Wall clock time and date at job start Tue Mar 31 2020 12:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47116 * 2 1 4 4 C 1.52997 * 109.47345 * 120.00378 * 2 1 3 5 5 C 1.53004 * 109.47157 * 295.00254 * 4 2 1 6 6 C 1.50692 * 109.47248 * 179.97438 * 5 4 2 7 7 C 1.38224 * 120.01694 * 99.99598 * 6 5 4 8 8 C 1.38223 * 120.03001 * 179.97438 * 7 6 5 9 9 C 1.38266 * 120.04756 * 0.02562 * 8 7 6 10 10 C 1.38177 * 120.02946 * 359.97438 * 9 8 7 11 11 C 1.38439 * 120.01394 * 279.97582 * 6 5 4 12 12 F 1.35096 * 120.02208 * 0.04426 * 11 6 5 13 13 C 1.50699 * 109.47294 * 240.00472 * 2 1 3 14 14 O 1.21285 * 120.00006 * 264.03301 * 13 2 1 15 15 N 1.34783 * 120.00281 * 84.02696 * 13 2 1 16 16 C 1.47062 * 136.05769 * 183.31780 * 15 13 2 17 17 C 1.53240 * 88.08190 * 207.20406 * 16 15 13 18 18 O 1.42905 * 114.19838 * 87.72767 * 17 16 15 19 19 C 1.50701 * 114.32836 * 220.46959 * 17 16 15 20 20 H 1.08004 * 119.99802 * 93.75988 * 19 17 16 21 21 C 1.37873 * 119.99972 * 273.76145 * 19 17 16 22 22 N 1.31515 * 119.99998 * 359.97438 * 21 19 17 23 23 Si 1.86796 * 120.00090 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47491 * 89.99503 * 23 21 19 25 25 H 1.48497 * 109.47572 * 209.99880 * 23 21 19 26 26 H 1.48507 * 109.46895 * 329.99569 * 23 21 19 27 27 C 1.47063 * 136.05216 * 3.69247 * 15 13 2 28 28 H 1.09005 * 109.47086 * 186.22093 * 1 2 3 29 29 H 1.09000 * 109.47383 * 306.22183 * 1 2 3 30 30 H 1.09004 * 109.47157 * 66.21650 * 1 2 3 31 31 H 1.09003 * 109.47206 * 175.00171 * 4 2 1 32 32 H 1.09001 * 109.47263 * 54.99932 * 4 2 1 33 33 H 1.08994 * 109.47236 * 59.99282 * 5 4 2 34 34 H 1.09007 * 109.46766 * 299.99537 * 5 4 2 35 35 H 1.08008 * 119.98421 * 0.25629 * 7 6 5 36 36 H 1.07994 * 119.97443 * 179.97438 * 8 7 6 37 37 H 1.08004 * 119.98346 * 179.97438 * 9 8 7 38 38 H 1.07996 * 120.01074 * 180.02562 * 10 9 8 39 39 H 1.09003 * 113.46793 * 321.93664 * 16 15 13 40 40 H 1.08993 * 113.47138 * 92.37874 * 16 15 13 41 41 H 0.96701 * 113.99915 * 86.29951 * 18 17 16 42 42 H 0.97001 * 119.99803 * 180.02562 * 22 21 19 43 43 H 1.09001 * 113.46415 * 267.61723 * 27 15 13 44 44 H 1.08997 * 113.47203 * 37.99887 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 0.0688 2.4953 6 6 2.1370 -0.6420 3.7257 7 6 3.2918 -0.2106 4.3508 8 6 3.7521 -0.8620 5.4797 9 6 3.0583 -1.9461 5.9847 10 6 1.9035 -2.3793 5.3615 11 6 1.4413 -1.7271 4.2307 12 9 0.3127 -2.1500 3.6203 13 6 2.0323 -0.7103 -1.2305 14 8 2.3374 -1.8827 -1.1719 15 7 2.1425 -0.0428 -2.3962 16 6 2.5177 -0.3793 -3.7778 17 6 2.9735 1.0732 -3.9532 18 8 4.3286 1.3125 -3.5675 19 6 2.6179 1.6787 -5.2866 20 1 1.7051 2.2456 -5.3960 21 6 3.4577 1.5090 -6.3667 22 7 4.5694 0.8192 -6.2333 23 14 3.0173 2.2602 -8.0193 24 1 3.5859 3.6292 -8.1082 25 1 3.5758 1.4206 -9.1094 26 1 1.5399 2.3281 -8.1542 27 6 1.9466 1.3440 -2.8449 28 1 -0.3633 -1.0217 0.1114 29 1 -0.3634 0.6073 0.8290 30 1 -0.3634 0.4145 -0.9404 31 1 3.1263 -0.7995 1.2055 32 1 1.6054 -1.7199 1.2950 33 1 0.5489 0.1470 2.5389 34 1 2.0699 1.0674 2.4495 35 1 3.8324 0.6388 3.9596 36 1 4.6547 -0.5244 5.9671 37 1 3.4190 -2.4546 6.8666 38 1 1.3616 -3.2258 5.7565 39 1 3.3333 -1.0996 -3.8429 40 1 1.6678 -0.6464 -4.4057 41 1 4.9730 1.1409 -4.2679 42 1 5.1605 0.7001 -6.9932 43 1 0.9429 1.5406 -3.2218 44 1 2.2765 2.0861 -2.1180 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186813120.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:12 Heat of formation + Delta-G solvation = -102.734456 kcal Electronic energy + Delta-G solvation = -26633.504534 eV Core-core repulsion = 22658.213557 eV Total energy + Delta-G solvation = -3975.290977 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.87572 -41.42595 -40.08059 -39.35997 -36.62269 -35.89847 -34.12644 -33.36612 -31.44412 -30.51730 -29.16072 -27.39348 -26.85570 -26.03541 -23.70063 -23.42948 -22.02600 -21.30766 -19.84199 -19.19037 -18.51034 -18.02496 -17.42034 -17.28638 -16.93847 -16.56438 -16.47922 -16.30689 -16.01682 -15.65144 -15.08952 -14.86588 -14.71659 -14.51885 -14.36234 -14.03758 -13.83492 -13.76196 -13.56988 -13.42009 -13.23266 -12.84837 -12.79998 -12.72130 -12.54122 -12.49120 -12.22089 -12.19057 -12.10346 -11.69023 -11.68164 -11.43721 -10.80904 -10.55664 -10.27973 -9.88083 -9.59476 -9.55948 -8.27715 -6.45819 0.21472 0.28409 1.47075 1.49292 1.59116 1.63463 1.97007 2.40016 2.66271 2.94879 3.35139 3.42102 3.56116 3.75385 3.78353 3.90103 4.03245 4.13522 4.15284 4.29164 4.36388 4.41010 4.45263 4.50105 4.54902 4.64247 4.68456 4.74217 4.83646 4.88102 4.91882 4.92936 5.00777 5.03637 5.14004 5.20078 5.24157 5.30582 5.31962 5.45886 5.50909 5.72692 5.88776 5.99401 6.62149 6.91240 7.15697 7.28729 7.44628 8.78416 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029592 B = 0.002395 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.963732 B =11687.326587 C =12022.443239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.110 0.890 4 C -0.085 4.085 5 C -0.073 4.073 6 C -0.128 4.128 7 C -0.098 4.098 8 C -0.129 4.129 9 C -0.097 4.097 10 C -0.163 4.163 11 C 0.070 3.930 12 F -0.151 7.151 13 C 0.528 3.472 14 O -0.606 6.606 15 N -0.637 5.637 16 C 0.075 3.925 17 C 0.217 3.783 18 O -0.585 6.585 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.024 3.976 22 N -0.924 5.924 23 Si 0.974 3.026 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.262 1.262 27 C 0.117 3.883 28 H 0.048 0.952 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.145 0.855 39 H 0.028 0.972 40 H 0.083 0.917 41 H 0.387 0.613 42 H 0.275 0.725 43 H 0.113 0.887 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 1.603 21.331 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.128 0.872 4 C -0.123 4.123 5 C -0.110 4.110 6 C -0.129 4.129 7 C -0.116 4.116 8 C -0.146 4.146 9 C -0.115 4.115 10 C -0.182 4.182 11 C 0.051 3.949 12 F -0.130 7.130 13 C 0.320 3.680 14 O -0.489 6.489 15 N -0.369 5.369 16 C -0.049 4.049 17 C 0.176 3.824 18 O -0.397 6.397 19 C -0.585 4.585 20 H 0.102 0.898 21 C -0.176 4.176 22 N -0.566 5.566 23 Si 0.799 3.201 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.186 1.186 27 C -0.004 4.004 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.173 0.827 37 H 0.177 0.823 38 H 0.163 0.837 39 H 0.047 0.953 40 H 0.101 0.899 41 H 0.243 0.757 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.768 0.964 22.000 22.764 hybrid contribution 0.227 -0.665 -1.940 2.063 sum -5.541 0.299 20.060 20.813 Atomic orbital electron populations 1.21742 0.90835 1.02691 1.03849 1.21249 0.99028 1.00811 0.90283 0.87199 1.21266 1.00214 0.98645 0.92203 1.20581 1.02254 0.99050 0.89092 1.20136 0.97300 0.96679 0.98787 1.21322 0.94213 1.00535 0.95499 1.21608 1.00997 0.95868 0.96173 1.21391 0.93437 0.96419 1.00245 1.21431 0.99349 1.01893 0.95531 1.17980 0.85170 0.96902 0.94851 1.91453 1.49299 1.89474 1.82789 1.21108 0.76639 0.86093 0.84196 1.90608 1.53615 1.18893 1.85773 1.49851 1.65683 1.13622 1.07739 1.23976 0.98210 1.02181 0.80483 1.19826 0.81011 0.89338 0.92272 1.85987 1.17860 1.90752 1.45138 1.21734 1.08290 1.34763 0.93754 0.89796 1.25901 0.94451 0.94100 1.03148 1.69369 1.12940 1.40806 1.33436 0.85300 0.78982 0.78077 0.77755 1.19908 1.21314 1.18571 1.23363 0.99992 0.82047 0.95033 0.93272 0.88238 0.91897 0.93151 0.93229 0.89606 0.88172 0.83386 0.82675 0.82305 0.83686 0.95335 0.89852 0.75713 0.91547 0.86905 0.89624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.77 71.98 0.63 -2.54 16 2 C -0.09 -2.70 2.56 -11.54 -0.03 -2.73 16 3 H 0.11 2.78 8.05 -2.39 -0.02 2.76 16 4 C -0.09 -2.40 4.09 30.59 0.13 -2.28 16 5 C -0.07 -1.49 4.83 29.85 0.14 -1.35 16 6 C -0.13 -2.72 5.14 -19.82 -0.10 -2.82 16 7 C -0.10 -1.67 9.67 22.26 0.22 -1.45 16 8 C -0.13 -1.78 10.04 22.27 0.22 -1.55 16 9 C -0.10 -1.34 10.04 22.26 0.22 -1.12 16 10 C -0.16 -2.95 10.03 22.31 0.22 -2.73 16 11 C 0.07 1.61 7.24 22.38 0.16 1.77 16 12 F -0.15 -3.97 16.66 44.97 0.75 -3.22 16 13 C 0.53 21.81 7.20 87.66 0.63 22.44 16 14 O -0.61 -30.21 16.96 -3.04 -0.05 -30.27 16 15 N -0.64 -27.02 3.69 -859.28 -3.17 -30.19 16 16 C 0.08 3.61 8.02 83.10 0.67 4.28 16 17 C 0.22 10.37 1.57 -11.29 -0.02 10.35 16 18 O -0.58 -30.69 13.54 -148.98 -2.02 -32.70 16 19 C -0.55 -26.79 8.69 25.60 0.22 -26.57 16 20 H 0.08 3.82 7.81 -2.91 -0.02 3.80 16 21 C 0.02 1.18 5.39 84.65 0.46 1.63 16 22 N -0.92 -48.55 11.01 21.45 0.24 -48.31 16 23 Si 0.97 39.33 29.54 68.60 2.03 41.36 16 24 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 25 H -0.29 -11.68 7.11 99.48 0.71 -10.97 16 26 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 27 C 0.12 4.47 7.77 83.18 0.65 5.11 16 28 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.10 1.71 6.88 -2.39 -0.02 1.70 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.63 8.04 -2.39 -0.02 1.61 16 33 H 0.09 1.63 6.51 -2.39 -0.02 1.62 16 34 H 0.10 1.62 8.01 -2.38 -0.02 1.60 16 35 H 0.15 1.96 8.04 -2.91 -0.02 1.94 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 37 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.08 3.82 8.10 -2.39 -0.02 3.80 16 41 H 0.39 21.20 6.32 -74.06 -0.47 20.74 16 42 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 43 H 0.11 3.68 8.10 -2.39 -0.02 3.66 16 44 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -66.79 372.82 2.73 -64.05 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: 0.54 Total: 38.84 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 4.42 Total: 0.45 kcal Atomic # 7 Polarization: -75.57 SS G_CDS: -2.94 Total: -78.50 kcal Atomic # 8 Polarization: -60.90 SS G_CDS: -2.07 Total: -62.97 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.75 Total: -3.22 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -66.79 2.73 -64.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186813120.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.683 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds