Wall clock time and date at job start Tue Mar 31 2020 13:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47067 * 2 1 4 4 C 1.50705 * 109.47057 * 239.99700 * 2 1 3 5 5 H 1.07996 * 119.99577 * 239.99820 * 4 2 1 6 6 C 1.37878 * 119.99995 * 60.00670 * 4 2 1 7 7 N 1.31517 * 119.99736 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00059 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46773 * 269.99764 * 8 6 4 10 10 H 1.48497 * 109.47097 * 29.99342 * 8 6 4 11 11 H 1.48501 * 109.46952 * 149.99794 * 8 6 4 12 12 N 1.46904 * 109.46915 * 120.00200 * 2 1 3 13 13 C 1.46896 * 111.00141 * 58.95053 * 12 2 1 14 14 C 1.46901 * 110.99488 * 294.99910 * 12 2 1 15 15 C 1.53010 * 109.46828 * 190.00310 * 14 12 2 16 16 C 1.50697 * 109.47002 * 179.97438 * 15 14 12 17 17 O 1.21290 * 120.00337 * 0.02562 * 16 15 14 18 18 N 1.34774 * 119.99880 * 179.97438 * 16 15 14 19 19 C 1.39929 * 119.99776 * 175.37578 * 18 16 15 20 20 C 1.38870 * 120.06923 * 214.80691 * 19 18 16 21 21 C 1.38107 * 119.92950 * 179.77066 * 20 19 18 22 22 C 1.38278 * 120.07218 * 0.50901 * 21 20 19 23 23 N 1.48025 * 119.93360 * 179.71933 * 22 21 20 24 24 O 1.21795 * 119.99875 * 180.02562 * 23 22 21 25 25 O 1.21796 * 119.99695 * 0.02709 * 23 22 21 26 26 C 1.38283 * 120.13752 * 359.74652 * 22 21 20 27 27 C 1.38105 * 120.07155 * 359.97438 * 26 22 21 28 28 H 1.08999 * 109.47254 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47423 * 300.00312 * 1 2 3 30 30 H 1.09003 * 109.46737 * 60.00171 * 1 2 3 31 31 H 0.97003 * 119.99870 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47049 * 59.99995 * 13 12 2 33 33 H 1.08998 * 109.47077 * 180.02562 * 13 12 2 34 34 H 1.08998 * 109.47194 * 300.00165 * 13 12 2 35 35 H 1.09007 * 109.47400 * 309.99849 * 14 12 2 36 36 H 1.08999 * 109.47601 * 70.00501 * 14 12 2 37 37 H 1.09001 * 109.46741 * 299.99464 * 15 14 12 38 38 H 1.08999 * 109.46874 * 59.99745 * 15 14 12 39 39 H 0.96997 * 119.99889 * 355.37813 * 18 16 15 40 40 H 1.08012 * 120.03696 * 0.02562 * 20 19 18 41 41 H 1.08010 * 119.96681 * 180.23250 * 21 20 19 42 42 H 1.08004 * 119.96283 * 180.02562 * 26 22 21 43 43 H 1.08005 * 120.03743 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.6306 -0.5441 -4.4117 10 1 2.4881 -2.5654 -3.7121 11 1 1.3445 -0.9490 -5.1123 12 7 2.0196 -0.6926 1.1995 13 6 1.5282 -2.0761 1.2460 14 6 1.6486 0.0392 2.4180 15 6 2.3788 -0.5662 3.6187 16 6 1.9987 0.1848 4.8686 17 8 1.2200 1.1126 4.8056 18 7 2.5232 -0.1752 6.0568 19 6 2.2468 0.5808 7.2014 20 6 3.2157 0.7347 8.1843 21 6 2.9415 1.4854 9.3106 22 6 1.7001 2.0747 9.4652 23 7 1.4074 2.8735 10.6766 24 8 0.3143 3.3927 10.8141 25 8 2.2597 3.0115 11.5356 26 6 0.7314 1.9190 8.4907 27 6 1.0014 1.1743 7.3594 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7083 1.1609 -3.4845 32 1 1.8761 -2.6151 0.3647 33 1 1.9052 -2.5655 2.1440 34 1 0.4384 -2.0742 1.2639 35 1 1.9297 1.0871 2.3125 36 1 0.5721 -0.0345 2.5726 37 1 2.0977 -1.6141 3.7243 38 1 3.4553 -0.4926 3.4641 39 1 3.0923 -0.9583 6.1184 40 1 4.1842 0.2712 8.0661 41 1 3.6959 1.6086 10.0737 42 1 -0.2370 2.3809 8.6142 43 1 0.2442 1.0527 6.5989 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411316670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:07 Heat of formation + Delta-G solvation = -21.594047 kcal Electronic energy + Delta-G solvation = -25924.122212 eV Core-core repulsion = 21972.269709 eV Total energy + Delta-G solvation = -3951.852503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.25561 -41.87341 -39.97036 -38.87981 -37.68294 -36.20730 -35.02378 -32.95117 -32.47148 -31.64449 -29.95617 -27.82518 -27.23392 -26.76152 -24.67270 -24.24111 -23.08917 -21.63972 -20.80121 -20.43248 -19.76526 -19.03340 -18.60822 -18.31907 -18.18217 -17.07933 -16.91599 -16.20448 -16.08677 -15.88684 -15.44269 -15.18191 -15.02564 -14.76884 -14.58748 -14.34401 -14.18958 -13.79431 -13.31561 -13.10066 -12.85121 -12.72168 -12.69352 -12.63453 -12.55470 -12.40967 -12.34471 -12.31588 -12.02866 -11.90813 -11.87737 -11.56616 -11.11255 -10.89201 -10.49357 -10.44254 -9.75460 -8.89119 -8.09972 -6.21384 -1.28942 -0.06795 0.18446 0.38532 1.35087 1.44453 1.44954 1.54971 1.70360 2.27536 2.43856 3.19575 3.28134 3.37915 3.47717 3.67452 3.78403 3.82130 4.03801 4.18806 4.26909 4.41181 4.57978 4.63142 4.65567 4.72044 4.73662 4.82227 4.88067 4.90889 4.97002 4.97860 5.05457 5.17558 5.19637 5.27543 5.50928 5.55354 5.70718 5.78384 6.17787 6.18888 6.46008 6.47614 6.70867 6.91811 6.93187 7.48101 8.96411 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.036586 B = 0.001947 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.135268 B =14374.457755 C =14744.297413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.511 4.511 5 H 0.065 0.935 6 C 0.005 3.995 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.264 1.264 11 H -0.289 1.289 12 N -0.539 5.539 13 C 0.031 3.969 14 C 0.070 3.930 15 C -0.121 4.121 16 C 0.522 3.478 17 O -0.552 6.552 18 N -0.656 5.656 19 C 0.206 3.794 20 C -0.128 4.128 21 C -0.027 4.027 22 C -0.085 4.085 23 N 0.035 4.965 24 O -0.205 6.205 25 O -0.167 6.167 26 C -0.038 4.038 27 C -0.139 4.139 28 H 0.035 0.965 29 H 0.018 0.982 30 H 0.058 0.942 31 H 0.260 0.740 32 H 0.057 0.943 33 H 0.089 0.911 34 H 0.011 0.989 35 H 0.048 0.952 36 H 0.021 0.979 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.441 0.559 40 H 0.194 0.806 41 H 0.178 0.822 42 H 0.154 0.846 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.489 -6.533 22.976 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.549 4.549 5 H 0.083 0.917 6 C -0.193 4.193 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.215 1.215 12 N -0.262 5.262 13 C -0.117 4.117 14 C -0.059 4.059 15 C -0.160 4.160 16 C 0.312 3.688 17 O -0.428 6.428 18 N -0.303 5.303 19 C 0.108 3.892 20 C -0.148 4.148 21 C -0.047 4.047 22 C -0.169 4.169 23 N 0.548 4.452 24 O -0.412 6.412 25 O -0.384 6.384 26 C -0.058 4.058 27 C -0.160 4.160 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.030 0.970 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.282 0.718 40 H 0.211 0.789 41 H 0.195 0.805 42 H 0.171 0.829 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.488 -6.188 22.089 23.839 hybrid contribution -1.086 0.240 -0.740 1.336 sum 5.402 -5.948 21.349 22.811 Atomic orbital electron populations 1.22200 1.00697 0.99222 0.99654 1.19049 0.89777 0.92894 0.87627 0.98178 1.21400 1.30445 1.12512 0.90556 0.91701 1.25778 0.95495 0.95872 1.02162 1.70041 1.38016 1.24432 1.23943 0.85489 0.77772 0.79234 0.78712 1.20372 1.18801 1.21462 1.62257 1.59467 1.02972 1.01542 1.22350 0.97008 0.89864 1.02451 1.21688 0.96854 0.97429 0.89925 1.21614 1.04540 1.01355 0.88505 1.21328 0.78904 0.83258 0.85320 1.90752 1.34680 1.30716 1.86677 1.43593 1.51375 1.30525 1.04819 1.18348 0.92511 0.91228 0.87105 1.21305 1.00486 1.00872 0.92155 1.21167 0.93567 0.91421 0.98495 1.21291 1.00114 1.06758 0.88751 1.43897 0.99803 0.99082 1.02393 1.94545 1.11212 1.50371 1.85039 1.94488 1.41679 1.65397 1.36886 1.20976 0.99389 0.94828 0.90582 1.21331 0.97523 0.99833 0.97351 0.94558 0.96283 0.92293 0.93119 0.92401 0.89216 0.97000 0.93335 0.96123 0.85375 0.85357 0.71771 0.78873 0.80467 0.82864 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.69 8.28 71.98 0.60 -7.09 16 2 C 0.21 10.57 2.34 44.17 0.10 10.67 16 3 H 0.00 0.02 8.03 -2.39 -0.02 0.00 16 4 C -0.51 -26.99 7.94 25.60 0.20 -26.79 16 5 H 0.06 3.33 6.75 -2.91 -0.02 3.31 16 6 C 0.01 0.27 5.30 84.65 0.45 0.72 16 7 N -0.92 -53.02 11.32 21.45 0.24 -52.78 16 8 Si 0.96 42.59 29.54 68.60 2.03 44.61 16 9 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 12 N -0.54 -20.65 4.74 -901.43 -4.27 -24.93 16 13 C 0.03 1.02 8.70 127.69 1.11 2.13 16 14 C 0.07 2.27 3.69 86.31 0.32 2.59 16 15 C -0.12 -2.27 5.63 29.85 0.17 -2.10 16 16 C 0.52 9.98 7.67 87.66 0.67 10.65 16 17 O -0.55 -15.86 13.42 -3.06 -0.04 -15.90 16 18 N -0.66 -6.76 5.34 -303.51 -1.62 -8.38 16 19 C 0.21 2.64 6.30 38.15 0.24 2.88 16 20 C -0.13 -0.97 9.97 22.39 0.22 -0.74 16 21 C -0.03 -0.30 9.55 22.25 0.21 -0.09 16 22 C -0.08 -1.54 6.85 36.39 0.25 -1.29 16 23 N 0.04 0.83 4.45 -46.41 -0.21 0.62 16 24 O -0.20 -5.48 18.44 18.89 0.35 -5.13 16 25 O -0.17 -3.95 18.44 18.89 0.35 -3.61 16 26 C -0.04 -0.69 9.55 22.25 0.21 -0.48 16 27 C -0.14 -2.51 8.70 22.39 0.19 -2.31 16 28 H 0.04 1.67 6.39 -2.39 -0.02 1.65 16 29 H 0.02 0.84 6.75 -2.39 -0.02 0.82 16 30 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.47 16 32 H 0.06 2.10 6.53 -2.39 -0.02 2.08 16 33 H 0.09 2.03 6.30 -2.39 -0.02 2.02 16 34 H 0.01 0.40 6.28 -2.39 -0.02 0.38 16 35 H 0.05 1.80 7.96 -2.38 -0.02 1.78 16 36 H 0.02 0.73 6.89 -2.39 -0.02 0.71 16 37 H 0.13 1.68 6.47 -2.39 -0.02 1.67 16 38 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.44 0.69 8.82 -92.71 -0.82 -0.13 16 40 H 0.19 -0.13 8.06 -2.90 -0.02 -0.16 16 41 H 0.18 1.28 7.60 -2.91 -0.02 1.25 16 42 H 0.15 2.72 7.60 -2.91 -0.02 2.70 16 43 H 0.15 3.16 6.22 -2.91 -0.02 3.15 16 Total: -1.00 -72.70 356.66 2.02 -70.68 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 0.25 Total: 6.07 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.95 Total: -11.25 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -5.86 Total: -85.46 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.66 Total: -24.64 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -72.70 2.02 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411316670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.084 kcal (2) G-P(sol) polarization free energy of solvation -72.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds