Wall clock time and date at job start Tue Mar 31 2020 13:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46694 * 2 1 4 4 C 1.50695 * 109.47197 * 119.99997 * 2 1 3 5 5 H 1.08002 * 120.00549 * 120.00319 * 4 2 1 6 6 C 1.37881 * 120.00004 * 300.00460 * 4 2 1 7 7 N 1.31509 * 119.99897 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99755 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46882 * 180.02562 * 8 6 4 10 10 H 1.48493 * 109.47259 * 299.99950 * 8 6 4 11 11 H 1.48497 * 109.47132 * 60.00420 * 8 6 4 12 12 N 1.46896 * 109.47304 * 240.00253 * 2 1 3 13 13 C 1.46900 * 110.99942 * 183.95197 * 12 2 1 14 14 C 1.46904 * 111.00027 * 59.99762 * 12 2 1 15 15 C 1.50697 * 109.46790 * 189.99772 * 14 12 2 16 16 O 1.21283 * 120.00538 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99730 * 180.02562 * 15 14 12 18 18 C 1.46503 * 120.00229 * 354.71816 * 17 15 14 19 19 C 1.39924 * 120.00215 * 174.72811 * 17 15 14 20 20 C 1.38874 * 120.06587 * 246.89532 * 19 17 15 21 21 C 1.38115 * 119.92856 * 179.76636 * 20 19 17 22 22 C 1.38289 * 120.06842 * 0.50877 * 21 20 19 23 23 N 1.48021 * 119.92923 * 179.72531 * 22 21 20 24 24 O 1.21792 * 119.99661 * 180.02562 * 23 22 21 25 25 O 1.21800 * 119.99781 * 0.02562 * 23 22 21 26 26 C 1.38280 * 120.13910 * 359.73854 * 22 21 20 27 27 C 1.38115 * 120.07331 * 0.02562 * 26 22 21 28 28 H 1.09006 * 109.46506 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47640 * 299.99723 * 1 2 3 30 30 H 1.08999 * 109.47275 * 60.00041 * 1 2 3 31 31 H 0.97005 * 119.99958 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47245 * 59.99876 * 13 12 2 33 33 H 1.09000 * 109.47439 * 180.02562 * 13 12 2 34 34 H 1.09002 * 109.47353 * 299.99868 * 13 12 2 35 35 H 1.08990 * 109.47243 * 309.99962 * 14 12 2 36 36 H 1.09004 * 109.46937 * 70.00023 * 14 12 2 37 37 H 1.09008 * 109.46883 * 90.00125 * 18 17 15 38 38 H 1.08995 * 109.47628 * 210.00459 * 18 17 15 39 39 H 1.09004 * 109.46799 * 330.00706 * 18 17 15 40 40 H 1.07997 * 120.04059 * 359.97438 * 20 19 17 41 41 H 1.07998 * 119.96888 * 180.22984 * 21 20 19 42 42 H 1.08005 * 119.96160 * 180.02562 * 26 22 21 43 43 H 1.07997 * 120.03698 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9426 0.8295 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 1.8258 -0.4207 5.2205 10 1 1.8259 -2.5203 4.0076 11 1 3.8063 -1.1208 4.0082 12 7 2.0197 -0.6924 -1.1994 13 6 3.4851 -0.7944 -1.1870 14 6 1.5487 -0.0263 -2.4211 15 6 1.8581 -0.8910 -3.6158 16 8 2.4165 -1.9570 -3.4647 17 7 1.5152 -0.4792 -4.8525 18 6 0.7401 0.7518 -5.0262 19 6 1.8993 -1.2276 -5.9707 20 6 2.8151 -0.7066 -6.8754 21 6 3.1959 -1.4498 -7.9756 22 6 2.6584 -2.7070 -8.1823 23 7 3.0641 -3.4982 -9.3657 24 8 2.5911 -4.6055 -9.5491 25 8 3.8710 -3.0420 -10.1558 26 6 1.7424 -3.2264 -7.2860 27 6 1.3612 -2.4903 -6.1813 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.7085 1.1611 3.4844 32 1 3.8030 -1.3530 -0.3066 33 1 3.8211 -1.3107 -2.0862 34 1 3.9187 0.2053 -1.1591 35 1 0.4723 0.1324 -2.3564 36 1 2.0519 0.9347 -2.5280 37 1 1.4200 1.5974 -5.1311 38 1 0.1223 0.6691 -5.9203 39 1 0.1016 0.9048 -4.1561 40 1 3.2317 0.2771 -6.7172 41 1 3.9109 -1.0468 -8.6776 42 1 1.3247 -4.2088 -7.4500 43 1 0.6454 -2.8964 -5.4818 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161764655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:19 Heat of formation + Delta-G solvation = 0.370348 kcal Electronic energy + Delta-G solvation = -26738.722344 eV Core-core repulsion = 22787.822288 eV Total energy + Delta-G solvation = -3950.900056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.30112 -41.84811 -40.06483 -38.27083 -37.72100 -36.77608 -34.76702 -32.60533 -32.53095 -31.16647 -29.71775 -28.20298 -27.30584 -26.51343 -25.28258 -24.29607 -23.54627 -21.72249 -20.55456 -20.42335 -19.80067 -18.71513 -18.64477 -18.37062 -17.83458 -17.26873 -16.82293 -16.19047 -16.03402 -15.71522 -15.41763 -15.30912 -14.91202 -14.64469 -14.34949 -14.22763 -14.07056 -13.92937 -13.45142 -13.32634 -12.92944 -12.84293 -12.79226 -12.70525 -12.65210 -12.52108 -12.36729 -12.33511 -12.11017 -11.98407 -11.93109 -11.02646 -10.93763 -10.72548 -10.51077 -10.48819 -9.87404 -8.97008 -8.12827 -6.22783 -1.34443 -0.11960 0.15321 0.31199 1.41718 1.42289 1.43416 1.50502 1.59144 2.13830 2.42049 3.15613 3.29791 3.32387 3.41765 3.57014 3.74752 3.84147 4.02304 4.20639 4.25737 4.36929 4.45685 4.53676 4.58184 4.61872 4.64943 4.67775 4.89328 4.91010 4.97808 5.01449 5.02424 5.09105 5.21524 5.24632 5.48442 5.59053 5.70380 5.76247 5.98424 6.26483 6.32476 6.44345 6.66099 6.88983 7.02616 7.45834 8.92615 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028231 B = 0.002423 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.563309 B =11552.019320 C =11982.521456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.219 3.781 3 H -0.024 1.024 4 C -0.523 4.523 5 H 0.052 0.948 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.953 3.047 9 H -0.281 1.281 10 H -0.276 1.276 11 H -0.274 1.274 12 N -0.538 5.538 13 C 0.044 3.956 14 C 0.037 3.963 15 C 0.524 3.476 16 O -0.541 6.541 17 N -0.583 5.583 18 C 0.067 3.933 19 C 0.196 3.804 20 C -0.112 4.112 21 C -0.035 4.035 22 C -0.066 4.066 23 N 0.033 4.967 24 O -0.189 6.189 25 O -0.168 6.168 26 C -0.041 4.041 27 C -0.114 4.114 28 H 0.026 0.974 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.263 0.737 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.177 0.823 41 H 0.177 0.823 42 H 0.164 0.836 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.979 2.766 -21.141 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.113 3.887 3 H -0.006 1.006 4 C -0.561 4.561 5 H 0.070 0.930 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.780 3.220 9 H -0.207 1.207 10 H -0.202 1.202 11 H -0.200 1.200 12 N -0.263 5.263 13 C -0.104 4.104 14 C -0.094 4.094 15 C 0.315 3.685 16 O -0.416 6.416 17 N -0.314 5.314 18 C -0.073 4.073 19 C 0.104 3.896 20 C -0.132 4.132 21 C -0.055 4.055 22 C -0.149 4.149 23 N 0.548 4.452 24 O -0.399 6.399 25 O -0.385 6.385 26 C -0.060 4.060 27 C -0.134 4.134 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.030 0.970 35 H 0.139 0.861 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.195 0.805 41 H 0.194 0.806 42 H 0.181 0.819 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.183 2.221 -20.286 20.441 hybrid contribution 0.662 0.000 0.806 1.043 sum -0.521 2.220 -19.480 19.613 Atomic orbital electron populations 1.21707 0.96696 0.99303 1.00496 1.19089 0.92992 0.90453 0.86185 1.00604 1.21370 1.31277 1.12292 0.91190 0.93006 1.25580 0.95376 0.95761 1.01476 1.69962 1.37441 1.23857 1.24166 0.85683 0.78669 0.78698 0.78999 1.20657 1.20160 1.19974 1.61750 1.10622 1.52552 1.01394 1.22193 0.87712 0.98687 1.01821 1.22103 1.03887 0.95099 0.88268 1.21110 0.77187 0.86361 0.83891 1.90693 1.41807 1.23890 1.85252 1.45712 1.55738 1.26964 1.03024 1.22322 0.96123 0.83675 1.05172 1.18212 0.92583 0.91438 0.87356 1.21494 0.95956 1.02641 0.93092 1.21161 0.96980 0.89861 0.97497 1.21312 1.07365 0.95694 0.90541 1.43853 0.98605 1.00804 1.01963 1.94540 1.57589 1.06629 1.81192 1.94509 1.28406 1.73922 1.41617 1.21016 0.92915 1.01092 0.91023 1.21389 1.00836 0.94453 0.96751 0.95439 0.91812 0.93751 0.92811 0.92793 0.91433 0.97029 0.86130 0.90695 0.89533 0.88463 0.89122 0.80523 0.80566 0.81860 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.52 8.76 71.98 0.63 -4.89 16 2 C 0.22 10.49 2.06 44.17 0.09 10.58 16 3 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 4 C -0.52 -28.26 7.93 25.60 0.20 -28.06 16 5 H 0.05 2.87 6.39 -2.91 -0.02 2.85 16 6 C 0.02 0.93 5.30 84.66 0.45 1.38 16 7 N -0.91 -50.37 11.32 21.45 0.24 -50.13 16 8 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 12 N -0.54 -22.26 4.36 -906.05 -3.95 -26.21 16 13 C 0.04 1.79 8.88 127.69 1.13 2.92 16 14 C 0.04 1.11 3.94 85.56 0.34 1.45 16 15 C 0.52 14.60 7.25 87.66 0.64 15.23 16 16 O -0.54 -19.67 13.89 -3.04 -0.04 -19.72 16 17 N -0.58 -10.68 2.93 -654.56 -1.92 -12.60 16 18 C 0.07 0.64 10.10 127.77 1.29 1.93 16 19 C 0.20 3.47 4.83 38.15 0.18 3.65 16 20 C -0.11 -1.46 9.85 22.39 0.22 -1.24 16 21 C -0.04 -0.51 9.55 22.25 0.21 -0.29 16 22 C -0.07 -1.26 6.85 36.40 0.25 -1.01 16 23 N 0.03 0.77 4.45 -46.41 -0.21 0.57 16 24 O -0.19 -4.90 18.44 18.90 0.35 -4.56 16 25 O -0.17 -4.07 18.44 18.89 0.35 -3.72 16 26 C -0.04 -0.74 9.55 22.25 0.21 -0.53 16 27 C -0.11 -2.15 9.31 22.39 0.21 -1.94 16 28 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 30 H 0.04 1.58 6.20 -2.39 -0.01 1.57 16 31 H 0.26 13.82 8.31 -92.70 -0.77 13.05 16 32 H 0.05 2.40 6.23 -2.39 -0.01 2.38 16 33 H 0.07 2.61 5.82 -2.39 -0.01 2.60 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.12 3.22 4.93 -2.39 -0.01 3.21 16 36 H 0.08 1.97 8.12 -2.38 -0.02 1.95 16 37 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.10 0.56 8.05 -2.39 -0.02 0.54 16 39 H 0.09 0.86 6.48 -2.38 -0.02 0.85 16 40 H 0.18 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.18 1.79 7.60 -2.91 -0.02 1.77 16 42 H 0.16 2.63 7.60 -2.91 -0.02 2.60 16 43 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -69.26 359.35 3.95 -65.31 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 1.04 Total: 6.70 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.06 Total: -0.81 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -5.83 Total: -88.38 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: 0.65 Total: -28.00 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -69.26 3.95 -65.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161764655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.680 kcal (2) G-P(sol) polarization free energy of solvation -69.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds