Wall clock time and date at job start Tue Mar 31 2020 13:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46792 * 2 1 4 4 C 1.50705 * 109.46884 * 119.99913 * 2 1 3 5 5 H 1.08004 * 119.99586 * 120.00102 * 4 2 1 6 6 C 1.37869 * 120.00347 * 299.99927 * 4 2 1 7 7 N 1.31521 * 119.99840 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46838 * 90.00161 * 8 6 4 10 10 H 1.48498 * 109.46965 * 209.99941 * 8 6 4 11 11 H 1.48490 * 109.46953 * 330.00290 * 8 6 4 12 12 N 1.46497 * 109.47062 * 239.99781 * 2 1 3 13 13 C 1.46503 * 120.00376 * 300.00154 * 12 2 1 14 14 C 1.34783 * 119.99589 * 120.00010 * 12 2 1 15 15 O 1.21281 * 120.00061 * 359.97438 * 14 12 2 16 16 C 1.50705 * 119.99793 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.46892 * 179.97438 * 16 14 12 18 18 N 1.46503 * 109.47000 * 180.02562 * 17 16 14 19 19 C 1.39670 * 119.99775 * 180.02562 * 18 17 16 20 20 C 1.38934 * 120.07748 * 5.76856 * 19 18 17 21 21 C 1.38082 * 119.92430 * 180.02562 * 20 19 18 22 22 C 1.38314 * 120.07586 * 359.96155 * 21 20 19 23 23 C 1.38261 * 120.14707 * 0.02562 * 22 21 20 24 24 C 1.38122 * 120.08024 * 0.02562 * 23 22 21 25 25 N 1.48005 * 120.04052 * 179.72678 * 24 23 22 26 26 O 1.21798 * 119.99939 * 353.87301 * 25 24 23 27 27 O 1.21801 * 119.99804 * 173.87902 * 25 24 23 28 28 H 1.09004 * 109.47202 * 59.99985 * 1 2 3 29 29 H 1.09002 * 109.46792 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47322 * 299.99800 * 1 2 3 31 31 H 0.97002 * 119.99979 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.46730 * 270.00026 * 13 12 2 33 33 H 1.08991 * 109.46721 * 29.99882 * 13 12 2 34 34 H 1.09003 * 109.47078 * 150.00107 * 13 12 2 35 35 H 1.09004 * 109.46929 * 60.00376 * 16 14 12 36 36 H 1.08995 * 109.47134 * 300.00002 * 16 14 12 37 37 H 1.08997 * 109.47165 * 60.00115 * 17 16 14 38 38 H 1.09008 * 109.47162 * 300.00201 * 17 16 14 39 39 H 0.96997 * 119.99840 * 0.02562 * 18 17 16 40 40 H 1.07999 * 120.03463 * 0.02562 * 20 19 18 41 41 H 1.07999 * 119.96149 * 179.97438 * 21 20 19 42 42 H 1.08000 * 119.92355 * 180.02562 * 22 21 20 43 43 H 1.08004 * 119.95824 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.6305 -0.5440 4.4119 10 1 1.3444 -0.9490 5.1123 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6906 -1.1961 13 6 1.6644 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0858 1.1257 -1.8916 16 6 3.2960 -0.7462 -3.3135 17 6 4.1454 0.2157 -4.1467 18 7 4.6337 -0.4749 -5.3429 19 6 5.4366 0.2040 -6.2623 20 6 5.8721 1.4943 -5.9870 21 6 6.6653 2.1627 -6.8984 22 6 7.0270 1.5489 -8.0839 23 6 6.5955 0.2649 -8.3609 24 6 5.8010 -0.4091 -7.4541 25 7 5.3346 -1.7814 -7.7542 26 8 5.5565 -2.2750 -8.8453 27 8 4.7289 -2.4169 -6.9099 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7081 1.1608 3.4844 32 1 2.4157 -2.7377 -0.9716 33 1 0.6905 -2.3002 -0.9847 34 1 1.6238 -2.2852 -2.5002 35 1 2.4484 -1.0891 -3.9069 36 1 3.9018 -1.6023 -3.0165 37 1 4.9929 0.5591 -3.5535 38 1 3.5392 1.0717 -4.4437 39 1 4.3994 -1.4035 -5.4963 40 1 5.5905 1.9739 -5.0612 41 1 7.0038 3.1659 -6.6852 42 1 7.6478 2.0739 -8.7949 43 1 6.8794 -0.2114 -9.2877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264099159.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:53 Heat of formation + Delta-G solvation = -5.114260 kcal Electronic energy + Delta-G solvation = -26531.659078 eV Core-core repulsion = 22580.521192 eV Total energy + Delta-G solvation = -3951.137886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.38083 -39.91548 -39.23288 -37.07865 -36.13601 -35.36117 -33.01993 -32.34942 -31.71856 -29.74435 -28.60265 -26.43734 -26.20027 -25.27917 -24.56338 -22.79123 -22.07269 -20.81520 -19.39023 -18.82075 -18.43249 -17.70344 -17.56222 -16.83717 -16.49935 -15.89868 -15.77714 -15.40340 -15.08631 -14.64423 -14.37722 -14.27753 -14.09515 -13.44596 -12.89022 -12.73944 -12.67273 -12.45882 -12.15850 -11.90044 -11.77016 -11.63531 -11.57329 -11.42556 -11.34520 -11.09544 -11.06833 -10.87815 -10.76250 -10.56256 -10.29571 -10.21842 -9.86138 -9.25586 -9.09447 -8.47988 -8.10080 -7.68881 -6.12511 -4.20795 -0.23104 0.91331 1.20668 1.32381 2.81867 3.12121 3.22093 3.23624 3.30518 3.32894 3.90990 4.06166 4.35193 4.37596 4.59740 4.66078 4.72310 4.84701 4.98695 5.05456 5.18874 5.24013 5.40523 5.45219 5.63789 5.67464 5.74026 5.77519 5.90611 6.01215 6.02294 6.24465 6.25872 6.64717 6.70027 6.75436 6.98852 7.25563 7.33578 7.44207 7.58251 7.65706 7.94712 8.12937 8.43236 8.75249 8.93094 9.46001 10.92804 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.002459 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.006308 B =11384.636114 C =11926.932897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.590 5.590 13 C 0.084 3.916 14 C 0.509 3.491 15 O -0.555 6.555 16 C -0.153 4.153 17 C 0.126 3.874 18 N -0.715 5.715 19 C 0.290 3.710 20 C -0.201 4.201 21 C -0.017 4.017 22 C -0.184 4.184 23 C -0.012 4.012 24 C -0.134 4.134 25 N 0.055 4.945 26 O -0.166 6.166 27 O -0.205 6.205 28 H 0.011 0.989 29 H 0.031 0.969 30 H 0.094 0.906 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.419 0.581 40 H 0.149 0.851 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 -0.474 -19.756 21.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.060 4.060 14 C 0.294 3.706 15 O -0.435 6.435 16 C -0.193 4.193 17 C 0.002 3.998 18 N -0.352 5.352 19 C 0.175 3.825 20 C -0.224 4.224 21 C -0.037 4.037 22 C -0.205 4.205 23 C -0.032 4.032 24 C -0.225 4.225 25 N 0.562 4.438 26 O -0.382 6.382 27 O -0.403 6.403 28 H 0.030 0.970 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.268 0.732 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.158 0.842 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.127 0.819 -19.070 21.157 hybrid contribution 0.033 -1.350 0.818 1.579 sum 9.160 -0.532 -18.251 20.428 Atomic orbital electron populations 1.22103 0.98168 0.99430 1.00909 1.18970 0.90912 0.94514 0.79884 0.91829 1.21308 1.31906 1.13027 0.90272 0.92279 1.24895 0.94903 0.94983 0.99002 1.69878 1.36258 1.22646 1.23821 0.86485 0.78662 0.79874 0.82319 1.20598 1.21082 1.19907 1.48243 1.48564 1.11763 1.23476 1.21607 1.01862 0.83045 0.99496 1.20001 0.79469 0.87009 0.84081 1.90662 1.58691 1.17024 1.77074 1.21803 1.01121 0.99943 0.96459 1.21334 0.98554 0.95232 0.84643 1.46226 1.50559 1.16696 1.21721 1.17643 0.87291 0.91655 0.85922 1.20941 1.04880 0.93317 1.03267 1.21388 0.91225 0.99338 0.91708 1.20926 1.05573 0.94641 0.99320 1.20787 0.91149 0.93963 0.97282 1.20528 1.16287 0.85346 1.00360 1.43448 0.97960 1.02503 0.99881 1.94510 1.60836 1.72403 1.10425 1.94168 1.42252 1.61690 1.42203 0.96966 0.95043 0.88727 0.92641 0.93086 0.90697 0.92791 0.88586 0.88462 0.90224 0.90348 0.73232 0.83322 0.84148 0.84164 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 8.95 37.16 0.33 -3.11 16 2 C 0.26 6.37 2.64 -69.08 -0.18 6.19 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.47 16 4 C -0.53 -13.94 8.37 -34.44 -0.29 -14.22 16 5 H 0.06 1.54 7.65 -52.48 -0.40 1.14 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.10 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.59 -11.92 2.75 -175.26 -0.48 -12.41 16 13 C 0.08 1.33 9.48 59.85 0.57 1.90 16 14 C 0.51 9.63 7.67 -10.98 -0.08 9.55 16 15 O -0.55 -12.53 15.31 5.56 0.09 -12.45 16 16 C -0.15 -2.00 4.37 -27.88 -0.12 -2.13 16 17 C 0.13 1.54 4.24 -4.04 -0.02 1.52 16 18 N -0.72 -8.19 5.61 -58.63 -0.33 -8.52 16 19 C 0.29 3.17 6.63 -83.78 -0.56 2.62 16 20 C -0.20 -1.82 9.32 -39.38 -0.37 -2.18 16 21 C -0.02 -0.12 10.04 -39.61 -0.40 -0.51 16 22 C -0.18 -1.18 10.04 -39.54 -0.40 -1.58 16 23 C -0.01 -0.10 9.55 -39.62 -0.38 -0.48 16 24 C -0.13 -1.49 6.86 -79.75 -0.55 -2.04 16 25 N 0.05 0.72 4.45 34.06 0.15 0.87 16 26 O -0.17 -2.23 18.47 -29.46 -0.54 -2.77 16 27 O -0.21 -2.83 15.71 -29.46 -0.46 -3.29 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.66 6.44 -51.93 -0.33 0.32 16 35 H 0.10 1.09 7.40 -51.93 -0.38 0.70 16 36 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 37 H 0.08 1.01 7.68 -51.93 -0.40 0.61 16 38 H 0.08 0.99 8.09 -51.92 -0.42 0.57 16 39 H 0.42 4.93 4.92 -41.18 -0.20 4.73 16 40 H 0.15 1.29 6.73 -52.49 -0.35 0.94 16 41 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 43 H 0.15 1.02 7.62 -52.48 -0.40 0.62 16 LS Contribution 359.36 15.07 5.42 5.42 Total: -1.00 -31.56 359.36 -8.59 -40.14 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.50 Total: 4.22 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.53 Total: -2.84 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -0.03 Total: -44.16 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.92 Total: -18.51 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.56 -8.59 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264099159.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.027 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds