Wall clock time and date at job start Tue Mar 31 2020 13:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35974 * 117.00072 * 2 1 4 4 C 1.38487 * 120.04746 * 0.25168 * 3 2 1 5 5 C 1.38808 * 119.94819 * 180.29575 * 4 3 2 6 6 N 1.40101 * 119.98148 * 179.72631 * 5 4 3 7 7 C 1.34773 * 119.99805 * 214.84914 * 6 5 4 8 8 O 1.21586 * 120.00396 * 355.45907 * 7 6 5 9 9 N 1.34781 * 119.99824 * 175.46541 * 7 6 5 10 10 C 1.46498 * 120.00046 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.46981 * 324.99435 * 10 9 7 12 12 C 1.52999 * 109.47044 * 84.99816 * 10 9 7 13 13 C 1.50698 * 109.47114 * 204.99675 * 10 9 7 14 14 H 1.08004 * 120.00105 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99941 * 180.27571 * 13 10 9 16 16 N 1.31510 * 119.99931 * 359.72372 * 15 13 10 17 17 Si 1.86805 * 119.99953 * 179.72581 * 15 13 10 18 18 H 1.48499 * 109.46901 * 89.99855 * 17 15 13 19 19 H 1.48501 * 109.46881 * 209.99744 * 17 15 13 20 20 H 1.48502 * 109.46940 * 329.99875 * 17 15 13 21 21 C 1.38865 * 120.03939 * 359.44871 * 5 4 3 22 22 C 1.38137 * 120.09182 * 0.27537 * 21 5 4 23 23 C 1.38712 * 120.05482 * 359.97438 * 22 21 5 24 24 N 1.40291 * 120.02113 * 179.97438 * 23 22 21 25 25 C 1.34776 * 119.99866 * 34.71013 * 24 23 22 26 26 C 1.50698 * 119.99626 * 175.45112 * 25 24 23 27 27 O 1.21300 * 120.00069 * 355.45202 * 25 24 23 28 28 H 1.08992 * 109.47408 * 300.00662 * 1 2 3 29 29 H 1.09009 * 109.46962 * 60.00124 * 1 2 3 30 30 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08004 * 120.02283 * 0.04147 * 4 3 2 32 32 H 0.97000 * 119.99755 * 34.84427 * 6 5 4 33 33 H 0.97005 * 119.99493 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47543 * 59.99963 * 12 10 9 35 35 H 1.09001 * 109.47355 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.46901 * 299.99889 * 12 10 9 37 37 H 0.97006 * 119.99887 * 180.02562 * 16 15 13 38 38 H 1.08003 * 119.95635 * 180.30154 * 21 5 4 39 39 H 1.08003 * 119.97256 * 180.02562 * 22 21 5 40 40 H 0.96998 * 119.99672 * 214.70940 * 24 23 22 41 41 H 1.08993 * 109.47545 * 0.02562 * 26 25 24 42 42 H 1.09004 * 109.47073 * 120.00156 * 26 25 24 43 43 H 1.09001 * 109.47116 * 239.99465 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2931 2.3736 0.0053 5 6 1.9254 3.6093 -0.0010 6 7 1.1640 4.7853 -0.0014 7 6 1.5992 5.8695 -0.6734 8 8 2.6901 5.8548 -1.2100 9 7 0.8251 6.9702 -0.7503 10 6 1.2983 8.1490 -1.4803 11 1 2.3766 8.2459 -1.3537 12 6 0.9710 7.9937 -2.9667 13 6 0.6167 9.3804 -0.9418 14 1 -0.0974 9.2937 -0.1361 15 6 0.9007 10.6171 -1.4811 16 7 1.7705 10.7227 -2.4618 17 14 0.0500 12.1426 -0.8188 18 1 0.8552 12.7167 0.2890 19 1 -0.0835 13.1460 -1.9054 20 1 -1.2980 11.7777 -0.3136 21 6 3.3122 3.6806 -0.0009 22 6 4.0652 2.5225 -0.0004 23 6 3.4374 1.2856 0.0006 24 7 4.2028 0.1099 0.0006 25 6 5.3750 0.0690 0.6644 26 6 6.1473 -1.2222 0.7507 27 8 5.8083 1.0714 1.1924 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2145 2.3184 0.0101 32 1 0.3236 4.8192 0.4818 33 1 -0.0454 6.9818 -0.3224 34 1 -0.1072 7.8967 -3.0933 35 1 1.3235 8.8705 -3.5099 36 1 1.4641 7.1030 -3.3562 37 1 1.9706 11.5928 -2.8410 38 1 3.8028 4.6427 -0.0008 39 1 5.1437 2.5801 0.0001 40 1 3.8883 -0.6735 -0.4772 41 1 5.6059 -2.0056 0.2206 42 1 7.1295 -1.0891 0.2969 43 1 6.2658 -1.5055 1.7965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156095895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:00 Heat of formation + Delta-G solvation = -68.468125 kcal Electronic energy + Delta-G solvation = -26535.293716 eV Core-core repulsion = 22581.408600 eV Total energy + Delta-G solvation = -3953.885116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91735 -39.79351 -39.21546 -37.27735 -35.44205 -34.63004 -33.58128 -32.34297 -30.64095 -30.11065 -29.02494 -28.17380 -26.75150 -25.25645 -23.03642 -22.72760 -21.17574 -20.55688 -19.84566 -18.55706 -18.32508 -17.51100 -17.01691 -16.51491 -15.96162 -15.81043 -15.53578 -15.23888 -14.96450 -14.69461 -14.40497 -14.15809 -13.76765 -13.63054 -13.18437 -13.07567 -12.90763 -12.68854 -12.39860 -12.32609 -11.84269 -11.80532 -11.62452 -11.26982 -11.08315 -10.99489 -10.80855 -10.60872 -10.31584 -10.23962 -10.00190 -9.48297 -9.21608 -9.05989 -8.56828 -8.48574 -7.99386 -7.42590 -6.13367 -4.22673 1.28166 1.48951 2.46634 2.92276 3.04993 3.21828 3.24440 3.31283 3.33439 3.66418 4.02311 4.31483 4.55665 4.78060 4.84258 4.86030 4.93693 4.95292 5.10290 5.19023 5.20024 5.27155 5.37631 5.43790 5.64566 5.72599 5.84638 6.15957 6.46610 6.62884 6.69548 6.80729 6.96158 6.97756 7.11870 7.22952 7.25883 7.36059 7.45141 7.61216 7.82345 7.98555 8.01649 8.14492 8.71431 8.83480 9.22396 9.45685 10.92666 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022164 B = 0.002512 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.999855 B =11142.865760 C =11933.930294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.228 4.228 5 C 0.208 3.792 6 N -0.696 5.696 7 C 0.692 3.308 8 O -0.578 6.578 9 N -0.718 5.718 10 C 0.280 3.720 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.534 4.534 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.882 5.882 17 Si 0.903 3.097 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.136 4.136 22 C -0.063 4.063 23 C 0.083 3.917 24 N -0.660 5.660 25 C 0.506 3.494 26 C -0.168 4.168 27 O -0.531 6.531 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.402 0.598 33 H 0.386 0.614 34 H 0.025 0.975 35 H 0.091 0.909 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.437 -25.122 5.228 25.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.073 3.927 4 C -0.250 4.250 5 C 0.111 3.889 6 N -0.343 5.343 7 C 0.393 3.607 8 O -0.455 6.455 9 N -0.370 5.370 10 C 0.178 3.822 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.158 4.158 22 C -0.084 4.084 23 C -0.011 4.011 24 N -0.306 5.306 25 C 0.294 3.706 26 C -0.227 4.227 27 O -0.407 6.407 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.237 0.763 33 H 0.218 0.782 34 H 0.045 0.955 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.168 0.832 39 H 0.164 0.836 40 H 0.246 0.754 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.048 -24.360 4.948 24.857 hybrid contribution -1.907 0.603 0.452 2.050 sum -1.858 -23.757 5.400 24.433 Atomic orbital electron populations 1.23025 0.78311 1.03661 1.01582 1.85979 1.21448 1.26510 1.89401 1.18311 0.90085 0.84228 1.00111 1.20640 0.99752 0.90542 1.14072 1.17281 0.90668 0.84447 0.96521 1.42876 1.25572 1.11087 1.54805 1.16155 0.84894 0.80158 0.79514 1.90883 1.20864 1.82047 1.51734 1.45875 1.19984 1.14014 1.57079 1.18692 0.96541 0.79199 0.87726 0.93198 1.22106 0.98306 1.00765 0.99513 1.21198 1.25818 0.91078 1.19166 0.92082 1.24883 0.95057 0.99008 0.94767 1.69903 1.32840 1.24628 1.24609 0.86429 0.79707 0.82272 0.78555 1.20532 1.21059 1.19896 1.21313 0.92066 0.99871 1.02510 1.21051 1.01194 0.89262 0.96895 1.16971 0.86518 0.87050 1.10564 1.43405 1.21184 1.14016 1.52036 1.20954 0.80925 0.91284 0.77408 1.21827 1.01315 0.94439 1.05138 1.90745 1.67791 1.36245 1.45939 0.92635 0.92545 0.88417 0.84970 0.76331 0.78185 0.95548 0.89057 0.96560 0.92521 0.83227 0.83552 0.75379 0.90472 0.88530 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.24 10.05 -19.66 -0.20 -3.44 16 3 C 0.12 1.50 6.70 -39.10 -0.26 1.24 16 4 C -0.23 -2.89 8.95 -39.28 -0.35 -3.25 16 5 C 0.21 3.25 6.30 -83.63 -0.53 2.72 16 6 N -0.70 -10.80 5.35 -14.20 -0.08 -10.88 16 7 C 0.69 14.09 8.37 -86.92 -0.73 13.36 16 8 O -0.58 -14.02 13.44 5.29 0.07 -13.94 16 9 N -0.72 -14.85 5.07 -59.82 -0.30 -15.16 16 10 C 0.28 7.12 2.56 -69.09 -0.18 6.94 16 11 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 12 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 13 C -0.53 -14.06 8.73 -34.44 -0.30 -14.36 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.88 -24.83 11.31 55.43 0.63 -24.20 16 17 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 21 C -0.14 -2.35 8.69 -39.39 -0.34 -2.70 16 22 C -0.06 -1.00 8.70 -39.44 -0.34 -1.34 16 23 C 0.08 1.13 6.33 -83.41 -0.53 0.61 16 24 N -0.66 -6.92 5.19 -9.71 -0.05 -6.97 16 25 C 0.51 5.51 7.79 -10.99 -0.09 5.43 16 26 C -0.17 -0.97 10.39 36.00 0.37 -0.60 16 27 O -0.53 -8.18 14.52 5.54 0.08 -8.10 16 28 H 0.06 0.34 7.65 -51.93 -0.40 -0.05 16 29 H 0.06 0.37 7.67 -51.92 -0.40 -0.03 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.13 1.32 6.29 -52.48 -0.33 0.99 16 32 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 33 H 0.39 6.75 8.56 -40.82 -0.35 6.40 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.15 2.95 6.22 -52.48 -0.33 2.62 16 39 H 0.15 2.39 6.19 -52.48 -0.32 2.06 16 40 H 0.41 3.06 8.40 -40.82 -0.34 2.72 16 41 H 0.08 0.25 7.92 -51.93 -0.41 -0.16 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -34.50 361.80 -7.05 -41.55 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.60 Total: 12.57 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.03 Total: 7.57 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: 0.20 Total: -57.21 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.05 Total: -25.49 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.50 -7.05 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156095895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.922 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds