Wall clock time and date at job start Tue Mar 31 2020 13:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46694 * 2 1 4 4 C 1.50695 * 109.47197 * 119.99997 * 2 1 3 5 5 H 1.08002 * 120.00549 * 120.00319 * 4 2 1 6 6 C 1.37881 * 120.00004 * 300.00460 * 4 2 1 7 7 N 1.31509 * 119.99897 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99755 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46882 * 180.02562 * 8 6 4 10 10 H 1.48493 * 109.47259 * 299.99950 * 8 6 4 11 11 H 1.48497 * 109.47132 * 60.00420 * 8 6 4 12 12 N 1.46896 * 109.47304 * 240.00253 * 2 1 3 13 13 C 1.46900 * 110.99942 * 183.95197 * 12 2 1 14 14 C 1.46904 * 111.00027 * 59.99762 * 12 2 1 15 15 C 1.50697 * 109.46790 * 189.99772 * 14 12 2 16 16 O 1.21283 * 120.00538 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99730 * 180.02562 * 15 14 12 18 18 C 1.46503 * 120.00229 * 354.71816 * 17 15 14 19 19 C 1.39924 * 120.00215 * 174.72811 * 17 15 14 20 20 C 1.38874 * 120.06587 * 246.89532 * 19 17 15 21 21 C 1.38115 * 119.92856 * 179.76636 * 20 19 17 22 22 C 1.38289 * 120.06842 * 0.50877 * 21 20 19 23 23 N 1.48021 * 119.92923 * 179.72531 * 22 21 20 24 24 O 1.21792 * 119.99661 * 180.02562 * 23 22 21 25 25 O 1.21800 * 119.99781 * 0.02562 * 23 22 21 26 26 C 1.38280 * 120.13910 * 359.73854 * 22 21 20 27 27 C 1.38115 * 120.07331 * 0.02562 * 26 22 21 28 28 H 1.09006 * 109.46506 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47640 * 299.99723 * 1 2 3 30 30 H 1.08999 * 109.47275 * 60.00041 * 1 2 3 31 31 H 0.97005 * 119.99958 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47245 * 59.99876 * 13 12 2 33 33 H 1.09000 * 109.47439 * 180.02562 * 13 12 2 34 34 H 1.09002 * 109.47353 * 299.99868 * 13 12 2 35 35 H 1.08990 * 109.47243 * 309.99962 * 14 12 2 36 36 H 1.09004 * 109.46937 * 70.00023 * 14 12 2 37 37 H 1.09008 * 109.46883 * 90.00125 * 18 17 15 38 38 H 1.08995 * 109.47628 * 210.00459 * 18 17 15 39 39 H 1.09004 * 109.46799 * 330.00706 * 18 17 15 40 40 H 1.07997 * 120.04059 * 359.97438 * 20 19 17 41 41 H 1.07998 * 119.96888 * 180.22984 * 21 20 19 42 42 H 1.08005 * 119.96160 * 180.02562 * 26 22 21 43 43 H 1.07997 * 120.03698 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9426 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8258 -0.4207 5.2205 10 1 1.8259 -2.5203 4.0076 11 1 3.8063 -1.1208 4.0082 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.8581 -0.8910 -3.6158 16 8 2.4165 -1.9570 -3.4647 17 7 1.5152 -0.4792 -4.8525 18 6 0.7401 0.7518 -5.0262 19 6 1.8993 -1.2276 -5.9707 20 6 2.8151 -0.7066 -6.8754 21 6 3.1959 -1.4498 -7.9756 22 6 2.6584 -2.7070 -8.1823 23 7 3.0641 -3.4982 -9.3657 24 8 2.5911 -4.6055 -9.5491 25 8 3.8710 -3.0420 -10.1558 26 6 1.7424 -3.2264 -7.2860 27 6 1.3612 -2.4903 -6.1813 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7085 1.1611 3.4844 32 1 3.8030 -1.3530 -0.3066 33 1 3.8211 -1.3107 -2.0862 34 1 3.9187 0.2053 -1.1591 35 1 0.4723 0.1324 -2.3564 36 1 2.0519 0.9347 -2.5280 37 1 1.4200 1.5974 -5.1311 38 1 0.1223 0.6691 -5.9203 39 1 0.1016 0.9048 -4.1561 40 1 3.2317 0.2771 -6.7172 41 1 3.9109 -1.0468 -8.6776 42 1 1.3247 -4.2088 -7.4500 43 1 0.6454 -2.8964 -5.4818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161764655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:20 Heat of formation + Delta-G solvation = 18.967828 kcal Electronic energy + Delta-G solvation = -26737.915897 eV Core-core repulsion = 22787.822288 eV Total energy + Delta-G solvation = -3950.093608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.40314 -40.90134 -39.06614 -36.78179 -36.75944 -35.75427 -32.87327 -31.84238 -31.70109 -29.37308 -28.36465 -27.47760 -26.09497 -24.87587 -23.75918 -23.56809 -22.52202 -20.31490 -19.64419 -19.19751 -18.88247 -17.74520 -17.60898 -17.04163 -16.46894 -16.14977 -15.38857 -15.29973 -14.72850 -14.48216 -14.25745 -14.02505 -13.80881 -13.56802 -13.41401 -13.23307 -12.84723 -12.65746 -12.37173 -12.07943 -11.81135 -11.75747 -11.43302 -11.35701 -11.22622 -11.06666 -10.92283 -10.76119 -10.29045 -10.25246 -10.13846 -10.04176 -9.80470 -9.52858 -9.03185 -9.00137 -8.50091 -7.33391 -6.09816 -4.13854 -0.47875 0.57308 1.02641 1.15573 2.47364 2.52928 2.87758 3.28594 3.32549 3.36486 4.01642 4.10588 4.33165 4.41483 4.50899 4.62301 4.72256 4.85928 4.89421 5.05589 5.10564 5.23114 5.24858 5.31500 5.36218 5.55478 5.64030 5.71794 5.74808 6.08529 6.18449 6.31390 6.40873 6.63640 6.75027 6.88307 6.93428 7.00910 7.35297 7.41280 7.54794 7.74542 8.01564 8.11419 8.18892 8.45553 8.92049 9.51440 10.97243 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028231 B = 0.002423 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.563309 B =11552.019320 C =11982.521456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.213 3.787 3 H 0.001 0.999 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.521 5.521 13 C 0.034 3.966 14 C 0.037 3.963 15 C 0.519 3.481 16 O -0.496 6.496 17 N -0.596 5.596 18 C 0.078 3.922 19 C 0.209 3.791 20 C -0.125 4.125 21 C -0.043 4.043 22 C -0.054 4.054 23 N 0.032 4.968 24 O -0.162 6.162 25 O -0.164 6.164 26 C -0.041 4.041 27 C -0.106 4.106 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.006 0.994 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.007 0.993 35 H 0.108 0.892 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 1.472 -19.982 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.108 3.892 3 H 0.018 0.982 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.246 5.246 13 C -0.114 4.114 14 C -0.094 4.094 15 C 0.309 3.691 16 O -0.367 6.367 17 N -0.329 5.329 18 C -0.064 4.064 19 C 0.117 3.883 20 C -0.145 4.145 21 C -0.063 4.063 22 C -0.137 4.137 23 N 0.550 4.450 24 O -0.378 6.378 25 O -0.380 6.380 26 C -0.061 4.061 27 C -0.126 4.126 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.025 0.975 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.167 0.833 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.110 0.929 -19.075 19.129 hybrid contribution 0.661 0.328 0.530 0.909 sum -0.449 1.257 -18.545 18.593 Atomic orbital electron populations 1.21900 0.97677 0.99878 0.99859 1.19311 0.92327 0.92017 0.85536 0.98191 1.21085 1.31228 1.12424 0.89510 0.91730 1.24917 0.95125 0.95068 0.99048 1.69863 1.36827 1.23017 1.23667 0.86546 0.79132 0.79806 0.81869 1.21322 1.20143 1.20290 1.61918 1.10422 1.51828 1.00454 1.22340 0.87689 0.98807 1.02607 1.22052 1.03092 0.94447 0.89810 1.21443 0.77505 0.87250 0.82899 1.90706 1.39378 1.22210 1.84367 1.45878 1.56559 1.26222 1.04277 1.21966 0.95621 0.84863 1.03902 1.18010 0.91778 0.91328 0.87179 1.21284 0.97167 1.01795 0.94244 1.20885 0.97326 0.90808 0.97283 1.21133 1.06503 0.95067 0.91044 1.43595 0.98933 1.00841 1.01599 1.94543 1.56889 1.05819 1.80539 1.94532 1.28325 1.74037 1.41065 1.20949 0.93071 1.00738 0.91311 1.21381 1.00441 0.94159 0.96661 0.94426 0.89298 0.97556 0.92850 0.90383 0.92301 0.97454 0.87461 0.92690 0.91753 0.90682 0.89395 0.83291 0.82606 0.82554 0.83215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.76 37.16 0.33 -2.72 16 2 C 0.21 5.11 2.06 -68.87 -0.14 4.96 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 4 C -0.50 -13.43 7.93 -34.44 -0.27 -13.71 16 5 H 0.06 1.75 6.39 -52.49 -0.34 1.41 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.51 11.32 55.43 0.63 -23.89 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 N -0.52 -10.90 4.36 -237.73 -1.04 -11.94 16 13 C 0.03 0.68 8.88 60.06 0.53 1.22 16 14 C 0.04 0.60 3.94 -4.98 -0.02 0.58 16 15 C 0.52 7.71 7.25 -10.99 -0.08 7.63 16 16 O -0.50 -9.19 13.89 5.56 0.08 -9.12 16 17 N -0.60 -6.30 2.93 -120.82 -0.35 -6.66 16 18 C 0.08 0.53 10.10 59.85 0.60 1.13 16 19 C 0.21 2.11 4.83 -83.70 -0.40 1.71 16 20 C -0.12 -1.03 9.85 -39.39 -0.39 -1.42 16 21 C -0.04 -0.37 9.55 -39.61 -0.38 -0.75 16 22 C -0.05 -0.56 6.85 -79.91 -0.55 -1.11 16 23 N 0.03 0.39 4.45 33.98 0.15 0.54 16 24 O -0.16 -2.11 18.44 -29.46 -0.54 -2.65 16 25 O -0.16 -2.08 18.44 -29.46 -0.54 -2.63 16 26 C -0.04 -0.39 9.55 -39.61 -0.38 -0.77 16 27 C -0.11 -1.07 9.31 -39.39 -0.37 -1.43 16 28 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 30 H 0.01 0.11 6.20 -51.93 -0.32 -0.21 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.08 1.70 6.23 -51.93 -0.32 1.37 16 33 H 0.06 1.14 5.82 -51.93 -0.30 0.84 16 34 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.11 1.58 4.93 -51.93 -0.26 1.32 16 36 H 0.06 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 38 H 0.07 0.37 8.05 -51.93 -0.42 -0.05 16 39 H 0.09 0.58 6.48 -51.93 -0.34 0.24 16 40 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 41 H 0.16 1.05 7.60 -52.49 -0.40 0.66 16 42 H 0.16 1.28 7.60 -52.48 -0.40 0.88 16 43 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 359.35 15.07 5.42 5.42 Total: -1.00 -31.60 359.35 -8.34 -39.94 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.50 Total: -1.77 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.61 Total: -3.18 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -0.61 Total: -41.94 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.01 Total: -14.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.60 -8.34 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161764655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.908 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds