Wall clock time and date at job start Tue Mar 31 2020 12:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47117 * 2 1 4 4 O 1.42900 * 109.47104 * 120.00473 * 2 1 3 5 5 C 1.35723 * 117.00285 * 90.00077 * 4 2 1 6 6 N 1.32153 * 119.73147 * 359.97438 * 5 4 2 7 7 C 1.31990 * 121.72625 * 180.02562 * 6 5 4 8 8 C 1.38111 * 120.98779 * 359.97438 * 7 6 5 9 9 C 1.38697 * 119.35443 * 0.29997 * 8 7 6 10 10 C 1.39035 * 118.42125 * 359.45909 * 9 8 7 11 11 N 1.39880 * 120.51505 * 180.24282 * 10 9 8 12 12 C 1.34777 * 120.00154 * 327.51282 * 11 10 9 13 13 O 1.21391 * 119.99756 * 5.39114 * 12 11 10 14 14 C 1.49333 * 120.00059 * 185.38764 * 12 11 10 15 15 O 1.21362 * 120.00148 * 359.36485 * 14 12 11 16 16 N 1.34775 * 120.00030 * 179.36258 * 14 12 11 17 17 C 1.46503 * 119.99743 * 354.33056 * 16 14 12 18 18 C 1.46494 * 120.00280 * 174.33401 * 16 14 12 19 19 C 1.50695 * 109.47455 * 90.00003 * 18 16 14 20 20 H 1.08003 * 120.00081 * 359.97438 * 19 18 16 21 21 C 1.37876 * 120.00232 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00103 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00101 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47272 * 89.99685 * 23 21 19 25 25 H 1.48499 * 109.46972 * 209.99626 * 23 21 19 26 26 H 1.48499 * 109.46966 * 329.99666 * 23 21 19 27 27 H 1.08997 * 109.46948 * 60.00131 * 1 2 3 28 28 H 1.09000 * 109.46892 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46978 * 299.99526 * 1 2 3 30 30 H 1.08998 * 109.46719 * 240.00031 * 2 1 3 31 31 H 1.08993 * 109.47170 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47553 * 300.00305 * 3 2 1 33 33 H 1.09004 * 109.47187 * 59.99969 * 3 2 1 34 34 H 1.07998 * 119.50977 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.31848 * 180.02562 * 8 7 6 36 36 H 1.07999 * 120.78971 * 179.70270 * 9 8 7 37 37 H 0.97005 * 119.99950 * 147.50975 * 11 10 9 38 38 H 1.09002 * 109.47005 * 84.12536 * 17 16 14 39 39 H 1.09001 * 109.47197 * 204.11906 * 17 16 14 40 40 H 1.09004 * 109.47538 * 324.12315 * 17 16 14 41 41 H 1.08997 * 109.47338 * 210.00215 * 18 16 14 42 42 H 1.09000 * 109.47276 * 329.99636 * 18 16 14 43 43 H 0.97004 * 119.99844 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2118 -2.0115 1.0651 6 7 1.9697 -2.6267 -0.0792 7 6 2.1552 -3.9257 -0.2216 8 6 2.6136 -4.6978 0.8278 9 6 2.8760 -4.0971 2.0500 10 6 2.6766 -2.7263 2.1700 11 7 2.9323 -2.0747 3.3810 12 6 2.7336 -2.7190 4.5481 13 8 2.4273 -3.8936 4.5484 14 6 2.8903 -1.9878 5.8407 15 8 3.2079 -0.8165 5.8407 16 7 2.6791 -2.6287 7.0073 17 6 2.1760 -4.0047 7.0065 18 6 2.9523 -1.9495 8.2762 19 6 1.7119 -1.2290 8.7377 20 1 0.8101 -1.2722 8.1448 21 6 1.7283 -0.5136 9.9162 22 7 2.8264 -0.4605 10.6379 23 14 0.1908 0.3802 10.4878 24 1 -0.6212 -0.5262 11.3389 25 1 0.5786 1.5801 11.2721 26 1 -0.6072 0.7973 9.3069 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.9463 -4.3917 -1.1732 35 1 2.7619 -5.7598 0.6991 36 1 3.2305 -4.6795 2.8875 37 1 3.2528 -1.1591 3.3809 38 1 3.0095 -4.6962 6.8822 39 1 1.6731 -4.2083 7.9518 40 1 1.4714 -4.1335 6.1849 41 1 3.2457 -2.6844 9.0259 42 1 3.7596 -1.2305 8.1370 43 1 2.8378 0.0426 11.4673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283309240.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:50 Heat of formation + Delta-G solvation = -54.785570 kcal Electronic energy + Delta-G solvation = -27098.293614 eV Core-core repulsion = 23145.001818 eV Total energy + Delta-G solvation = -3953.291796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.31093 -40.12471 -38.48830 -37.88144 -35.79241 -34.57847 -33.36335 -32.58801 -31.83003 -29.68113 -28.06345 -27.46335 -26.27539 -24.90585 -24.22235 -23.16990 -21.79571 -21.22267 -19.68380 -18.66076 -17.83231 -17.18062 -16.69365 -16.51806 -16.04316 -15.73843 -15.45204 -15.20848 -15.00066 -14.61201 -14.39628 -14.06956 -13.73985 -13.57278 -13.24590 -13.03210 -12.64611 -12.51821 -12.49098 -12.38309 -12.15250 -12.13296 -11.98808 -11.33557 -11.20395 -11.09512 -10.98082 -10.87685 -10.78115 -10.56685 -10.21685 -9.94463 -9.70107 -9.48892 -8.80125 -8.49114 -8.13785 -7.81433 -6.10364 -4.15517 0.82354 1.11697 1.86663 2.62638 2.78069 3.28648 3.35035 3.40038 3.53700 3.73758 3.94529 4.16969 4.40722 4.62534 4.68876 4.74619 4.77183 4.86792 4.98290 5.05076 5.21138 5.24677 5.34220 5.53268 5.57694 5.60134 5.72611 5.89011 5.91775 5.96854 6.00475 6.05579 6.11138 6.38203 6.50720 6.77936 7.08184 7.15435 7.25680 7.34621 7.62715 7.80000 7.88088 8.12131 8.17235 8.60462 8.88999 9.49530 10.97886 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014489 B = 0.003305 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.972837 B = 8470.552895 C = 9763.639927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 C -0.153 4.153 4 O -0.300 6.300 5 C 0.306 3.694 6 N -0.523 5.523 7 C 0.116 3.884 8 C -0.191 4.191 9 C -0.051 4.051 10 C 0.083 3.917 11 N -0.637 5.637 12 C 0.510 3.490 13 O -0.507 6.507 14 C 0.495 3.505 15 O -0.518 6.518 16 N -0.562 5.562 17 C 0.079 3.921 18 C 0.243 3.757 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.063 3.937 22 N -0.894 5.894 23 Si 0.901 3.099 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.161 0.839 37 H 0.427 0.573 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -5.757 -22.778 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.029 3.971 3 C -0.210 4.210 4 O -0.207 6.207 5 C 0.124 3.876 6 N -0.247 5.247 7 C -0.039 4.039 8 C -0.212 4.212 9 C -0.079 4.079 10 C -0.015 4.015 11 N -0.284 5.284 12 C 0.294 3.706 13 O -0.382 6.382 14 C 0.275 3.725 15 O -0.395 6.395 16 N -0.294 5.294 17 C -0.064 4.064 18 C 0.125 3.875 19 C -0.568 4.568 20 H 0.078 0.922 21 C -0.140 4.140 22 N -0.532 5.532 23 Si 0.728 3.272 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.177 0.823 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.266 0.734 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.752 -5.177 -22.962 23.550 hybrid contribution -0.536 0.362 0.895 1.104 sum -1.288 -4.815 -22.067 22.622 Atomic orbital electron populations 1.22219 0.94886 1.02874 1.02677 1.22340 0.94425 0.92746 0.87635 1.21926 1.02049 0.93845 1.03164 1.86314 1.80170 1.15446 1.38812 1.19588 0.93211 0.85243 0.89539 1.67271 1.21525 1.12845 1.23053 1.22360 0.94848 0.87650 0.99061 1.21930 1.04163 1.01807 0.93269 1.21767 0.95239 0.92204 0.98645 1.17796 1.05471 0.92681 0.85519 1.43037 1.64134 1.18605 1.02641 1.21031 0.76716 0.87199 0.85676 1.90641 1.44817 1.15619 1.87146 1.19460 0.81709 0.87062 0.84281 1.90760 1.47438 1.14852 1.86485 1.48120 1.59944 1.14613 1.06710 1.22037 0.99401 0.81698 1.03269 1.19518 0.97795 0.92946 0.77286 1.21379 0.97387 1.31566 1.06462 0.92236 1.24926 0.96587 0.96137 0.96321 1.69927 1.26820 1.41787 1.14712 0.86453 0.82795 0.79247 0.78698 1.20544 1.21005 1.19819 0.91156 0.92044 0.91789 0.89321 0.91753 0.90528 0.91317 0.82314 0.84170 0.82120 0.73386 0.93105 0.91057 0.90089 0.94087 0.93517 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 9.53 37.16 0.35 -1.28 16 2 C 0.08 0.88 3.11 -26.73 -0.08 0.79 16 3 C -0.15 -1.30 9.56 37.15 0.36 -0.94 16 4 O -0.30 -3.95 9.31 -18.87 -0.18 -4.12 16 5 C 0.31 4.08 7.48 -16.92 -0.13 3.95 16 6 N -0.52 -6.17 8.65 -13.15 -0.11 -6.28 16 7 C 0.12 1.10 11.17 -17.53 -0.20 0.90 16 8 C -0.19 -1.81 10.10 -39.46 -0.40 -2.21 16 9 C -0.05 -0.63 8.83 -39.12 -0.35 -0.97 16 10 C 0.08 1.15 6.38 -83.40 -0.53 0.62 16 11 N -0.64 -9.73 5.20 -10.08 -0.05 -9.79 16 12 C 0.51 8.90 7.63 -11.64 -0.09 8.81 16 13 O -0.51 -8.66 10.59 5.46 0.06 -8.60 16 14 C 0.49 10.48 7.72 -11.64 -0.09 10.39 16 15 O -0.52 -12.40 16.12 5.49 0.09 -12.31 16 16 N -0.56 -12.29 2.86 -183.52 -0.52 -12.81 16 17 C 0.08 1.41 9.26 59.85 0.55 1.97 16 18 C 0.24 6.28 5.09 -5.20 -0.03 6.25 16 19 C -0.53 -14.91 9.39 -34.44 -0.32 -15.24 16 20 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 21 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 23 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 0.90 6.99 -51.93 -0.36 0.54 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.16 2.04 6.10 -52.49 -0.32 1.72 16 37 H 0.43 6.38 8.01 -40.82 -0.33 6.05 16 38 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 39 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 40 H 0.08 1.40 5.86 -51.93 -0.30 1.10 16 41 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 42 H 0.05 1.33 7.51 -51.93 -0.39 0.94 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -32.24 367.36 -6.40 -38.64 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.89 Total: 3.71 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -1.04 Total: 14.71 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.05 Total: -54.28 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.03 Total: -25.03 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.24 -6.40 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283309240.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.149 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds