Wall clock time and date at job start Tue Mar 31 2020 13:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46952 * 2 1 4 4 C 1.50700 * 109.46843 * 240.00369 * 2 1 3 5 5 H 1.08003 * 119.99218 * 239.99526 * 4 2 1 6 6 C 1.37868 * 120.00336 * 59.99963 * 4 2 1 7 7 N 1.31518 * 119.99764 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00262 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47276 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47305 * 119.99965 * 8 6 4 11 11 H 1.48501 * 109.47551 * 239.99985 * 8 6 4 12 12 N 1.46501 * 109.46835 * 119.99964 * 2 1 3 13 13 C 1.34774 * 120.00209 * 274.99721 * 12 2 1 14 14 O 1.21589 * 119.99799 * 0.02562 * 13 12 2 15 15 N 1.34777 * 119.99834 * 180.02562 * 13 12 2 16 16 C 1.40166 * 119.99972 * 184.45733 * 15 13 12 17 17 C 1.38718 * 120.08896 * 325.36245 * 16 15 13 18 18 C 1.38202 * 119.98339 * 179.97438 * 17 16 15 19 19 C 1.38265 * 120.16648 * 0.02562 * 18 17 16 20 20 C 1.38250 * 120.17341 * 0.02562 * 19 18 17 21 21 C 1.38543 * 120.01705 * 359.95211 * 20 19 18 22 22 O 1.35986 * 120.08451 * 180.02562 * 21 20 19 23 23 C 1.42897 * 116.99676 * 359.97438 * 22 21 20 24 24 C 1.53008 * 109.47073 * 179.97438 * 23 22 21 25 25 C 1.50695 * 109.47211 * 180.02562 * 24 23 22 26 26 N 1.34775 * 120.00105 * 180.02562 * 25 24 23 27 27 O 1.21281 * 120.00100 * 0.02562 * 25 24 23 28 28 H 1.09002 * 109.47577 * 59.99834 * 1 2 3 29 29 H 1.09000 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47226 * 299.99756 * 1 2 3 31 31 H 0.97003 * 119.99690 * 179.97438 * 7 6 4 32 32 H 0.96999 * 119.99674 * 95.00463 * 12 2 1 33 33 H 0.96995 * 120.00429 * 4.46311 * 15 13 12 34 34 H 1.07997 * 120.00337 * 0.02562 * 17 16 15 35 35 H 1.08001 * 119.91547 * 180.29829 * 18 17 16 36 36 H 1.08001 * 119.91314 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.99229 * 179.97438 * 20 19 18 38 38 H 1.08998 * 109.47674 * 299.99940 * 23 22 21 39 39 H 1.09001 * 109.46996 * 60.00751 * 23 22 21 40 40 H 1.08998 * 109.46873 * 300.00494 * 24 23 22 41 41 H 1.09004 * 109.46277 * 60.00090 * 24 23 22 42 42 H 0.97006 * 119.99619 * 0.02562 * 26 25 24 43 43 H 0.97000 * 119.99887 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8298 -2.6033 8 14 2.3224 -1.1194 -4.0079 9 1 3.1483 -2.2855 -3.6039 10 1 1.1676 -1.5864 -4.8165 11 1 3.1471 -0.1856 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3572 14 8 1.8575 1.1613 2.4118 15 7 2.5967 -0.6536 3.4575 16 6 2.6423 0.0197 4.6860 17 6 2.9374 1.3745 4.7260 18 6 2.9813 2.0363 5.9385 19 6 2.7322 1.3512 7.1134 20 6 2.4385 0.0006 7.0814 21 6 2.3921 -0.6700 5.8700 22 8 2.1028 -1.9983 5.8368 23 6 1.8578 -2.6403 7.0897 24 6 1.5513 -4.1206 6.8530 25 6 1.2922 -4.7974 8.1742 26 7 0.9999 -6.1126 8.2118 27 8 1.3468 -4.1588 9.2038 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 0.7086 1.1614 -3.4843 32 1 2.2490 -1.6318 1.1526 33 1 2.8889 -1.5767 3.3992 34 1 3.1320 1.9121 3.8098 35 1 3.2064 3.0921 5.9680 36 1 2.7680 1.8723 8.0587 37 1 2.2448 -0.5317 8.0009 38 1 2.7396 -2.5484 7.7238 39 1 1.0068 -2.1674 7.5799 40 1 0.6694 -4.2121 6.2191 41 1 2.4021 -4.5937 6.3625 42 1 0.9566 -6.6235 7.3883 43 1 0.8335 -6.5483 9.0623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157220555.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:21 Heat of formation + Delta-G solvation = -109.767713 kcal Electronic energy + Delta-G solvation = -26318.937464 eV Core-core repulsion = 22363.261464 eV Total energy + Delta-G solvation = -3955.676000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.80168 -40.79641 -40.24859 -38.38233 -36.85432 -35.62553 -34.70919 -34.31263 -32.87966 -31.42615 -30.72165 -29.44887 -27.32209 -25.93038 -24.27488 -23.04177 -22.65127 -21.54584 -21.27355 -19.84274 -19.43027 -18.46599 -18.14234 -17.82354 -17.44697 -17.39416 -16.85666 -16.71952 -16.09847 -15.95594 -15.78112 -15.54300 -15.12090 -14.93719 -14.57134 -14.39555 -14.26736 -14.04526 -13.73725 -13.04488 -12.99352 -12.94275 -12.83408 -12.71476 -12.56646 -12.26636 -12.14211 -12.09063 -11.74284 -11.38428 -11.17261 -11.07338 -10.96568 -10.67344 -10.60083 -9.84304 -9.51975 -8.75172 -8.16082 -6.33335 0.35003 0.45174 1.46354 1.46976 1.57835 1.59103 1.75377 1.90843 2.21142 2.43792 2.83666 2.90484 3.14600 3.45720 3.65206 3.94249 3.96899 4.06131 4.18116 4.27073 4.46329 4.49807 4.59036 4.74368 4.74641 4.77040 4.91088 4.95077 5.10836 5.18688 5.34310 5.41464 5.56272 5.60026 5.65409 5.68688 5.85560 5.87176 5.87879 6.10760 6.27848 6.38708 6.43789 6.74713 7.25287 7.30255 7.35567 7.70351 8.90745 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013055 B = 0.002788 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2144.185312 B =10041.344584 C =11770.000938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.289 3.711 3 H 0.000 1.000 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.714 5.714 13 C 0.693 3.307 14 O -0.625 6.625 15 N -0.670 5.670 16 C 0.121 3.879 17 C -0.111 4.111 18 C -0.140 4.140 19 C -0.095 4.095 20 C -0.190 4.190 21 C 0.097 3.903 22 O -0.321 6.321 23 C 0.072 3.928 24 C -0.137 4.137 25 C 0.524 3.476 26 N -0.834 5.834 27 O -0.594 6.594 28 H 0.068 0.932 29 H 0.040 0.960 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.403 0.597 33 H 0.418 0.582 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.420 0.580 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 -14.017 21.245 25.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.186 3.814 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.367 5.367 13 C 0.394 3.606 14 O -0.506 6.506 15 N -0.319 5.319 16 C 0.026 3.974 17 C -0.131 4.131 18 C -0.159 4.159 19 C -0.114 4.114 20 C -0.209 4.209 21 C 0.049 3.951 22 O -0.235 6.235 23 C -0.004 4.004 24 C -0.176 4.176 25 C 0.309 3.691 26 N -0.398 5.398 27 O -0.475 6.475 28 H 0.087 0.913 29 H 0.059 0.941 30 H 0.028 0.972 31 H 0.075 0.925 32 H 0.238 0.762 33 H 0.256 0.744 34 H 0.137 0.863 35 H 0.161 0.839 36 H 0.175 0.825 37 H 0.169 0.831 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.252 0.748 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 2.689 -12.493 21.415 24.938 hybrid contribution 0.157 -1.121 -0.951 1.478 sum 2.846 -13.614 20.464 24.744 Atomic orbital electron populations 1.21924 0.98471 0.99428 0.99458 1.18254 0.90842 0.91693 0.80629 0.98241 1.21555 1.32526 1.13585 0.90587 0.90718 1.25808 0.94890 0.95610 1.02332 1.70070 1.37011 1.23968 1.24578 0.85258 0.78055 0.78489 0.78267 1.18257 1.20419 1.21080 1.45436 1.68942 1.13905 1.08382 1.16229 0.78330 0.84989 0.81063 1.90833 1.58893 1.16102 1.84786 1.42261 1.67550 1.16724 1.05374 1.17072 1.05222 0.92415 0.82704 1.21240 0.99285 0.93005 0.99616 1.21225 1.02252 1.01108 0.91298 1.21262 0.97639 0.93417 0.99065 1.21354 1.06831 0.96417 0.96261 1.18672 0.99722 0.83799 0.92878 1.85911 1.85182 1.18843 1.33541 1.22498 1.01749 0.92563 0.83578 1.21453 1.07196 0.93245 0.95736 1.20511 0.74948 0.83154 0.90481 1.43689 1.72407 1.09258 1.14479 1.90768 1.53763 1.65673 1.37261 0.91331 0.94073 0.97212 0.92533 0.76215 0.74423 0.86307 0.83930 0.82519 0.83098 0.91072 0.91883 0.85987 0.85247 0.74809 0.75912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.26 71.98 0.67 -6.25 16 2 C 0.29 15.20 2.56 44.25 0.11 15.32 16 3 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 4 C -0.54 -28.72 8.73 25.60 0.22 -28.49 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.01 0.73 5.30 84.65 0.45 1.17 16 7 N -0.92 -52.68 11.32 21.44 0.24 -52.44 16 8 Si 0.97 41.69 29.54 68.60 2.03 43.72 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.71 -30.46 5.07 -461.41 -2.34 -32.80 16 13 C 0.69 29.66 8.38 179.06 1.50 31.16 16 14 O -0.63 -32.06 13.42 -4.00 -0.05 -32.11 16 15 N -0.67 -22.30 5.20 -316.79 -1.65 -23.94 16 16 C 0.12 3.95 6.32 38.17 0.24 4.20 16 17 C -0.11 -3.75 8.70 22.38 0.19 -3.55 16 18 C -0.14 -3.67 10.04 22.27 0.22 -3.45 16 19 C -0.10 -2.05 10.04 22.28 0.22 -1.83 16 20 C -0.19 -4.29 9.04 22.35 0.20 -4.08 16 21 C 0.10 2.59 6.70 22.59 0.15 2.75 16 22 O -0.32 -7.25 9.69 -93.39 -0.91 -8.16 16 23 C 0.07 1.23 4.03 71.98 0.29 1.52 16 24 C -0.14 -1.46 6.07 29.85 0.18 -1.28 16 25 C 0.52 6.97 8.10 87.66 0.71 7.68 16 26 N -0.83 -4.43 8.87 -173.54 -1.54 -5.97 16 27 O -0.59 -13.62 16.82 -3.03 -0.05 -13.67 16 28 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.40 14.24 8.56 -92.71 -0.79 13.45 16 33 H 0.42 11.08 8.58 -92.71 -0.80 10.28 16 34 H 0.12 4.76 6.19 -2.91 -0.02 4.74 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 36 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.15 2.73 6.30 -2.91 -0.02 2.71 16 38 H 0.07 1.22 7.62 -2.39 -0.02 1.20 16 39 H 0.06 1.19 7.62 -2.39 -0.02 1.17 16 40 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.42 -0.39 8.83 -92.70 -0.82 -1.21 16 43 H 0.41 1.73 8.93 -92.71 -0.83 0.91 16 Total: -1.00 -77.83 365.53 -1.04 -78.87 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -2.14 Total: 31.64 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 5.37 Total: 14.87 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -5.29 Total: -115.15 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -1.01 Total: -53.94 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -77.83 -1.04 -78.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157220555.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.900 kcal (2) G-P(sol) polarization free energy of solvation -77.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds