Wall clock time and date at job start Tue Mar 31 2020 13:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46952 * 2 1 4 4 C 1.50700 * 109.46843 * 240.00369 * 2 1 3 5 5 H 1.08003 * 119.99218 * 239.99526 * 4 2 1 6 6 C 1.37868 * 120.00336 * 59.99963 * 4 2 1 7 7 N 1.31518 * 119.99764 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00262 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47276 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47305 * 119.99965 * 8 6 4 11 11 H 1.48501 * 109.47551 * 239.99985 * 8 6 4 12 12 N 1.46501 * 109.46835 * 119.99964 * 2 1 3 13 13 C 1.34774 * 120.00209 * 274.99721 * 12 2 1 14 14 O 1.21589 * 119.99799 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99834 * 180.02562 * 13 12 2 16 16 C 1.40166 * 119.99972 * 184.45733 * 15 13 12 17 17 C 1.38718 * 120.08896 * 325.36245 * 16 15 13 18 18 C 1.38202 * 119.98339 * 179.97438 * 17 16 15 19 19 C 1.38265 * 120.16648 * 0.02562 * 18 17 16 20 20 C 1.38250 * 120.17341 * 0.02562 * 19 18 17 21 21 C 1.38543 * 120.01705 * 359.95211 * 20 19 18 22 22 O 1.35986 * 120.08451 * 180.02562 * 21 20 19 23 23 C 1.42897 * 116.99676 * 359.97438 * 22 21 20 24 24 C 1.53008 * 109.47073 * 179.97438 * 23 22 21 25 25 C 1.50695 * 109.47211 * 180.02562 * 24 23 22 26 26 N 1.34775 * 120.00105 * 180.02562 * 25 24 23 27 27 O 1.21281 * 120.00100 * 0.02562 * 25 24 23 28 28 H 1.09002 * 109.47577 * 59.99834 * 1 2 3 29 29 H 1.09000 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47226 * 299.99756 * 1 2 3 31 31 H 0.97003 * 119.99690 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99674 * 95.00463 * 12 2 1 33 33 H 0.96995 * 120.00429 * 4.46311 * 15 13 12 34 34 H 1.07997 * 120.00337 * 0.02562 * 17 16 15 35 35 H 1.08001 * 119.91547 * 180.29829 * 18 17 16 36 36 H 1.08001 * 119.91314 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.99229 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47674 * 299.99940 * 23 22 21 39 39 H 1.09001 * 109.46996 * 60.00751 * 23 22 21 40 40 H 1.08998 * 109.46873 * 300.00494 * 24 23 22 41 41 H 1.09004 * 109.46277 * 60.00090 * 24 23 22 42 42 H 0.97006 * 119.99619 * 0.02562 * 26 25 24 43 43 H 0.97000 * 119.99887 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0079 9 1 3.1483 -2.2855 -3.6039 10 1 1.1676 -1.5864 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8575 1.1613 2.4118 15 7 2.5967 -0.6536 3.4575 16 6 2.6423 0.0197 4.6860 17 6 2.9374 1.3745 4.7260 18 6 2.9813 2.0363 5.9385 19 6 2.7322 1.3512 7.1134 20 6 2.4385 0.0006 7.0814 21 6 2.3921 -0.6700 5.8700 22 8 2.1028 -1.9983 5.8368 23 6 1.8578 -2.6403 7.0897 24 6 1.5513 -4.1206 6.8530 25 6 1.2922 -4.7974 8.1742 26 7 0.9999 -6.1126 8.2118 27 8 1.3468 -4.1588 9.2038 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 0.7086 1.1614 -3.4843 32 1 2.2490 -1.6318 1.1526 33 1 2.8889 -1.5767 3.3992 34 1 3.1320 1.9121 3.8098 35 1 3.2064 3.0921 5.9680 36 1 2.7680 1.8723 8.0587 37 1 2.2448 -0.5317 8.0009 38 1 2.7396 -2.5484 7.7238 39 1 1.0068 -2.1674 7.5799 40 1 0.6694 -4.2121 6.2191 41 1 2.4021 -4.5937 6.3625 42 1 0.9566 -6.6235 7.3883 43 1 0.8335 -6.5483 9.0623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157220555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:22 Heat of formation + Delta-G solvation = -82.588555 kcal Electronic energy + Delta-G solvation = -26317.758888 eV Core-core repulsion = 22363.261464 eV Total energy + Delta-G solvation = -3954.497424 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61029 -39.93921 -39.05296 -37.29762 -35.08132 -34.18373 -34.09397 -32.40815 -32.17283 -30.05932 -29.38238 -27.98468 -25.24276 -25.14940 -22.89675 -22.01142 -21.17668 -20.62764 -19.75248 -18.59055 -18.05268 -17.67084 -17.32061 -16.68489 -16.61803 -15.97702 -15.58796 -15.12624 -15.06541 -14.65820 -14.48884 -14.19485 -13.93458 -13.75146 -13.46017 -13.20503 -13.05690 -12.38320 -12.17565 -12.06750 -11.72897 -11.55439 -11.16445 -11.08546 -10.99624 -10.92626 -10.73683 -10.51986 -10.30830 -10.23112 -10.20073 -9.98393 -9.31927 -9.02471 -8.56864 -8.43582 -8.00007 -7.52547 -6.12315 -4.21293 1.47753 1.53381 2.13795 2.61251 3.22875 3.24261 3.32034 3.35207 3.47100 3.73103 4.09291 4.25596 4.32687 4.56685 4.66321 4.93266 4.94799 5.03782 5.08865 5.20338 5.27866 5.34713 5.43624 5.57164 5.73617 6.01595 6.25652 6.26927 6.39267 6.65450 6.78124 6.79850 6.83055 6.99849 7.01520 7.15210 7.27118 7.45703 7.50862 7.63530 7.74210 7.85960 8.03078 8.16584 8.75237 8.88287 9.28392 9.47866 10.93802 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.002788 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.185312 B =10041.344584 C =11770.000938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.281 3.719 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.719 5.719 13 C 0.694 3.306 14 O -0.585 6.585 15 N -0.689 5.689 16 C 0.155 3.845 17 C -0.088 4.088 18 C -0.135 4.135 19 C -0.108 4.108 20 C -0.191 4.191 21 C 0.093 3.907 22 O -0.318 6.318 23 C 0.077 3.923 24 C -0.144 4.144 25 C 0.525 3.475 26 N -0.854 5.854 27 O -0.544 6.544 28 H 0.090 0.910 29 H 0.025 0.975 30 H 0.015 0.985 31 H 0.264 0.736 32 H 0.386 0.614 33 H 0.404 0.596 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.404 0.596 43 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.519 -11.496 20.058 23.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.370 5.370 13 C 0.394 3.606 14 O -0.463 6.463 15 N -0.337 5.337 16 C 0.058 3.942 17 C -0.109 4.109 18 C -0.154 4.154 19 C -0.128 4.128 20 C -0.210 4.210 21 C 0.046 3.954 22 O -0.232 6.232 23 C 0.001 3.999 24 C -0.184 4.184 25 C 0.309 3.691 26 N -0.418 5.418 27 O -0.420 6.420 28 H 0.109 0.891 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.218 0.782 33 H 0.239 0.761 34 H 0.169 0.831 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.146 0.854 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.233 0.767 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.184 -9.867 20.196 22.583 hybrid contribution 0.312 -1.893 -0.736 2.055 sum 2.496 -11.760 19.459 22.874 Atomic orbital electron populations 1.22104 0.98575 0.99066 1.00927 1.18673 0.90835 0.93747 0.78870 0.93270 1.21249 1.32364 1.13230 0.90253 0.92034 1.24883 0.94845 0.94986 0.99039 1.69920 1.35878 1.22459 1.23780 0.86384 0.78572 0.79497 0.82555 1.19764 1.20897 1.20884 1.45840 1.68663 1.13283 1.09240 1.16143 0.78542 0.85474 0.80401 1.90854 1.57246 1.14154 1.84014 1.42627 1.68482 1.16324 1.06241 1.16889 1.02788 0.92047 0.82433 1.21348 0.97489 0.92504 0.99541 1.20997 1.02502 1.00089 0.91831 1.20852 1.00083 0.93517 0.98305 1.21013 1.07877 0.96063 0.96046 1.18662 1.00537 0.82926 0.93303 1.85917 1.85550 1.19779 1.31953 1.22319 1.01949 0.90999 0.84625 1.21476 1.05688 0.95274 0.95937 1.20351 0.75423 0.82360 0.90927 1.43829 1.74381 1.10348 1.13243 1.90784 1.51147 1.64381 1.35721 0.89129 0.95562 0.96561 0.92615 0.78199 0.76132 0.83107 0.85769 0.86074 0.85357 0.91221 0.91190 0.87330 0.87408 0.76708 0.76562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.38 16 2 C 0.28 7.16 2.56 -69.08 -0.18 6.98 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -14.02 8.73 -34.44 -0.30 -14.32 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.80 11.32 55.43 0.63 -24.17 16 8 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.72 -15.12 5.07 -59.81 -0.30 -15.43 16 13 C 0.69 14.41 8.38 -86.92 -0.73 13.68 16 14 O -0.58 -14.21 13.42 5.29 0.07 -14.13 16 15 N -0.69 -11.37 5.20 -14.10 -0.07 -11.44 16 16 C 0.16 2.51 6.32 -83.48 -0.53 1.98 16 17 C -0.09 -1.45 8.70 -39.42 -0.34 -1.79 16 18 C -0.14 -1.82 10.04 -39.58 -0.40 -2.22 16 19 C -0.11 -1.31 10.04 -39.57 -0.40 -1.70 16 20 C -0.19 -2.37 9.04 -39.46 -0.36 -2.73 16 21 C 0.09 1.30 6.70 -39.08 -0.26 1.04 16 22 O -0.32 -3.88 9.69 -19.70 -0.19 -4.07 16 23 C 0.08 0.74 4.03 37.16 0.15 0.89 16 24 C -0.14 -0.95 6.07 -27.88 -0.17 -1.12 16 25 C 0.52 4.01 8.10 -10.99 -0.09 3.93 16 26 N -0.85 -3.32 8.87 31.22 0.28 -3.05 16 27 O -0.54 -6.52 16.82 5.56 0.09 -6.43 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 6.95 8.56 -40.82 -0.35 6.60 16 33 H 0.40 5.49 8.58 -40.82 -0.35 5.14 16 34 H 0.15 2.80 6.19 -52.49 -0.32 2.47 16 35 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 38 H 0.07 0.66 7.62 -51.93 -0.40 0.27 16 39 H 0.07 0.71 7.62 -51.93 -0.40 0.32 16 40 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.40 0.43 8.83 -40.82 -0.36 0.07 16 43 H 0.40 1.29 8.93 -40.82 -0.36 0.93 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -34.55 365.53 -8.02 -42.56 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.66 Total: 12.28 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.35 Total: 2.90 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.53 Total: -54.09 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.03 Total: -24.63 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.55 -8.02 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157220555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.025 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds