Wall clock time and date at job start Tue Mar 31 2020 12:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47528 * 2 1 4 4 O 1.42900 * 109.47265 * 120.00052 * 2 1 3 5 5 C 1.35979 * 117.00311 * 154.88945 * 4 2 1 6 6 C 1.38711 * 119.98954 * 185.00503 * 5 4 2 7 7 C 1.38095 * 120.01333 * 179.76675 * 6 5 4 8 8 C 1.38833 * 119.98794 * 0.50966 * 7 6 5 9 9 N 1.40156 * 120.01465 * 179.71989 * 8 7 6 10 10 C 1.34777 * 119.99800 * 215.90287 * 9 8 7 11 11 O 1.21587 * 120.00051 * 355.21497 * 10 9 8 12 12 N 1.34773 * 119.99722 * 175.21179 * 10 9 8 13 13 C 1.46499 * 120.00192 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47572 * 180.02562 * 13 12 10 15 15 O 1.21291 * 119.99546 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00106 * 180.02562 * 14 13 12 17 17 C 1.37098 * 119.99883 * 179.97438 * 16 14 13 18 18 H 1.07994 * 119.99860 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99860 * 179.97438 * 17 16 14 20 20 N 1.31412 * 120.00486 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99895 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47377 * 89.99707 * 21 19 17 23 23 H 1.48501 * 109.46945 * 210.00119 * 21 19 17 24 24 H 1.48495 * 109.47131 * 329.99769 * 21 19 17 25 25 C 1.38834 * 119.96915 * 359.74638 * 8 7 6 26 26 C 1.38097 * 119.98555 * 359.97438 * 25 8 7 27 27 H 1.09000 * 109.47429 * 59.99616 * 1 2 3 28 28 H 1.09003 * 109.47593 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47237 * 299.99948 * 1 2 3 30 30 H 1.08999 * 109.47237 * 240.00052 * 2 1 3 31 31 H 1.08993 * 109.47494 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47078 * 300.00599 * 3 2 1 33 33 H 1.08999 * 109.46819 * 59.99795 * 3 2 1 34 34 H 1.07997 * 119.99294 * 0.02562 * 6 5 4 35 35 H 1.08001 * 120.00665 * 180.23121 * 7 6 5 36 36 H 0.96997 * 119.99853 * 35.90628 * 9 8 7 37 37 H 0.96997 * 120.00379 * 359.97438 * 12 10 9 38 38 H 1.09004 * 109.47142 * 300.00283 * 13 12 10 39 39 H 1.09001 * 109.47257 * 59.99812 * 13 12 10 40 40 H 0.97000 * 119.99948 * 0.02562 * 16 14 13 41 41 H 0.96997 * 120.00726 * 180.02562 * 20 19 17 42 42 H 1.08003 * 120.00629 * 179.97438 * 25 8 7 43 43 H 1.07998 * 119.99052 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2464 -1.2271 1.0971 6 6 3.7283 -1.9839 2.1549 7 6 4.9858 -2.5502 2.0827 8 6 5.7718 -2.3531 0.9554 9 7 7.0504 -2.9227 0.8839 10 6 8.0516 -2.2569 0.2751 11 8 7.8268 -1.2029 -0.2878 12 7 9.3021 -2.7595 0.2902 13 6 10.3906 -2.0356 -0.3711 14 6 11.6764 -2.8048 -0.2097 15 8 11.6828 -3.8547 0.3976 16 7 12.8191 -2.3261 -0.7401 17 6 13.9890 -3.0256 -0.5928 18 1 13.9947 -3.9604 -0.0521 19 6 15.1670 -2.5324 -1.1401 20 7 15.1598 -1.3956 -1.7993 21 14 16.7608 -3.4858 -0.9400 22 1 16.9196 -4.4287 -2.0762 23 1 17.9047 -2.5391 -0.9188 24 1 16.7252 -4.2477 0.3341 25 6 5.2909 -1.5912 -0.1008 26 6 4.0311 -1.0302 -0.0298 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1184 -2.1337 3.0335 35 1 5.3594 -3.1425 2.9048 36 1 7.2146 -3.7961 1.2726 37 1 9.4815 -3.6002 0.7396 38 1 10.1632 -1.9272 -1.4316 39 1 10.4978 -1.0492 0.0802 40 1 12.8140 -1.4863 -1.2254 41 1 15.9821 -1.0514 -2.1818 42 1 5.9021 -1.4371 -0.9779 43 1 3.6571 -0.4371 -0.8512 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348805251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:02 Heat of formation + Delta-G solvation = -100.885984 kcal Electronic energy + Delta-G solvation = -25543.932070 eV Core-core repulsion = 21588.641210 eV Total energy + Delta-G solvation = -3955.290860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82455 -40.95988 -40.13181 -38.63880 -36.26328 -35.56711 -35.33853 -33.89539 -33.36592 -31.92991 -30.18306 -28.64916 -28.08654 -26.37248 -24.42981 -23.79695 -21.93007 -21.74727 -21.36760 -20.12890 -19.67700 -19.26142 -18.52194 -17.46128 -17.10910 -16.67795 -16.57836 -16.37062 -16.29110 -15.81329 -15.57564 -15.55803 -15.21782 -15.04821 -14.48155 -14.27297 -13.97885 -13.77817 -13.71848 -13.54115 -13.45149 -13.29821 -13.10687 -12.90975 -12.79553 -12.45398 -12.20916 -12.12416 -11.94433 -11.61166 -11.56739 -11.33224 -10.82638 -10.56187 -10.23749 -10.08418 -9.96532 -8.67058 -8.50825 -6.01111 0.33263 0.40287 1.36803 1.41658 1.47391 1.57181 1.89043 2.00463 2.27479 2.29431 2.82403 2.99801 3.16496 3.24680 3.82277 3.88219 3.94674 4.03850 4.18167 4.19987 4.28119 4.41241 4.43902 4.45433 4.55755 4.68666 4.74028 4.82301 4.89587 5.00258 5.10819 5.19997 5.24310 5.27342 5.33889 5.38650 5.43646 5.48244 5.86105 5.92033 5.93330 6.47947 6.50674 6.90955 7.03650 7.38402 7.45962 7.94323 8.65965 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.037793 B = 0.001840 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.706872 B =15213.971463 C =15801.824679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.179 4.179 4 O -0.322 6.322 5 C 0.107 3.893 6 C -0.137 4.137 7 C -0.098 4.098 8 C 0.111 3.889 9 N -0.671 5.671 10 C 0.705 3.295 11 O -0.613 6.613 12 N -0.717 5.717 13 C 0.142 3.858 14 C 0.434 3.566 15 O -0.623 6.623 16 N -0.559 5.559 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.010 4.010 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.270 1.270 25 C -0.097 4.097 26 C -0.194 4.194 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.422 0.578 37 H 0.413 0.587 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.399 0.601 41 H 0.280 0.720 42 H 0.122 0.878 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.914 1.841 4.092 27.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 C -0.237 4.237 4 O -0.237 6.237 5 C 0.061 3.939 6 C -0.156 4.156 7 C -0.118 4.118 8 C 0.017 3.983 9 N -0.321 5.321 10 C 0.405 3.595 11 O -0.493 6.493 12 N -0.374 5.374 13 C 0.013 3.987 14 C 0.220 3.780 15 O -0.512 6.512 16 N -0.194 5.194 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.211 4.211 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.196 1.196 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.117 4.117 26 C -0.213 4.213 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.261 0.739 37 H 0.251 0.749 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.233 0.767 41 H 0.089 0.911 42 H 0.140 0.860 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -26.992 2.211 4.034 27.381 hybrid contribution 1.401 -0.479 -0.249 1.502 sum -25.591 1.731 3.785 25.927 Atomic orbital electron populations 1.21865 0.90905 1.03381 1.03979 1.22683 0.96549 0.92700 0.86907 1.22382 1.01426 0.95878 1.03980 1.86107 1.29077 1.68441 1.40026 1.19130 0.85218 0.94615 0.94903 1.20465 0.96491 0.99709 0.98985 1.20951 0.93749 1.01153 0.95947 1.17622 0.84716 1.00686 0.95277 1.42310 1.06744 1.22398 1.60609 1.15887 0.80637 0.83219 0.79761 1.90888 1.83232 1.24726 1.50427 1.44650 1.05568 1.27697 1.59523 1.20620 0.83702 0.95025 0.99333 1.20389 0.85836 0.87594 0.84131 1.90471 1.86504 1.26337 1.47845 1.41827 1.06665 1.22810 1.48117 1.19745 0.85847 1.06193 1.34913 0.89496 1.26125 1.02489 0.97125 0.95376 1.69677 1.30531 1.20067 1.35296 0.84862 0.76457 0.77762 0.78864 1.19581 1.19721 1.19447 1.21098 0.94848 0.97536 0.98254 1.21263 0.95095 1.05448 0.99538 0.88601 0.91743 0.91532 0.90589 0.93207 0.89124 0.91573 0.82931 0.82260 0.73942 0.74924 0.88743 0.88874 0.76679 0.91079 0.85987 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.56 71.98 0.69 -0.70 16 2 C 0.07 0.95 2.84 30.59 0.09 1.04 16 3 C -0.18 -2.37 9.18 71.98 0.66 -1.71 16 4 O -0.32 -6.25 9.80 -93.31 -0.91 -7.17 16 5 C 0.11 2.26 6.60 22.50 0.15 2.41 16 6 C -0.14 -2.57 9.98 22.35 0.22 -2.35 16 7 C -0.10 -1.82 9.96 22.38 0.22 -1.60 16 8 C 0.11 2.68 6.29 38.09 0.24 2.92 16 9 N -0.67 -15.94 5.35 -317.06 -1.70 -17.64 16 10 C 0.70 22.02 8.41 179.06 1.51 23.52 16 11 O -0.61 -22.98 13.82 -3.99 -0.06 -23.04 16 12 N -0.72 -22.84 5.53 -482.30 -2.67 -25.51 16 13 C 0.14 5.07 6.15 85.63 0.53 5.59 16 14 C 0.43 19.62 7.85 87.66 0.69 20.31 16 15 O -0.62 -31.51 15.24 -3.06 -0.05 -31.56 16 16 N -0.56 -27.70 5.29 -307.00 -1.62 -29.33 16 17 C -0.34 -18.43 9.68 84.04 0.81 -17.61 16 18 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 19 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 20 N -0.92 -48.33 13.05 21.66 0.28 -48.05 16 21 Si 1.00 41.43 29.55 68.60 2.03 43.46 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 C -0.10 -2.57 8.69 22.38 0.19 -2.38 16 26 C -0.19 -4.38 8.25 22.35 0.18 -4.19 16 27 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.08 1.03 6.29 -2.39 -0.02 1.01 16 31 H 0.05 0.82 6.94 -2.39 -0.02 0.81 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 36 H 0.42 7.25 8.84 -92.71 -0.82 6.43 16 37 H 0.41 12.59 7.46 -92.71 -0.69 11.90 16 38 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 41 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 42 H 0.12 3.76 6.27 -2.91 -0.02 3.74 16 43 H 0.14 2.70 5.43 -2.91 -0.02 2.69 16 Total: -1.00 -68.37 365.60 0.79 -67.57 By element: Atomic # 1 Polarization: 47.23 SS G_CDS: -1.16 Total: 46.07 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 6.65 Total: 25.19 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -5.70 Total: -120.53 kcal Atomic # 8 Polarization: -60.75 SS G_CDS: -1.02 Total: -61.76 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -68.37 0.79 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348805251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.314 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds