Wall clock time and date at job start Tue Mar 31 2020 13:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.41600 * 113.99831 * 2 1 4 4 C 1.46496 * 120.00122 * 275.08222 * 3 2 1 5 5 C 1.34776 * 120.00055 * 95.08240 * 3 2 1 6 6 O 1.21592 * 120.00118 * 186.70179 * 5 3 2 7 7 C 1.47579 * 120.00080 * 6.69388 * 5 3 2 8 8 C 1.39759 * 120.07694 * 190.32814 * 7 5 3 9 9 C 1.37658 * 119.92426 * 180.02562 * 8 7 5 10 10 C 1.39138 * 120.07825 * 0.02562 * 9 8 7 11 11 N 1.39431 * 119.92599 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99814 * 143.72592 * 11 10 9 13 13 O 1.21579 * 120.00173 * 2.88757 * 12 11 10 14 14 N 1.34773 * 119.99713 * 182.89175 * 12 11 10 15 15 C 1.46500 * 119.99904 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.47159 * 35.00164 * 15 14 12 17 17 C 1.52995 * 109.47497 * 274.99764 * 15 14 12 18 18 C 1.50701 * 109.47346 * 154.99644 * 15 14 12 19 19 H 1.08002 * 119.99614 * 5.94252 * 18 15 14 20 20 C 1.37878 * 120.00399 * 185.93728 * 18 15 14 21 21 N 1.31510 * 119.99743 * 194.58200 * 20 18 15 22 22 Si 1.86799 * 119.99802 * 14.85945 * 20 18 15 23 23 H 1.48498 * 109.46873 * 179.72274 * 22 20 18 24 24 H 1.48503 * 109.47033 * 299.72642 * 22 20 18 25 25 H 1.48500 * 109.47171 * 59.72410 * 22 20 18 26 26 C 1.39139 * 120.14783 * 0.24999 * 10 9 8 27 27 C 1.37666 * 120.06997 * 359.49133 * 26 10 9 28 28 H 1.08998 * 109.47212 * 299.99700 * 1 2 3 29 29 H 1.08999 * 109.47407 * 60.00314 * 1 2 3 30 30 H 1.09001 * 109.46941 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47448 * 270.00132 * 4 3 2 32 32 H 1.09003 * 109.47520 * 29.99942 * 4 3 2 33 33 H 1.09002 * 109.47284 * 149.99838 * 4 3 2 34 34 H 1.08000 * 120.03325 * 0.02562 * 8 7 5 35 35 H 1.07997 * 119.96062 * 179.97438 * 9 8 7 36 36 H 0.96999 * 119.99869 * 323.71753 * 11 10 9 37 37 H 0.97000 * 120.00470 * 359.97438 * 14 12 11 38 38 H 1.09005 * 109.47045 * 55.55556 * 17 15 14 39 39 H 1.08993 * 109.47705 * 175.55781 * 17 15 14 40 40 H 1.09006 * 109.47187 * 295.56157 * 17 15 14 41 41 H 0.96997 * 120.00994 * 355.21716 * 21 20 18 42 42 H 1.07995 * 119.96465 * 179.74290 * 26 10 9 43 43 H 1.08003 * 120.03526 * 180.23424 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.2001 2.0085 -1.2637 5 6 2.3734 1.8672 1.1626 6 8 2.7539 3.0220 1.1771 7 6 2.3150 1.0938 2.4181 8 6 2.4863 1.7382 3.6464 9 6 2.4318 1.0136 4.8156 10 6 2.2070 -0.3589 4.7755 11 7 2.1529 -1.0898 5.9617 12 6 1.2916 -2.1197 6.0798 13 8 0.5993 -2.4448 5.1348 14 7 1.1978 -2.7892 7.2457 15 6 0.2612 -3.9084 7.3744 16 1 0.2060 -4.4466 6.4282 17 6 -1.1253 -3.3739 7.7388 18 6 0.7398 -4.8422 8.4562 19 1 1.5958 -4.5767 9.0588 20 6 0.0848 -6.0352 8.6766 21 7 0.3061 -6.7123 9.7821 22 14 -1.1112 -6.6936 7.4016 23 1 -1.6735 -7.9853 7.8709 24 1 -2.2122 -5.7166 7.2046 25 1 -0.3985 -6.9020 6.1155 26 6 2.0417 -1.0046 3.5541 27 6 2.0898 -0.2851 2.3815 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1837 1.7695 -1.6682 32 1 1.4315 1.7059 -1.9749 33 1 2.1304 3.0821 -1.0884 34 1 2.6613 2.8035 3.6781 35 1 2.5645 1.5109 5.7650 36 1 2.7352 -0.8571 6.7017 37 1 1.7503 -2.5302 7.9997 38 1 -1.4378 -2.6389 6.9970 39 1 -1.8390 -4.1975 7.7572 40 1 -1.0869 -2.9043 8.7218 41 1 0.9804 -6.4091 10.4099 42 1 1.8715 -2.0707 3.5263 43 1 1.9577 -0.7863 1.4339 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160057270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:04 Heat of formation + Delta-G solvation = -8.853286 kcal Electronic energy + Delta-G solvation = -26710.102288 eV Core-core repulsion = 22758.802266 eV Total energy + Delta-G solvation = -3951.300022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68955 -39.99683 -38.19881 -37.72957 -35.35426 -34.40037 -33.33813 -32.53844 -31.05701 -30.53518 -29.14944 -27.63467 -26.40094 -24.89623 -23.41820 -22.87122 -21.34442 -20.63008 -19.93827 -18.59495 -18.47687 -17.85498 -17.00961 -16.90876 -16.48137 -15.67601 -15.23162 -15.13227 -14.75283 -14.59346 -14.44009 -14.10117 -13.81378 -13.49435 -13.40858 -13.24104 -13.00677 -12.74600 -12.65763 -12.52280 -12.24073 -12.14876 -11.83814 -11.54642 -11.45483 -10.78537 -10.55248 -10.28202 -10.04638 -10.00696 -9.84424 -9.59911 -9.38898 -9.07999 -8.97046 -8.45685 -8.38504 -8.00189 -6.62932 -4.28042 0.75394 1.40909 1.50996 2.55427 2.96305 3.33200 3.40987 3.49775 3.56199 3.66668 3.90757 4.37152 4.63019 4.71845 4.84290 4.88260 4.92709 4.94714 4.99541 5.07480 5.14071 5.28289 5.34708 5.35243 5.47183 5.60291 5.99623 6.03192 6.13982 6.27072 6.34400 6.37019 6.47743 6.56261 6.61822 6.82843 7.01103 7.05739 7.06818 7.31364 7.37617 7.68430 7.75902 8.18214 8.49646 8.66615 8.98299 9.41806 10.78189 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.002672 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.052505 B =10475.232915 C =11348.605478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.138 6.138 3 N -0.483 5.483 4 C 0.084 3.916 5 C 0.580 3.420 6 O -0.528 6.528 7 C -0.179 4.179 8 C -0.036 4.036 9 C -0.171 4.171 10 C 0.213 3.787 11 N -0.695 5.695 12 C 0.693 3.307 13 O -0.581 6.581 14 N -0.711 5.711 15 C 0.257 3.743 16 H 0.043 0.957 17 C -0.167 4.167 18 C -0.616 4.616 19 H 0.061 0.939 20 C 0.038 3.962 21 N -0.898 5.898 22 Si 1.043 2.957 23 H -0.283 1.283 24 H -0.269 1.269 25 H -0.279 1.279 26 C -0.138 4.138 27 C -0.064 4.064 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.406 0.594 37 H 0.391 0.609 38 H 0.030 0.970 39 H 0.065 0.935 40 H 0.046 0.954 41 H 0.269 0.731 42 H 0.146 0.854 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.085 16.478 -17.380 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 O -0.141 6.141 3 N -0.263 5.263 4 C -0.056 4.056 5 C 0.373 3.627 6 O -0.406 6.406 7 C -0.183 4.183 8 C -0.055 4.055 9 C -0.192 4.192 10 C 0.115 3.885 11 N -0.342 5.342 12 C 0.394 3.606 13 O -0.459 6.459 14 N -0.361 5.361 15 C 0.154 3.846 16 H 0.061 0.939 17 C -0.226 4.226 18 C -0.654 4.654 19 H 0.080 0.920 20 C -0.168 4.168 21 N -0.532 5.532 22 Si 0.871 3.129 23 H -0.209 1.209 24 H -0.195 1.195 25 H -0.205 1.205 26 C -0.158 4.158 27 C -0.082 4.082 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.241 0.759 37 H 0.224 0.776 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.164 0.836 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.633 15.262 -18.434 23.987 hybrid contribution 1.351 1.433 1.174 2.293 sum 2.984 16.695 -17.259 24.197 Atomic orbital electron populations 1.23432 0.81097 1.04562 1.01697 1.90516 1.20720 1.07011 1.95886 1.49848 1.59108 1.10113 1.07201 1.21912 1.02263 0.97421 0.83998 1.18437 0.76227 0.85453 0.82608 1.90802 1.48340 1.16285 1.85147 1.19616 1.11696 0.94486 0.92481 1.20928 0.94383 0.99981 0.90246 1.20818 1.07722 0.91735 0.98913 1.17856 0.94812 0.89927 0.85883 1.42813 1.41812 1.33629 1.15906 1.16158 0.80311 0.79426 0.84740 1.90874 1.47709 1.68719 1.38617 1.45604 1.44252 1.34948 1.11323 1.18968 0.84978 0.82782 0.97890 0.93945 1.22602 0.99476 1.00728 0.99749 1.22091 1.18507 1.05223 1.19592 0.92041 1.25700 0.99326 0.93482 0.98322 1.70873 1.31041 1.43404 1.07839 0.84098 0.76689 0.76624 0.75492 1.20914 1.19507 1.20533 1.21411 1.02236 1.01916 0.90262 1.22278 0.93376 0.92755 0.99816 0.92334 0.92669 0.86939 0.91534 0.90571 0.89255 0.84784 0.85175 0.75868 0.77570 0.95134 0.91680 0.93497 0.92113 0.83628 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 11.06 101.05 1.12 1.04 16 2 O -0.14 -1.34 7.53 -11.47 -0.09 -1.43 16 3 N -0.48 -5.04 3.35 -68.13 -0.23 -5.27 16 4 C 0.08 0.62 10.84 59.84 0.65 1.27 16 5 C 0.58 7.41 7.68 -12.45 -0.10 7.32 16 6 O -0.53 -7.77 15.94 5.28 0.08 -7.68 16 7 C -0.18 -2.30 5.86 -104.95 -0.61 -2.91 16 8 C -0.04 -0.43 9.58 -39.22 -0.38 -0.81 16 9 C -0.17 -2.01 9.95 -39.46 -0.39 -2.40 16 10 C 0.21 2.98 6.26 -83.73 -0.52 2.45 16 11 N -0.69 -9.80 5.32 -14.22 -0.08 -9.87 16 12 C 0.69 12.87 8.34 -86.92 -0.73 12.14 16 13 O -0.58 -12.61 13.56 5.30 0.07 -12.54 16 14 N -0.71 -13.76 5.07 -59.82 -0.30 -14.07 16 15 C 0.26 5.99 2.14 -69.08 -0.15 5.85 16 16 H 0.04 1.07 6.26 -51.93 -0.33 0.75 16 17 C -0.17 -3.69 9.15 37.16 0.34 -3.35 16 18 C -0.62 -16.22 9.02 -34.44 -0.31 -16.53 16 19 H 0.06 1.69 7.96 -52.49 -0.42 1.27 16 20 C 0.04 1.05 5.37 -17.82 -0.10 0.96 16 21 N -0.90 -26.30 13.70 55.43 0.76 -25.55 16 22 Si 1.04 24.46 26.37 -169.99 -4.48 19.98 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.27 -5.85 5.38 56.52 0.30 -5.54 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.14 -2.03 8.65 -39.46 -0.34 -2.37 16 27 C -0.06 -0.82 8.81 -39.22 -0.35 -1.17 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.68 7.34 -51.93 -0.38 0.30 16 34 H 0.13 1.47 7.68 -52.49 -0.40 1.07 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 36 H 0.41 4.35 8.83 -40.82 -0.36 3.99 16 37 H 0.39 6.61 8.54 -40.82 -0.35 6.26 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 1.46 4.56 -51.93 -0.24 1.22 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.27 7.78 8.73 -40.82 -0.36 7.43 16 42 H 0.15 2.42 6.37 -52.49 -0.33 2.09 16 43 H 0.16 1.88 4.61 -54.05 -0.25 1.63 16 LS Contribution 359.06 15.07 5.41 5.41 Total: -1.00 -33.14 359.06 -6.40 -39.54 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.69 Total: 10.00 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -1.86 Total: 1.49 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: 0.15 Total: -54.76 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.07 Total: -21.66 kcal Atomic # 14 Polarization: 24.46 SS G_CDS: -4.48 Total: 19.98 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.14 -6.40 -39.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160057270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.687 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds