Wall clock time and date at job start Tue Mar 31 2020 13:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34226 * 116.99581 * 2 1 4 4 O 1.20826 * 120.00449 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99691 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.47351 * 179.97438 * 5 3 2 7 7 C 1.38102 * 119.57368 * 125.01806 * 6 5 3 8 8 C 1.38810 * 119.30838 * 180.02562 * 7 6 5 9 9 C 1.38394 * 118.49723 * 359.73486 * 8 7 6 10 10 C 1.39009 * 119.09794 * 0.50807 * 9 8 7 11 11 N 1.39395 * 119.69325 * 179.74928 * 10 9 8 12 12 C 1.34777 * 120.00395 * 185.14729 * 11 10 9 13 13 O 1.21575 * 119.99402 * 354.92381 * 12 11 10 14 14 N 1.34770 * 120.00631 * 174.92303 * 12 11 10 15 15 C 1.46505 * 119.99530 * 0.02562 * 14 12 11 16 16 C 1.46498 * 120.00566 * 180.02562 * 14 12 11 17 17 H 1.09008 * 109.46778 * 359.97438 * 16 14 12 18 18 C 1.52995 * 109.47251 * 119.99652 * 16 14 12 19 19 C 1.50700 * 109.46980 * 240.00151 * 16 14 12 20 20 H 1.08000 * 120.00012 * 359.97438 * 19 16 14 21 21 C 1.37877 * 120.00041 * 179.97438 * 19 16 14 22 22 N 1.31516 * 119.99627 * 359.97438 * 21 19 16 23 23 Si 1.86796 * 120.00073 * 179.97438 * 21 19 16 24 24 H 1.48495 * 109.47112 * 90.00079 * 23 21 19 25 25 H 1.48509 * 109.47171 * 210.00183 * 23 21 19 26 26 H 1.48503 * 109.47340 * 329.99702 * 23 21 19 27 27 N 1.31916 * 119.57607 * 305.00523 * 6 5 3 28 28 H 1.08995 * 109.47210 * 300.00333 * 1 2 3 29 29 H 1.08998 * 109.46766 * 60.00327 * 1 2 3 30 30 H 1.08998 * 109.46792 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47221 * 59.99758 * 5 3 2 32 32 H 1.08996 * 109.47380 * 300.00073 * 5 3 2 33 33 H 1.07991 * 120.34807 * 359.97438 * 7 6 5 34 34 H 1.07997 * 120.75390 * 179.97438 * 8 7 6 35 35 H 1.07990 * 120.45034 * 180.25988 * 9 8 7 36 36 H 0.97000 * 120.00194 * 5.15758 * 11 10 9 37 37 H 1.09002 * 109.47312 * 269.99804 * 15 14 12 38 38 H 1.09000 * 109.47410 * 30.00014 * 15 14 12 39 39 H 1.08996 * 109.47029 * 150.00237 * 15 14 12 40 40 H 1.09004 * 109.46797 * 179.97438 * 18 16 14 41 41 H 1.08995 * 109.47114 * 60.00721 * 18 16 14 42 42 H 1.08993 * 109.47177 * 299.99788 * 18 16 14 43 43 H 0.97001 * 119.99551 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 3.9936 2.7200 -0.0002 7 6 4.8474 3.1789 0.9836 8 6 5.2371 4.5111 0.9779 9 6 4.7562 5.3355 -0.0243 10 6 3.8957 4.8070 -0.9797 11 7 3.3998 5.6274 -1.9916 12 6 2.4855 5.1499 -2.8591 13 8 2.1617 3.9788 -2.8174 14 7 1.9302 5.9704 -3.7727 15 6 2.3209 7.3815 -3.8232 16 6 0.9360 5.4514 -4.7152 17 1 0.7760 4.3898 -4.5266 18 6 -0.3822 6.2065 -4.5333 19 6 1.4333 5.6412 -6.1250 20 1 2.3937 6.1027 -6.3013 21 6 0.6623 5.2258 -7.1899 22 7 -0.5070 4.6634 -6.9751 23 14 1.2784 5.4617 -8.9374 24 1 2.0551 4.2666 -9.3540 25 1 0.1210 5.6428 -9.8502 26 1 2.1488 6.6634 -8.9975 27 7 3.5475 3.5304 -0.9406 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.9564 0.7806 -0.8891 32 1 3.9557 0.7810 0.8908 33 1 5.2075 2.5084 1.7497 34 1 5.9035 4.8948 1.7362 35 1 5.0423 6.3762 -0.0614 36 1 3.7128 6.5420 -2.0716 37 1 1.6679 7.9628 -3.1722 38 1 3.3531 7.4850 -3.4886 39 1 2.2322 7.7466 -4.8464 40 1 -1.1217 5.8206 -5.2349 41 1 -0.2219 7.2679 -4.7223 42 1 -0.7418 6.0692 -3.5136 43 1 -1.0493 4.3707 -7.7243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191066811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:01 Heat of formation + Delta-G solvation = -73.002081 kcal Electronic energy + Delta-G solvation = -27507.514339 eV Core-core repulsion = 23553.432616 eV Total energy + Delta-G solvation = -3954.081723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.95230 -41.33520 -40.33037 -37.56514 -37.23592 -36.03479 -34.75488 -33.78364 -32.56075 -31.13169 -29.64875 -28.01877 -27.58696 -27.31811 -24.85782 -23.90940 -22.81251 -21.90614 -20.73420 -19.25283 -18.69918 -18.52790 -18.06920 -17.66368 -17.51326 -16.99341 -16.80366 -16.56464 -16.42066 -15.90185 -15.22276 -14.87003 -14.78247 -14.60109 -14.35804 -14.25957 -13.87939 -13.76498 -13.56731 -13.19772 -13.09900 -12.98437 -12.91913 -12.78282 -12.74807 -12.63932 -12.21528 -12.09442 -11.79356 -11.71773 -11.46365 -11.25600 -11.14458 -10.63726 -10.54658 -9.88772 -9.43679 -9.01647 -8.14625 -6.31844 0.16841 0.54936 1.29223 1.40183 1.42086 1.51947 1.66457 1.81182 2.28842 2.42039 2.93552 3.06603 3.13048 3.34734 3.84706 3.98080 4.09753 4.24925 4.26999 4.29225 4.32509 4.39227 4.48358 4.54909 4.64014 4.66458 4.69511 4.82413 4.85574 4.94168 5.04061 5.06969 5.31301 5.39835 5.42032 5.46389 5.50866 5.65984 5.89062 5.98817 6.13549 6.17885 6.76152 6.82570 6.94906 7.33524 7.41471 7.78320 8.90052 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003898 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.006045 B = 7180.719679 C = 8575.476846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.453 3.547 4 O -0.527 6.527 5 C -0.054 4.054 6 C 0.127 3.873 7 C -0.188 4.188 8 C -0.042 4.042 9 C -0.203 4.203 10 C 0.347 3.653 11 N -0.662 5.662 12 C 0.679 3.321 13 O -0.584 6.584 14 N -0.617 5.617 15 C 0.081 3.919 16 C 0.282 3.718 17 H 0.001 0.999 18 C -0.129 4.129 19 C -0.537 4.537 20 H 0.063 0.937 21 C 0.013 3.987 22 N -0.919 5.919 23 Si 0.969 3.031 24 H -0.284 1.284 25 H -0.279 1.279 26 H -0.259 1.259 27 N -0.508 5.508 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.138 0.862 31 H 0.125 0.875 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.168 0.832 36 H 0.425 0.575 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.011 0.989 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.194 -0.779 19.093 23.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.281 6.281 3 C 0.297 3.703 4 O -0.414 6.414 5 C -0.092 4.092 6 C -0.012 4.012 7 C -0.209 4.209 8 C -0.068 4.068 9 C -0.227 4.227 10 C 0.116 3.884 11 N -0.314 5.314 12 C 0.380 3.620 13 O -0.459 6.459 14 N -0.353 5.353 15 C -0.061 4.061 16 C 0.179 3.821 17 H 0.019 0.981 18 C -0.188 4.188 19 C -0.575 4.575 20 H 0.081 0.919 21 C -0.186 4.186 22 N -0.558 5.558 23 Si 0.794 3.206 24 H -0.210 1.210 25 H -0.204 1.204 26 H -0.183 1.183 27 N -0.222 5.222 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.156 0.844 31 H 0.143 0.857 32 H 0.190 0.810 33 H 0.195 0.805 34 H 0.203 0.797 35 H 0.185 0.815 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.030 0.970 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.911 -1.642 18.270 21.871 hybrid contribution -0.113 0.765 -0.928 1.208 sum 11.797 -0.877 17.342 20.993 Atomic orbital electron populations 1.23409 0.75613 1.05451 1.01526 1.86445 1.24296 1.32937 1.84423 1.24138 0.93135 0.81081 0.71994 1.90748 1.67982 1.37682 1.44991 1.20428 0.86227 0.93427 1.09070 1.20860 0.94376 0.94613 0.91352 1.22192 1.00427 0.98137 1.00168 1.21834 0.96300 0.92256 0.96370 1.21810 1.01253 1.03428 0.96160 1.18662 0.92768 0.88255 0.88751 1.42789 1.42740 1.16204 1.29714 1.16352 0.80271 0.85150 0.80268 1.90962 1.64979 1.16902 1.73104 1.47506 1.43661 1.10367 1.33757 1.21783 1.00042 0.80455 1.03834 1.18384 0.84700 0.92753 0.86254 0.98057 1.21859 0.99493 0.99652 0.97755 1.21576 1.04246 1.40759 0.90949 0.91917 1.25789 0.94923 0.94399 1.03527 1.70050 1.12234 1.40953 1.32598 0.85396 0.77939 0.78638 0.78650 1.20983 1.20434 1.18274 1.67236 1.24305 1.04153 1.26530 0.91831 0.94529 0.84362 0.85686 0.81016 0.80461 0.79718 0.81475 0.73376 0.91916 0.89798 0.90561 0.91283 0.93131 0.97025 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 10.56 113.37 1.20 2.05 16 2 O -0.36 -10.52 10.57 -51.38 -0.54 -11.06 16 3 C 0.45 15.15 7.89 71.24 0.56 15.71 16 4 O -0.53 -23.27 15.08 21.96 0.33 -22.94 16 5 C -0.05 -1.29 6.21 29.10 0.18 -1.11 16 6 C 0.13 3.67 5.76 42.51 0.24 3.91 16 7 C -0.19 -3.43 9.71 22.37 0.22 -3.22 16 8 C -0.04 -0.67 10.17 22.44 0.23 -0.44 16 9 C -0.20 -4.36 9.94 22.49 0.22 -4.13 16 10 C 0.35 11.84 7.42 132.91 0.99 12.82 16 11 N -0.66 -23.55 5.27 -322.22 -1.70 -25.25 16 12 C 0.68 32.71 8.24 179.06 1.48 34.19 16 13 O -0.58 -34.68 13.93 -3.95 -0.06 -34.74 16 14 N -0.62 -28.69 2.75 -844.86 -2.33 -31.02 16 15 C 0.08 2.69 9.24 127.77 1.18 3.87 16 16 C 0.28 15.83 2.63 44.24 0.12 15.95 16 17 H 0.00 0.10 6.90 -2.38 -0.02 0.08 16 18 C -0.13 -6.72 8.97 71.98 0.65 -6.07 16 19 C -0.54 -30.50 7.99 25.60 0.20 -30.29 16 20 H 0.06 3.43 7.33 -2.91 -0.02 3.40 16 21 C 0.01 0.73 5.30 84.65 0.45 1.18 16 22 N -0.92 -55.23 11.32 21.45 0.24 -54.99 16 23 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 24 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 27 N -0.51 -20.17 6.75 -181.12 -1.22 -21.39 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 30 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.17 2.01 7.86 -2.39 -0.02 1.99 16 33 H 0.18 1.54 7.94 -2.92 -0.02 1.52 16 34 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.17 2.27 8.06 -2.92 -0.02 2.25 16 36 H 0.43 10.91 6.39 -92.71 -0.59 10.32 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.05 6.29 -2.39 -0.02 2.04 16 39 H 0.08 2.67 7.02 -2.39 -0.02 2.65 16 40 H 0.07 3.94 6.07 -2.39 -0.01 3.92 16 41 H 0.05 2.35 7.67 -2.39 -0.02 2.33 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -94.16 363.30 5.12 -89.04 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.45 Total: 21.56 kcal Atomic # 6 Polarization: 36.52 SS G_CDS: 7.91 Total: 44.43 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -5.00 Total: -132.64 kcal Atomic # 8 Polarization: -68.47 SS G_CDS: -0.27 Total: -68.73 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -94.16 5.12 -89.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191066811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.037 kcal (2) G-P(sol) polarization free energy of solvation -94.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds