Wall clock time and date at job start Tue Mar 31 2020 12:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47116 * 2 1 4 4 C 1.52997 * 109.47345 * 120.00378 * 2 1 3 5 5 C 1.53004 * 109.47157 * 295.00254 * 4 2 1 6 6 C 1.50692 * 109.47248 * 179.97438 * 5 4 2 7 7 C 1.38224 * 120.01694 * 99.99598 * 6 5 4 8 8 C 1.38223 * 120.03001 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.04756 * 0.02562 * 8 7 6 10 10 C 1.38177 * 120.02946 * 359.97438 * 9 8 7 11 11 C 1.38439 * 120.01394 * 279.97582 * 6 5 4 12 12 F 1.35096 * 120.02208 * 0.04426 * 11 6 5 13 13 C 1.50699 * 109.47294 * 240.00472 * 2 1 3 14 14 O 1.21285 * 120.00006 * 264.03301 * 13 2 1 15 15 N 1.34783 * 120.00281 * 84.02696 * 13 2 1 16 16 C 1.47062 * 136.05769 * 183.31780 * 15 13 2 17 17 C 1.53240 * 88.08190 * 207.20406 * 16 15 13 18 18 O 1.42905 * 114.19838 * 87.72767 * 17 16 15 19 19 C 1.50701 * 114.32836 * 220.46959 * 17 16 15 20 20 H 1.08004 * 119.99802 * 93.75988 * 19 17 16 21 21 C 1.37873 * 119.99972 * 273.76145 * 19 17 16 22 22 N 1.31515 * 119.99998 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00090 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47491 * 89.99503 * 23 21 19 25 25 H 1.48497 * 109.47572 * 209.99880 * 23 21 19 26 26 H 1.48507 * 109.46895 * 329.99569 * 23 21 19 27 27 C 1.47063 * 136.05216 * 3.69247 * 15 13 2 28 28 H 1.09005 * 109.47086 * 186.22093 * 1 2 3 29 29 H 1.09000 * 109.47383 * 306.22183 * 1 2 3 30 30 H 1.09004 * 109.47157 * 66.21650 * 1 2 3 31 31 H 1.09003 * 109.47206 * 175.00171 * 4 2 1 32 32 H 1.09001 * 109.47263 * 54.99932 * 4 2 1 33 33 H 1.08994 * 109.47236 * 59.99282 * 5 4 2 34 34 H 1.09007 * 109.46766 * 299.99537 * 5 4 2 35 35 H 1.08008 * 119.98421 * 0.25629 * 7 6 5 36 36 H 1.07994 * 119.97443 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.98346 * 179.97438 * 9 8 7 38 38 H 1.07996 * 120.01074 * 180.02562 * 10 9 8 39 39 H 1.09003 * 113.46793 * 321.93664 * 16 15 13 40 40 H 1.08993 * 113.47138 * 92.37874 * 16 15 13 41 41 H 0.96701 * 113.99915 * 86.29951 * 18 17 16 42 42 H 0.97001 * 119.99803 * 180.02562 * 22 21 19 43 43 H 1.09001 * 113.46415 * 267.61723 * 27 15 13 44 44 H 1.08997 * 113.47203 * 37.99887 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 0.0688 2.4953 6 6 2.1370 -0.6420 3.7257 7 6 3.2918 -0.2106 4.3508 8 6 3.7521 -0.8620 5.4797 9 6 3.0583 -1.9461 5.9847 10 6 1.9035 -2.3793 5.3615 11 6 1.4413 -1.7271 4.2307 12 9 0.3127 -2.1500 3.6203 13 6 2.0323 -0.7103 -1.2305 14 8 2.3374 -1.8827 -1.1719 15 7 2.1425 -0.0428 -2.3962 16 6 2.5177 -0.3793 -3.7778 17 6 2.9735 1.0732 -3.9532 18 8 4.3286 1.3125 -3.5675 19 6 2.6179 1.6787 -5.2866 20 1 1.7051 2.2456 -5.3960 21 6 3.4577 1.5090 -6.3667 22 7 4.5694 0.8192 -6.2333 23 14 3.0173 2.2602 -8.0193 24 1 3.5859 3.6292 -8.1082 25 1 3.5758 1.4206 -9.1094 26 1 1.5399 2.3281 -8.1542 27 6 1.9466 1.3440 -2.8449 28 1 -0.3633 -1.0217 0.1114 29 1 -0.3634 0.6073 0.8290 30 1 -0.3634 0.4145 -0.9404 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7199 1.2950 33 1 0.5489 0.1470 2.5389 34 1 2.0699 1.0674 2.4495 35 1 3.8324 0.6388 3.9596 36 1 4.6547 -0.5244 5.9671 37 1 3.4190 -2.4546 6.8666 38 1 1.3616 -3.2258 5.7565 39 1 3.3333 -1.0996 -3.8429 40 1 1.6678 -0.6464 -4.4057 41 1 4.9730 1.1409 -4.2679 42 1 5.1605 0.7001 -6.9932 43 1 0.9429 1.5406 -3.2218 44 1 2.2765 2.0861 -2.1180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186813120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:13 Heat of formation + Delta-G solvation = -85.091017 kcal Electronic energy + Delta-G solvation = -26632.739457 eV Core-core repulsion = 22658.213557 eV Total energy + Delta-G solvation = -3974.525900 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.00223 -39.78772 -39.27121 -37.73186 -35.42260 -34.00109 -32.41833 -32.18113 -30.74226 -28.95973 -28.04024 -25.72164 -25.12538 -24.86822 -22.98377 -22.28761 -20.91242 -19.75631 -18.17490 -17.74067 -17.36898 -16.65159 -16.45190 -16.03325 -15.67088 -15.37213 -14.96460 -14.92838 -14.42479 -14.35231 -14.16094 -13.59675 -13.45328 -13.20120 -13.05556 -12.84041 -12.68476 -12.59210 -12.08900 -12.01570 -11.91352 -11.57098 -11.54311 -11.53251 -11.26718 -11.08761 -10.88641 -10.70770 -10.61083 -10.45929 -10.25343 -9.68353 -9.19327 -9.01994 -8.81592 -8.72944 -8.38286 -7.81048 -6.39290 -4.50277 0.94203 0.97967 3.14565 3.22345 3.23963 3.25887 3.34508 3.60863 4.08790 4.17815 4.42318 4.52269 4.69565 4.82639 4.84277 4.93202 5.00226 5.12217 5.13860 5.34843 5.44270 5.48613 5.53752 5.62222 5.71415 5.84083 5.84695 5.89914 5.93365 5.97791 6.00249 6.13333 6.19143 6.26306 6.28138 6.36409 6.40657 6.47952 6.68289 6.75392 6.83780 7.11847 7.63450 7.80124 8.51667 8.57627 8.83200 9.21002 9.48868 10.67398 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.002395 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.963732 B =11687.326587 C =12022.443239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 H 0.089 0.911 4 C -0.093 4.093 5 C -0.082 4.082 6 C -0.109 4.109 7 C -0.089 4.089 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.155 4.155 11 C 0.100 3.900 12 F -0.136 7.136 13 C 0.538 3.462 14 O -0.562 6.562 15 N -0.634 5.634 16 C 0.078 3.922 17 C 0.240 3.760 18 O -0.573 6.573 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.071 3.929 22 N -0.897 5.897 23 Si 0.909 3.091 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.101 3.899 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.395 0.605 42 H 0.274 0.726 43 H 0.085 0.915 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.881 -0.312 19.831 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.107 0.893 4 C -0.131 4.131 5 C -0.119 4.119 6 C -0.110 4.110 7 C -0.107 4.107 8 C -0.148 4.148 9 C -0.118 4.118 10 C -0.173 4.173 11 C 0.081 3.919 12 F -0.115 7.115 13 C 0.328 3.672 14 O -0.442 6.442 15 N -0.367 5.367 16 C -0.045 4.045 17 C 0.198 3.802 18 O -0.386 6.386 19 C -0.573 4.573 20 H 0.091 0.909 21 C -0.132 4.132 22 N -0.537 5.537 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.022 4.022 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.151 0.849 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.251 0.749 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.892 -0.975 20.478 21.077 hybrid contribution -0.115 0.009 -1.526 1.531 sum -5.007 -0.966 18.952 19.626 Atomic orbital electron populations 1.21729 0.92987 1.02633 1.02285 1.21186 0.97463 1.00685 0.93100 0.89269 1.21372 1.01648 0.99275 0.90828 1.20661 1.01712 0.98753 0.90816 1.20023 0.96368 0.96269 0.98353 1.21031 0.94709 0.99913 0.95088 1.21213 1.00377 0.96383 0.96784 1.20989 0.94367 0.96647 0.99756 1.21150 0.98628 1.01582 0.95979 1.17600 0.84891 0.95753 0.93635 1.91501 1.48434 1.89181 1.82336 1.19995 0.77733 0.86301 0.83219 1.90635 1.51796 1.16660 1.85068 1.49759 1.65697 1.12955 1.08310 1.24079 0.98984 1.03011 0.78400 1.19492 0.81151 0.89059 0.90526 1.86005 1.16840 1.90638 1.45146 1.21416 1.07846 1.34752 0.93274 0.90947 1.25096 0.94528 0.93745 0.99791 1.69271 1.12048 1.39749 1.32623 0.86309 0.78936 0.79118 0.82013 1.20239 1.20911 1.19546 1.23376 0.99990 0.82599 0.96197 0.92057 0.91634 0.92140 0.91322 0.90767 0.90251 0.90255 0.84912 0.85387 0.85228 0.84904 0.91899 0.90423 0.74864 0.91541 0.89668 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.77 37.15 0.33 -1.46 16 2 C -0.10 -1.56 2.56 -91.78 -0.24 -1.80 16 3 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 4 C -0.09 -1.32 4.09 -26.73 -0.11 -1.43 16 5 C -0.08 -0.90 4.83 -27.89 -0.13 -1.04 16 6 C -0.11 -1.21 5.14 -104.56 -0.54 -1.75 16 7 C -0.09 -0.85 9.67 -39.59 -0.38 -1.23 16 8 C -0.13 -1.06 10.04 -39.58 -0.40 -1.46 16 9 C -0.10 -0.80 10.04 -39.59 -0.40 -1.20 16 10 C -0.15 -1.47 10.03 -39.51 -0.40 -1.87 16 11 C 0.10 1.16 7.24 -39.42 -0.29 0.88 16 12 F -0.14 -1.75 16.66 2.25 0.04 -1.71 16 13 C 0.54 11.05 7.20 -10.98 -0.08 10.97 16 14 O -0.56 -13.49 16.96 5.55 0.09 -13.39 16 15 N -0.63 -13.52 3.69 -185.38 -0.68 -14.20 16 16 C 0.08 1.83 8.02 -8.64 -0.07 1.76 16 17 C 0.24 5.74 1.57 -91.39 -0.14 5.60 16 18 O -0.57 -14.81 13.54 -35.23 -0.48 -15.29 16 19 C -0.53 -13.28 8.69 -34.44 -0.30 -13.58 16 20 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 21 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 22 N -0.90 -23.16 11.01 55.43 0.61 -22.55 16 23 Si 0.91 19.41 29.54 -169.99 -5.02 14.38 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 C 0.10 2.02 7.77 -8.50 -0.07 1.96 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.67 6.88 -51.93 -0.36 0.32 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.17 8.04 -51.93 -0.42 0.76 16 33 H 0.08 0.83 6.51 -51.93 -0.34 0.49 16 34 H 0.08 0.75 8.01 -51.93 -0.42 0.34 16 35 H 0.13 1.04 8.04 -52.48 -0.42 0.62 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.06 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.08 1.75 8.10 -51.93 -0.42 1.33 16 41 H 0.39 10.47 6.32 45.56 0.29 10.76 16 42 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 43 H 0.09 1.52 8.10 -51.93 -0.42 1.10 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 372.82 15.07 5.62 5.62 Total: -1.00 -29.78 372.82 -8.97 -38.75 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -5.85 Total: 12.38 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.30 Total: -3.99 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.07 Total: -36.76 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.38 Total: -28.68 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.78 -8.97 -38.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186813120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.338 kcal (2) G-P(sol) polarization free energy of solvation -29.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds