Wall clock time and date at job start Tue Mar 31 2020 13:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35964 * 116.99835 * 2 1 4 4 C 1.38480 * 120.04975 * 0.25879 * 3 2 1 5 5 C 1.38811 * 119.94766 * 180.29158 * 4 3 2 6 6 N 1.40098 * 119.97739 * 179.72465 * 5 4 3 7 7 C 1.34780 * 119.99866 * 145.85917 * 6 5 4 8 8 O 1.21589 * 120.00057 * 354.86189 * 7 6 5 9 9 N 1.34773 * 120.00013 * 174.86958 * 7 6 5 10 10 C 1.46500 * 120.00146 * 179.97438 * 9 7 6 11 11 H 1.09009 * 109.46844 * 34.72424 * 10 9 7 12 12 C 1.52992 * 109.47254 * 274.72668 * 10 9 7 13 13 C 1.50698 * 109.47179 * 154.71928 * 10 9 7 14 14 H 1.07998 * 120.00234 * 0.02562 * 13 10 9 15 15 C 1.37877 * 119.99796 * 179.97438 * 13 10 9 16 16 N 1.31516 * 120.00390 * 0.02562 * 15 13 10 17 17 Si 1.86806 * 119.99965 * 180.02562 * 15 13 10 18 18 H 1.48496 * 109.46845 * 60.00091 * 17 15 13 19 19 H 1.48500 * 109.46815 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47031 * 299.99998 * 17 15 13 21 21 C 1.38863 * 120.04087 * 359.45497 * 5 4 3 22 22 C 1.38140 * 120.09463 * 0.26949 * 21 5 4 23 23 C 1.38716 * 120.05029 * 0.02562 * 22 21 5 24 24 N 1.40278 * 120.02140 * 179.97438 * 23 22 21 25 25 C 1.34776 * 120.00008 * 32.46676 * 24 23 22 26 26 C 1.50706 * 120.00133 * 175.41204 * 25 24 23 27 27 O 1.21303 * 119.99818 * 355.40963 * 25 24 23 28 28 H 1.09007 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46976 * 299.99398 * 1 2 3 30 30 H 1.08993 * 109.47101 * 59.99827 * 1 2 3 31 31 H 1.08003 * 120.02168 * 0.03615 * 4 3 2 32 32 H 0.97003 * 120.00461 * 325.84958 * 6 5 4 33 33 H 0.96999 * 120.00428 * 359.71816 * 9 7 6 34 34 H 1.09001 * 109.47765 * 179.97438 * 12 10 9 35 35 H 1.09009 * 109.46996 * 299.99663 * 12 10 9 36 36 H 1.08993 * 109.47559 * 59.99363 * 12 10 9 37 37 H 0.96992 * 120.00289 * 179.97438 * 16 15 13 38 38 H 1.07998 * 119.95721 * 180.29774 * 21 5 4 39 39 H 1.07996 * 119.97752 * 180.02562 * 22 21 5 40 40 H 0.97009 * 120.00212 * 212.46718 * 24 23 22 41 41 H 1.08994 * 109.47224 * 359.97438 * 26 25 24 42 42 H 1.09002 * 109.46970 * 120.00019 * 26 25 24 43 43 H 1.09000 * 109.46488 * 240.00005 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2930 2.3735 0.0054 5 6 1.9254 3.6092 -0.0007 6 7 1.1639 4.7852 -0.0011 7 6 1.6112 5.8778 0.6490 8 8 2.6280 5.8165 1.3130 9 7 0.9313 7.0384 0.5634 10 6 1.4172 8.2259 1.2705 11 1 2.5073 8.2261 1.2738 12 6 0.9029 8.2076 2.7112 13 6 0.9168 9.4650 0.5740 14 1 0.2983 9.3769 -0.3070 15 6 1.2477 10.7113 1.0621 16 7 2.0004 10.8188 2.1352 17 14 0.6268 12.2474 0.1993 18 1 -0.8582 12.2465 0.1947 19 1 1.1194 13.4511 0.9160 20 1 1.1261 12.2657 -1.1991 21 6 3.3122 3.6805 -0.0008 22 6 4.0653 2.5224 -0.0005 23 6 3.4374 1.2855 -0.0005 24 7 4.2028 0.1099 -0.0007 25 6 5.3958 0.0824 0.6257 26 6 6.1706 -1.2072 0.7148 27 8 5.8459 1.0956 1.1179 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 0.2144 2.3183 0.0102 32 1 0.3148 4.8131 -0.4693 33 1 0.1224 7.0884 0.0305 34 1 1.2647 9.0909 3.2375 35 1 -0.1872 8.2073 2.7079 36 1 1.2648 7.3113 3.2149 37 1 2.2334 11.6955 2.4784 38 1 3.8027 4.6426 -0.0007 39 1 5.1437 2.5801 -0.0002 40 1 3.8734 -0.6833 -0.4517 41 1 5.6119 -2.0016 0.2201 42 1 7.1376 -1.0844 0.2269 43 1 6.3225 -1.4681 1.7621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156095987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:03 Heat of formation + Delta-G solvation = -68.100745 kcal Electronic energy + Delta-G solvation = -26565.761240 eV Core-core repulsion = 22611.892055 eV Total energy + Delta-G solvation = -3953.869185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91846 -39.78286 -39.21255 -37.27208 -35.43162 -34.61913 -33.57109 -32.33160 -30.63772 -30.11121 -29.01434 -28.16877 -26.75430 -25.24552 -23.03601 -22.74832 -21.14939 -20.55571 -19.82610 -18.56919 -18.31382 -17.48056 -16.97089 -16.50836 -16.06788 -15.74426 -15.53483 -15.25638 -15.04123 -14.63790 -14.37327 -14.07147 -13.74840 -13.62086 -13.21266 -13.06806 -12.78000 -12.66175 -12.42707 -12.34936 -11.91769 -11.80599 -11.65006 -11.31501 -11.09822 -10.97698 -10.76761 -10.56411 -10.31348 -10.22873 -9.88185 -9.50598 -9.30887 -9.04887 -8.56075 -8.48296 -7.96646 -7.39765 -6.12136 -4.21702 1.28923 1.48652 2.48028 2.92372 3.02774 3.24593 3.25733 3.31317 3.33686 3.66684 4.05821 4.32261 4.55816 4.78117 4.84314 4.86659 4.93588 4.95766 5.11705 5.19327 5.20466 5.27194 5.36834 5.44409 5.64375 5.74121 5.85208 6.15945 6.44736 6.62696 6.69642 6.81919 6.96258 6.98587 7.13199 7.23701 7.26962 7.36209 7.46105 7.61967 7.83560 7.99504 8.03129 8.15566 8.72292 8.84602 9.23729 9.46611 10.93888 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.002571 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.610907 B =10887.998259 C =11762.322895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.228 4.228 5 C 0.210 3.790 6 N -0.696 5.696 7 C 0.691 3.309 8 O -0.576 6.576 9 N -0.718 5.718 10 C 0.280 3.720 11 H 0.050 0.950 12 C -0.148 4.148 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.066 3.934 16 N -0.883 5.883 17 Si 0.903 3.097 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.136 4.136 22 C -0.065 4.065 23 C 0.084 3.916 24 N -0.660 5.660 25 C 0.505 3.495 26 C -0.167 4.167 27 O -0.528 6.528 28 H 0.097 0.903 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.132 0.868 32 H 0.402 0.598 33 H 0.386 0.614 34 H 0.091 0.909 35 H 0.025 0.975 36 H 0.015 0.985 37 H 0.265 0.735 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.410 0.590 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.882 -25.256 -7.347 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.234 6.234 3 C 0.072 3.928 4 C -0.250 4.250 5 C 0.113 3.887 6 N -0.344 5.344 7 C 0.391 3.609 8 O -0.453 6.453 9 N -0.370 5.370 10 C 0.179 3.821 11 H 0.068 0.932 12 C -0.207 4.207 13 C -0.573 4.573 14 H 0.079 0.921 15 C -0.137 4.137 16 N -0.520 5.520 17 Si 0.730 3.270 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.157 4.157 22 C -0.086 4.086 23 C -0.011 4.011 24 N -0.306 5.306 25 C 0.293 3.707 26 C -0.227 4.227 27 O -0.404 6.404 28 H 0.116 0.884 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.236 0.764 33 H 0.218 0.782 34 H 0.109 0.891 35 H 0.045 0.955 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.246 0.754 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.429 -24.513 -6.190 25.286 hybrid contribution -1.792 0.631 -1.043 2.167 sum -2.221 -23.882 -7.233 25.052 Atomic orbital electron populations 1.23024 0.78298 1.03658 1.01583 1.85972 1.21464 1.26530 1.89414 1.18314 0.90040 0.84226 1.00178 1.20634 0.99760 0.90479 1.14143 1.17268 0.90677 0.84497 0.96281 1.42918 1.24469 1.10477 1.56514 1.16173 0.84097 0.80396 0.80186 1.90922 1.25724 1.83739 1.44917 1.45874 1.28599 1.09458 1.53031 1.18690 0.96086 0.79018 0.88345 0.93183 1.22108 0.98447 1.00911 0.99253 1.21158 1.33488 0.90224 1.12456 0.92132 1.24884 0.94811 0.99052 0.94947 1.69892 1.35799 1.24412 1.21870 0.86488 0.79027 0.81865 0.79575 1.20193 1.21108 1.20178 1.21170 0.91995 0.99690 1.02880 1.21105 1.01371 0.89167 0.96913 1.16980 0.86523 0.87053 1.10546 1.43397 1.19547 1.13356 1.54329 1.20973 0.81106 0.91447 0.77186 1.21829 1.01208 0.94397 1.05254 1.90757 1.68004 1.35408 1.46199 0.88418 0.92558 0.92618 0.84980 0.76362 0.78201 0.89067 0.95545 0.96562 0.92452 0.83767 0.83248 0.75391 0.90497 0.88539 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.24 10.01 -19.63 -0.20 -3.44 16 3 C 0.12 1.50 6.70 -39.09 -0.26 1.24 16 4 C -0.23 -2.91 8.95 -39.28 -0.35 -3.26 16 5 C 0.21 3.29 6.27 -83.64 -0.52 2.77 16 6 N -0.70 -10.84 5.35 -14.20 -0.08 -10.92 16 7 C 0.69 14.23 8.27 -86.92 -0.72 13.51 16 8 O -0.58 -14.31 13.71 5.29 0.07 -14.24 16 9 N -0.72 -14.96 5.07 -59.81 -0.30 -15.26 16 10 C 0.28 7.18 2.56 -69.09 -0.18 7.00 16 11 H 0.05 1.48 7.57 -51.92 -0.39 1.09 16 12 C -0.15 -3.75 9.26 37.15 0.34 -3.41 16 13 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 16 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 17 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 C -0.14 -2.36 8.65 -39.39 -0.34 -2.70 16 22 C -0.06 -1.03 8.71 -39.44 -0.34 -1.37 16 23 C 0.08 1.14 6.37 -83.42 -0.53 0.61 16 24 N -0.66 -6.92 5.22 -9.70 -0.05 -6.97 16 25 C 0.50 5.64 7.80 -10.98 -0.09 5.56 16 26 C -0.17 -1.00 10.39 36.01 0.37 -0.63 16 27 O -0.53 -8.47 14.38 5.54 0.08 -8.39 16 28 H 0.10 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.38 7.65 -51.93 -0.40 -0.01 16 30 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 31 H 0.13 1.32 6.29 -52.48 -0.33 0.99 16 32 H 0.40 4.69 8.84 -40.82 -0.36 4.33 16 33 H 0.39 6.77 8.56 -40.82 -0.35 6.42 16 34 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 35 H 0.03 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.14 2.84 6.44 -52.49 -0.34 2.51 16 39 H 0.15 2.45 6.02 -52.49 -0.32 2.14 16 40 H 0.41 2.97 8.35 -40.82 -0.34 2.63 16 41 H 0.08 0.25 7.92 -51.93 -0.41 -0.16 16 42 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 361.83 15.07 5.45 5.45 Total: -1.00 -35.14 361.83 -7.04 -42.18 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.60 Total: 12.56 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -2.02 Total: 7.78 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: 0.20 Total: -57.51 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.04 Total: -26.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.14 -7.04 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156095987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.920 kcal (2) G-P(sol) polarization free energy of solvation -35.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds