146 0.93187 0.92198 0.87387 0.86409 0.74550 0.82352 0.82602 0.84668 0.91545 0.90129 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.14 71.98 0.66 -1.08 16 2 C -0.10 -1.49 3.46 -9.71 -0.03 -1.53 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.12 -1.98 6.37 31.32 0.20 -1.78 16 5 C -0.12 -2.45 5.57 31.32 0.17 -2.27 16 6 C -0.07 -1.57 2.45 -9.72 -0.02 -1.59 16 7 H 0.06 1.61 7.90 -2.38 -0.02 1.59 16 8 C -0.13 -2.81 5.10 29.85 0.15 -2.66 16 9 C 0.51 16.07 7.45 87.66 0.65 16.72 16 10 O -0.56 -20.08 12.18 -3.11 -0.04 -20.12 16 11 N -0.66 -23.65 5.29 -303.03 -1.60 -25.26 16 12 C 0.07 2.75 6.45 38.23 0.25 3.00 16 13 C -0.06 -2.38 8.72 22.37 0.19 -2.19 16 14 C -0.20 -7.12 10.02 22.33 0.22 -6.90 16 15 C 0.12 4.59 7.29 22.37 0.16 4.76 16 16 F -0.15 -5.38 17.26 44.97 0.78 -4.60 16 17 C -0.26 -11.68 9.14 22.42 0.20 -11.47 16 18 C 0.13 5.95 6.67 22.69 0.15 6.10 16 19 O -0.20 -10.91 9.17 -22.75 -0.21 -11.11 16 20 C -0.42 -22.66 9.49 67.92 0.64 -22.02 16 21 H 0.10 4.97 5.20 -2.91 -0.02 4.95 16 22 C -0.01 -0.38 5.49 84.83 0.47 0.08 16 23 N -0.90 -50.36 13.67 21.61 0.30 -50.06 16 24 Si 1.01 40.56 29.55 68.60 2.03 42.59 16 25 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 26 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 27 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 28 C -0.11 -1.81 5.75 31.90 0.18 -1.62 16 29 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.69 8.08 -2.38 -0.02 0.67 16 32 H 0.07 1.07 7.79 -2.39 -0.02 1.05 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.27 7.77 -2.39 -0.02 1.25 16 35 H 0.06 1.25 7.71 -2.39 -0.02 1.23 16 36 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.12 2.12 7.95 -2.39 -0.02 2.10 16 38 H 0.42 14.83 8.34 -92.71 -0.77 14.05 16 39 H 0.16 5.60 5.79 -2.91 -0.02 5.58 16 40 H 0.16 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.14 6.07 5.63 -2.91 -0.02 6.06 16 42 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 43 H 0.08 1.16 7.97 -2.39 -0.02 1.14 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -62.98 362.36 5.76 -57.22 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: 0.26 Total: 35.79 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.26 Total: -24.45 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -1.31 Total: -75.32 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.25 Total: -31.23 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.78 Total: -4.60 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -62.98 5.76 -57.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120167184.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.112 kcal (2) G-P(sol) polarization free energy of solvation -62.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds