Wall clock time and date at job start Tue Mar 31 2020 13:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34775 * 119.99891 * 2 1 4 4 O 1.21588 * 120.00155 * 0.02562 * 3 2 1 5 5 C 1.47619 * 120.00040 * 180.02562 * 3 2 1 6 6 C 1.39704 * 120.06337 * 359.97438 * 5 3 2 7 7 C 1.37797 * 120.03691 * 180.02562 * 6 5 3 8 8 C 1.38815 * 120.16410 * 359.97438 * 7 6 5 9 9 O 1.35790 * 119.93674 * 179.97438 * 8 7 6 10 10 C 1.42893 * 117.00215 * 0.02981 * 9 8 7 11 11 C 1.39528 * 120.12334 * 0.02562 * 8 7 6 12 12 N 1.40194 * 120.01718 * 179.97438 * 11 8 7 13 13 C 1.34777 * 120.00097 * 155.48003 * 12 11 8 14 14 O 1.21588 * 119.99757 * 354.37103 * 13 12 11 15 15 N 1.34770 * 120.00132 * 174.37579 * 13 12 11 16 16 C 1.46495 * 120.00185 * 180.02562 * 15 13 12 17 17 H 1.08995 * 109.47351 * 34.99828 * 16 15 13 18 18 C 1.53007 * 109.47263 * 274.99549 * 16 15 13 19 19 C 1.50704 * 109.47563 * 154.99636 * 16 15 13 20 20 H 1.07998 * 119.99527 * 359.97438 * 19 16 15 21 21 C 1.37878 * 120.00331 * 180.27225 * 19 16 15 22 22 N 1.31516 * 119.99543 * 359.72822 * 21 19 16 23 23 Si 1.86801 * 120.00011 * 179.72397 * 21 19 16 24 24 H 1.48496 * 109.46935 * 90.00336 * 23 21 19 25 25 H 1.48493 * 109.46819 * 210.00208 * 23 21 19 26 26 H 1.48495 * 109.47232 * 330.00102 * 23 21 19 27 27 C 1.38280 * 119.96636 * 0.25573 * 11 8 7 28 28 H 1.09001 * 109.47096 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47291 * 299.99988 * 1 2 3 30 30 H 1.09000 * 109.47378 * 60.00219 * 1 2 3 31 31 H 0.96996 * 120.00347 * 180.02562 * 2 1 3 32 32 H 1.07999 * 119.98543 * 359.97438 * 6 5 3 33 33 H 1.08004 * 119.92273 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.47310 * 179.97438 * 10 9 8 35 35 H 1.09005 * 109.46700 * 299.99525 * 10 9 8 36 36 H 1.08995 * 109.47583 * 59.99494 * 10 9 8 37 37 H 0.97001 * 120.00238 * 335.48798 * 12 11 8 38 38 H 0.97009 * 119.99991 * 359.97438 * 15 13 12 39 39 H 1.09004 * 109.46936 * 300.00514 * 18 16 15 40 40 H 1.09004 * 109.46532 * 59.99926 * 18 16 15 41 41 H 1.08997 * 109.47274 * 179.97438 * 18 16 15 42 42 H 0.97010 * 119.99522 * 179.97438 * 22 21 19 43 43 H 1.08008 * 120.08329 * 179.72339 * 27 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5308 2.2202 0.0005 5 6 3.6150 1.1672 -0.0006 6 6 4.3148 -0.0418 -0.0006 7 6 5.6928 -0.0412 -0.0006 8 6 6.3897 1.1594 -0.0011 9 8 7.7476 1.1546 -0.0006 10 6 8.3920 -0.1208 -0.0001 11 6 5.6976 2.3709 -0.0011 12 7 6.4037 3.5820 -0.0011 13 6 5.8257 4.6990 -0.4855 14 8 4.7331 4.6374 -1.0154 15 7 6.4588 5.8843 -0.3826 16 6 5.8303 7.0986 -0.9086 17 1 4.7513 7.0402 -0.7660 18 6 6.1413 7.2283 -2.4011 19 6 6.3693 8.3007 -0.1769 20 1 7.1061 8.1729 0.6024 21 6 5.9174 9.5631 -0.4980 22 7 5.0199 9.7186 -1.4467 23 14 6.5799 11.0525 0.4143 24 1 7.7786 11.5724 -0.2914 25 1 5.5367 12.1082 0.4618 26 1 6.9511 10.6608 1.7977 27 6 4.3148 2.3763 0.0048 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9499 -0.8400 -0.0004 32 1 3.7757 -0.9776 0.0003 33 1 6.2320 -0.9770 -0.0002 34 1 9.4731 0.0183 -0.0002 35 1 8.0968 -0.6766 0.8899 36 1 8.0975 -0.6770 -0.8900 37 1 7.3083 3.6161 0.3474 38 1 7.3304 5.9335 0.0405 39 1 7.2204 7.2866 -2.5437 40 1 5.7513 6.3588 -2.9304 41 1 5.6733 8.1315 -2.7926 42 1 4.7017 10.6068 -1.6724 43 1 3.7771 3.3130 0.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156116928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:33 Heat of formation + Delta-G solvation = -65.557986 kcal Electronic energy + Delta-G solvation = -26818.271091 eV Core-core repulsion = 22864.512168 eV Total energy + Delta-G solvation = -3953.758923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.85085 -39.52740 -39.20031 -37.07604 -35.15817 -34.66414 -34.14684 -32.39865 -30.55578 -30.08005 -28.31760 -27.93067 -26.44397 -25.20729 -23.28445 -22.99447 -21.25433 -20.43458 -19.77984 -18.70718 -18.15707 -17.80699 -16.74541 -16.23537 -15.98326 -15.79939 -15.44143 -15.19128 -14.93890 -14.71052 -14.15287 -14.12553 -13.88286 -13.60053 -13.18243 -13.13545 -12.88449 -12.63301 -12.41615 -12.35317 -12.08119 -11.74412 -11.39664 -11.22865 -11.06469 -10.95699 -10.73782 -10.34628 -10.20720 -10.18738 -9.93402 -9.32614 -9.23952 -8.99498 -8.61934 -8.52533 -8.01505 -7.59335 -6.08243 -4.17398 0.86929 1.31181 2.84148 2.96934 3.06523 3.25360 3.27633 3.34790 3.37804 3.71418 4.05634 4.35712 4.55981 4.66502 4.74834 4.86148 4.89332 4.98373 5.06618 5.18191 5.22358 5.24321 5.37107 5.48035 5.65036 5.77530 5.97154 6.02796 6.26560 6.29125 6.57414 6.83026 6.88688 7.03034 7.16267 7.23847 7.29216 7.39964 7.51034 7.66402 7.87837 8.03547 8.19567 8.23809 8.76593 8.88072 9.26544 9.50583 10.97871 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012778 B = 0.003266 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.663579 B = 8571.388564 C =10320.336994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.738 5.738 3 C 0.560 3.440 4 O -0.523 6.523 5 C -0.152 4.152 6 C -0.079 4.079 7 C -0.195 4.195 8 C 0.110 3.890 9 O -0.315 6.315 10 C 0.029 3.971 11 C 0.155 3.845 12 N -0.685 5.685 13 C 0.691 3.309 14 O -0.576 6.576 15 N -0.716 5.716 16 C 0.280 3.720 17 H 0.051 0.949 18 C -0.148 4.148 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.066 3.934 22 N -0.882 5.882 23 Si 0.903 3.097 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.040 4.040 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.399 0.601 32 H 0.125 0.875 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.408 0.592 38 H 0.387 0.613 39 H 0.026 0.974 40 H 0.015 0.985 41 H 0.091 0.909 42 H 0.264 0.736 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -25.471 4.126 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.391 5.391 3 C 0.348 3.652 4 O -0.399 6.399 5 C -0.156 4.156 6 C -0.099 4.099 7 C -0.214 4.214 8 C 0.062 3.938 9 O -0.228 6.228 10 C -0.066 4.066 11 C 0.057 3.943 12 N -0.332 5.332 13 C 0.391 3.609 14 O -0.454 6.454 15 N -0.367 5.367 16 C 0.178 3.822 17 H 0.069 0.931 18 C -0.207 4.207 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.519 5.519 23 Si 0.730 3.270 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.062 4.062 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.233 0.767 32 H 0.143 0.857 33 H 0.153 0.847 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.243 0.757 38 H 0.219 0.781 39 H 0.045 0.955 40 H 0.035 0.965 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.134 -24.261 3.528 24.543 hybrid contribution 1.520 0.024 0.738 1.690 sum 2.654 -24.237 4.267 24.752 Atomic orbital electron populations 1.21520 0.79453 1.01941 1.02604 1.45675 1.07676 1.08518 1.77234 1.18217 0.87269 0.83632 0.76106 1.90848 1.69802 1.30979 1.48315 1.19630 0.92619 0.93761 1.09585 1.20868 0.93507 0.96684 0.98831 1.20834 0.94817 0.96319 1.09472 1.18893 0.82523 0.92803 0.99605 1.86002 1.16138 1.31910 1.88713 1.23064 0.98075 0.84106 1.01349 1.16783 0.90560 0.82936 1.04011 1.42699 1.18585 1.06244 1.65710 1.16186 0.84676 0.80504 0.79540 1.90881 1.20404 1.84884 1.49199 1.45867 1.22327 1.06514 1.62009 1.18712 0.94650 0.78319 0.90530 0.93084 1.22107 0.98910 1.01245 0.98412 1.21200 1.25251 0.90775 1.19995 0.92064 1.24882 0.94789 0.98920 0.95121 1.69914 1.29291 1.23149 1.29591 0.86428 0.78521 0.82037 0.79977 1.20594 1.21063 1.19875 1.21609 0.91384 0.99956 0.93208 0.90815 0.92145 0.92098 0.76695 0.85739 0.84749 0.88179 0.92578 0.92544 0.75724 0.78114 0.95531 0.96544 0.89097 0.92551 0.80917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.76 10.70 59.84 0.64 1.40 16 2 N -0.74 -7.44 5.66 -68.12 -0.39 -7.82 16 3 C 0.56 8.46 7.76 -12.43 -0.10 8.36 16 4 O -0.52 -10.47 16.34 5.29 0.09 -10.38 16 5 C -0.15 -2.19 5.87 -104.97 -0.62 -2.81 16 6 C -0.08 -0.80 9.53 -39.20 -0.37 -1.18 16 7 C -0.20 -1.94 9.01 -39.53 -0.36 -2.30 16 8 C 0.11 1.40 6.71 -38.89 -0.26 1.13 16 9 O -0.31 -3.47 9.89 -19.08 -0.19 -3.66 16 10 C 0.03 0.19 9.81 101.05 0.99 1.18 16 11 C 0.15 2.49 6.44 -83.54 -0.54 1.95 16 12 N -0.69 -11.45 5.30 -14.14 -0.07 -11.52 16 13 C 0.69 14.72 8.33 -86.92 -0.72 13.99 16 14 O -0.58 -14.56 13.17 5.29 0.07 -14.49 16 15 N -0.72 -15.43 5.07 -59.81 -0.30 -15.73 16 16 C 0.28 7.31 2.56 -69.08 -0.18 7.14 16 17 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 18 C -0.15 -3.80 9.26 37.16 0.34 -3.45 16 19 C -0.53 -14.38 8.73 -34.44 -0.30 -14.68 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.07 1.81 5.31 -17.82 -0.09 1.72 16 22 N -0.88 -25.33 11.33 55.43 0.63 -24.70 16 23 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.04 -0.71 8.26 -39.02 -0.32 -1.03 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.40 2.58 6.85 -40.82 -0.28 2.30 16 32 H 0.12 0.77 6.39 -52.49 -0.34 0.44 16 33 H 0.13 0.88 6.27 -52.48 -0.33 0.55 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.28 7.65 -51.93 -0.40 -0.12 16 36 H 0.06 0.31 7.65 -51.93 -0.40 -0.09 16 37 H 0.41 5.59 8.35 -40.82 -0.34 5.25 16 38 H 0.39 7.11 8.56 -40.82 -0.35 6.76 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 2.52 6.08 -51.93 -0.32 2.20 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.17 3.78 5.36 -52.48 -0.28 3.50 16 LS Contribution 361.54 15.07 5.45 5.45 Total: -1.00 -36.00 361.54 -7.12 -43.12 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -5.50 Total: 12.37 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: -1.88 Total: 11.43 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.14 Total: -59.78 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.03 Total: -28.53 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.00 -7.12 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156116928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.434 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds