Wall clock time and date at job start Tue Mar 31 2020 13:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34649 * 116.99657 * 2 1 4 4 O 1.21517 * 120.00436 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00155 * 179.97438 * 3 2 1 6 6 C 1.46503 * 119.99564 * 5.00276 * 5 3 2 7 7 C 1.40130 * 120.00565 * 184.99862 * 5 3 2 8 8 C 1.38851 * 119.99887 * 296.00751 * 7 5 3 9 9 C 1.38065 * 120.00193 * 180.02562 * 8 7 5 10 10 C 1.38848 * 119.99581 * 359.97438 * 9 8 7 11 11 N 1.40132 * 119.99845 * 179.97438 * 10 9 8 12 12 C 1.34784 * 119.99587 * 143.37624 * 11 10 9 13 13 O 1.21582 * 120.00261 * 4.84578 * 12 11 10 14 14 N 1.34776 * 119.99201 * 184.84725 * 12 11 10 15 15 C 1.46506 * 119.99492 * 179.97438 * 14 12 11 16 16 H 1.09003 * 109.46994 * 35.00589 * 15 14 12 17 17 C 1.52997 * 109.47474 * 275.00147 * 15 14 12 18 18 C 1.50706 * 109.46947 * 154.99797 * 15 14 12 19 19 H 1.07999 * 119.99763 * 5.70116 * 18 15 14 20 20 C 1.37875 * 119.99509 * 185.69240 * 18 15 14 21 21 N 1.31522 * 119.99710 * 197.36634 * 20 18 15 22 22 Si 1.86797 * 120.00533 * 17.64699 * 20 18 15 23 23 H 1.48495 * 109.47448 * 179.71915 * 22 20 18 24 24 H 1.48500 * 109.46827 * 299.72262 * 22 20 18 25 25 H 1.48501 * 109.47392 * 59.71830 * 22 20 18 26 26 C 1.38851 * 120.00256 * 0.27872 * 10 9 8 27 27 C 1.38059 * 119.99855 * 359.44593 * 26 10 9 28 28 H 1.08999 * 109.47584 * 300.00331 * 1 2 3 29 29 H 1.08994 * 109.47162 * 60.00694 * 1 2 3 30 30 H 1.09006 * 109.47104 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46951 * 269.99852 * 6 5 3 32 32 H 1.09001 * 109.47437 * 29.99763 * 6 5 3 33 33 H 1.09001 * 109.47260 * 150.00038 * 6 5 3 34 34 H 1.08004 * 120.00137 * 359.97438 * 8 7 5 35 35 H 1.08000 * 120.00252 * 179.97438 * 9 8 7 36 36 H 0.96997 * 120.00321 * 323.37899 * 11 10 9 37 37 H 0.96995 * 120.01059 * 0.02562 * 14 12 11 38 38 H 1.09008 * 109.46905 * 55.40089 * 17 15 14 39 39 H 1.09003 * 109.47213 * 175.39605 * 17 15 14 40 40 H 1.08993 * 109.47214 * 295.40092 * 17 15 14 41 41 H 0.97001 * 119.99644 * 355.22668 * 21 20 18 42 42 H 1.07999 * 120.00119 * 179.70240 * 26 10 9 43 43 H 1.07997 * 120.00327 * 180.25911 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1998 0.0000 4 8 1.4014 2.2189 -0.0005 5 7 3.4092 1.2704 0.0005 6 6 4.2069 0.0466 -0.1096 7 6 4.0456 2.5144 0.1063 8 6 3.8866 3.4629 -0.8953 9 6 4.5140 4.6884 -0.7914 10 6 5.3036 4.9724 0.3149 11 7 5.9408 6.2160 0.4201 12 6 6.0602 6.8124 1.6229 13 8 5.6948 6.2333 2.6275 14 7 6.5848 8.0507 1.7118 15 6 6.7141 8.6992 3.0192 16 1 6.9490 7.9496 3.7749 17 6 5.3971 9.3902 3.3782 18 6 7.8197 9.7219 2.9654 19 1 8.3089 9.9394 2.0275 20 6 8.2065 10.3798 4.1137 21 7 8.9073 11.4897 4.0312 22 14 7.7420 9.6906 5.7866 23 1 8.2793 10.5740 6.8524 24 1 6.2630 9.6212 5.9000 25 1 8.3144 8.3287 5.9373 26 6 5.4668 4.0220 1.3138 27 6 4.8348 2.7987 1.2127 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.4090 -0.3462 0.8869 32 1 3.6562 -0.6954 -0.6877 33 1 5.1491 0.2707 -0.6097 34 1 3.2728 3.2418 -1.7560 35 1 4.3907 5.4260 -1.5706 36 1 6.2959 6.6477 -0.3727 37 1 6.8760 8.5129 0.9103 38 1 4.5837 8.6657 3.3372 39 1 5.4659 9.8027 4.3849 40 1 5.2035 10.1944 2.6685 41 1 9.2112 11.8082 3.1669 42 1 6.0848 4.2412 2.1720 43 1 4.9584 2.0610 1.9917 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158365706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:09 Heat of formation + Delta-G solvation = -88.723897 kcal Electronic energy + Delta-G solvation = -26399.341169 eV Core-core repulsion = 22444.577697 eV Total energy + Delta-G solvation = -3954.763472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.04387 -41.50440 -39.95715 -37.96237 -37.08362 -36.61515 -35.28552 -34.41670 -32.03789 -31.67672 -29.85496 -28.68905 -27.33427 -26.86147 -24.67890 -23.82243 -22.93673 -21.65500 -21.51202 -20.24772 -19.35184 -19.10385 -18.68257 -18.44761 -17.77452 -16.94496 -16.72111 -16.46736 -16.07297 -15.54309 -15.29987 -15.09166 -15.06230 -14.68951 -14.56702 -14.43877 -14.17786 -13.97146 -13.90839 -13.70753 -13.49434 -13.35461 -13.23954 -12.98202 -12.44670 -12.39189 -11.94784 -11.84570 -11.79819 -11.66501 -11.49675 -11.22168 -11.07984 -10.46593 -10.22523 -9.98020 -9.97162 -8.99751 -8.79217 -6.44135 0.07485 0.36779 1.02642 1.46825 1.52221 1.56636 1.66073 1.74533 2.08297 2.42547 2.69499 2.94539 3.01846 3.31705 3.88292 3.94249 4.13923 4.30568 4.32522 4.34503 4.41132 4.46886 4.52848 4.62774 4.67041 4.71052 4.77037 4.78930 4.88505 4.98641 5.06695 5.09657 5.27774 5.38037 5.40788 5.44668 5.51772 5.60931 5.62450 5.97686 6.00252 6.10747 6.12667 6.52914 7.09711 7.10945 7.29245 7.56167 8.60039 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027488 B = 0.002352 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.366101 B =11903.899525 C =12118.124482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.364 6.364 3 C 0.643 3.357 4 O -0.596 6.596 5 N -0.549 5.549 6 C 0.080 3.920 7 C 0.117 3.883 8 C -0.084 4.084 9 C -0.128 4.128 10 C 0.162 3.838 11 N -0.677 5.677 12 C 0.695 3.305 13 O -0.618 6.618 14 N -0.712 5.712 15 C 0.263 3.737 16 H 0.025 0.975 17 C -0.156 4.156 18 C -0.611 4.611 19 H 0.043 0.957 20 C -0.005 4.005 21 N -0.926 5.926 22 Si 1.073 2.927 23 H -0.283 1.283 24 H -0.247 1.247 25 H -0.273 1.273 26 C -0.125 4.125 27 C -0.096 4.096 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.141 0.859 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.157 0.843 36 H 0.423 0.577 37 H 0.403 0.597 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.258 0.742 42 H 0.123 0.877 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.143 -25.378 -13.467 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.277 6.277 3 C 0.399 3.601 4 O -0.486 6.486 5 N -0.285 5.285 6 C -0.061 4.061 7 C 0.026 3.974 8 C -0.104 4.104 9 C -0.149 4.149 10 C 0.067 3.933 11 N -0.326 5.326 12 C 0.395 3.605 13 O -0.499 6.499 14 N -0.364 5.364 15 C 0.157 3.843 16 H 0.043 0.957 17 C -0.215 4.215 18 C -0.649 4.649 19 H 0.061 0.939 20 C -0.206 4.206 21 N -0.561 5.561 22 Si 0.896 3.104 23 H -0.208 1.208 24 H -0.172 1.172 25 H -0.198 1.198 26 C -0.146 4.146 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.154 0.846 35 H 0.175 0.825 36 H 0.261 0.739 37 H 0.238 0.762 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.141 0.859 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.634 -25.259 -10.926 30.282 hybrid contribution 0.430 0.706 -2.339 2.481 sum -12.204 -24.552 -13.265 30.458 Atomic orbital electron populations 1.23545 0.72659 1.05854 1.02521 1.86256 1.25746 1.29179 1.86519 1.18308 0.83302 0.82479 0.76013 1.91020 1.64999 1.36281 1.56333 1.44029 1.02038 1.07745 1.74681 1.22139 0.96411 0.83795 1.03709 1.17363 0.98619 0.86000 0.95385 1.21065 0.98361 0.92824 0.98169 1.20951 0.96872 0.98107 0.99015 1.17781 0.94775 0.84261 0.96521 1.42498 1.60982 1.19958 1.09156 1.16191 0.78785 0.81787 0.83686 1.90854 1.57019 1.65813 1.36190 1.45259 1.64819 1.14809 1.11518 1.18633 0.93451 0.90902 0.81269 0.95722 1.22424 0.97614 0.99760 1.01657 1.22216 1.21045 1.25063 0.96615 0.93913 1.26811 0.94569 0.92790 1.06461 1.70991 1.38154 1.18711 1.28247 0.83691 0.78514 0.75867 0.72376 1.20836 1.17183 1.19819 1.21132 1.01560 0.92183 0.99763 1.21077 0.97638 0.96654 0.96264 0.92510 0.91895 0.84093 0.90948 0.88710 0.88986 0.84614 0.82537 0.73887 0.76187 0.94472 0.92291 0.93091 0.93234 0.85875 0.84141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.57 10.56 113.37 1.20 1.77 16 2 O -0.36 -6.48 9.45 -55.58 -0.53 -7.00 16 3 C 0.64 15.30 8.26 129.79 1.07 16.37 16 4 O -0.60 -18.61 15.57 19.79 0.31 -18.30 16 5 N -0.55 -11.08 2.94 -783.68 -2.31 -13.39 16 6 C 0.08 0.90 10.26 127.77 1.31 2.21 16 7 C 0.12 2.75 4.94 38.11 0.19 2.94 16 8 C -0.08 -1.90 9.13 22.38 0.20 -1.69 16 9 C -0.13 -2.84 9.96 22.37 0.22 -2.62 16 10 C 0.16 4.46 6.27 38.11 0.24 4.70 16 11 N -0.68 -18.87 5.34 -317.05 -1.69 -20.56 16 12 C 0.70 26.34 8.37 179.05 1.50 27.84 16 13 O -0.62 -28.05 13.55 -3.97 -0.05 -28.10 16 14 N -0.71 -27.95 5.07 -461.39 -2.34 -30.29 16 15 C 0.26 12.44 2.14 44.25 0.09 12.53 16 16 H 0.02 1.28 6.22 -2.39 -0.01 1.26 16 17 C -0.16 -6.95 9.16 71.98 0.66 -6.29 16 18 C -0.61 -32.82 9.00 25.60 0.23 -32.59 16 19 H 0.04 2.41 7.96 -2.91 -0.02 2.38 16 20 C -0.01 -0.30 5.34 84.65 0.45 0.15 16 21 N -0.93 -55.45 13.70 21.45 0.29 -55.15 16 22 Si 1.07 49.99 26.43 68.60 1.81 51.80 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.25 -10.54 5.51 99.48 0.55 -9.99 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.13 -3.72 8.68 22.37 0.19 -3.53 16 27 C -0.10 -2.40 9.79 22.37 0.22 -2.18 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.14 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.82 7.46 -2.39 -0.02 0.80 16 33 H 0.09 0.81 8.05 -2.39 -0.02 0.80 16 34 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.42 8.52 8.84 -92.71 -0.82 7.70 16 37 H 0.40 13.66 8.54 -92.71 -0.79 12.87 16 38 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.06 2.64 4.80 -2.39 -0.01 2.63 16 40 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.26 15.46 8.73 -92.71 -0.81 14.65 16 42 H 0.12 4.28 6.35 -2.91 -0.02 4.27 16 43 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -75.80 363.61 2.52 -73.28 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -0.75 Total: 28.11 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 7.78 Total: 19.61 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -6.05 Total: -119.40 kcal Atomic # 8 Polarization: -53.13 SS G_CDS: -0.27 Total: -53.40 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 1.81 Total: 51.80 kcal Total: -75.80 2.52 -73.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158365706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.445 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds