Wall clock time and date at job start Tue Mar 31 2020 13:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47049 * 2 1 4 4 C 1.50706 * 109.47204 * 120.00141 * 2 1 3 5 5 H 1.07997 * 119.99721 * 119.99671 * 4 2 1 6 6 C 1.37873 * 119.99907 * 300.00238 * 4 2 1 7 7 N 1.31513 * 120.00086 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99719 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47256 * 89.99735 * 8 6 4 10 10 H 1.48506 * 109.46862 * 209.99376 * 8 6 4 11 11 H 1.48499 * 109.47514 * 329.99192 * 8 6 4 12 12 N 1.46900 * 109.46836 * 239.99950 * 2 1 3 13 13 C 1.46902 * 111.00146 * 306.04600 * 12 2 1 14 14 C 1.46903 * 110.99793 * 70.00235 * 12 2 1 15 15 C 1.53003 * 109.47129 * 169.99996 * 14 12 2 16 16 C 1.50693 * 109.47191 * 180.02562 * 15 14 12 17 17 O 1.21286 * 120.00105 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00220 * 179.97438 * 16 15 14 19 19 C 1.39918 * 120.00242 * 175.37122 * 18 16 15 20 20 C 1.38876 * 120.07146 * 214.80898 * 19 18 16 21 21 C 1.38118 * 119.92632 * 179.76937 * 20 19 18 22 22 C 1.38275 * 120.06967 * 0.51415 * 21 20 19 23 23 N 1.48028 * 119.92715 * 179.72333 * 22 21 20 24 24 O 1.21800 * 119.99691 * 180.02562 * 23 22 21 25 25 O 1.21799 * 119.99869 * 0.02562 * 23 22 21 26 26 C 1.38285 * 120.14494 * 359.73694 * 22 21 20 27 27 C 1.38110 * 120.06822 * 0.02562 * 26 22 21 28 28 H 1.08994 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46855 * 300.00018 * 1 2 3 30 30 H 1.08995 * 109.46949 * 59.99997 * 1 2 3 31 31 H 0.96998 * 119.99766 * 180.02562 * 7 6 4 32 32 H 1.09007 * 109.46974 * 183.95415 * 13 12 2 33 33 H 1.08999 * 109.47303 * 303.95047 * 13 12 2 34 34 H 1.08999 * 109.46854 * 63.95668 * 13 12 2 35 35 H 1.08992 * 109.47482 * 50.00038 * 14 12 2 36 36 H 1.08995 * 109.46995 * 289.99498 * 14 12 2 37 37 H 1.08997 * 109.47337 * 59.99525 * 15 14 12 38 38 H 1.09011 * 109.46812 * 299.99992 * 15 14 12 39 39 H 0.97001 * 119.99640 * 355.37815 * 18 16 15 40 40 H 1.07996 * 120.03757 * 0.02562 * 20 19 18 41 41 H 1.07997 * 119.96212 * 180.23153 * 21 20 19 42 42 H 1.08002 * 119.96255 * 180.02562 * 26 22 21 43 43 H 1.08004 * 120.03555 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.6306 -0.5441 4.4118 10 1 1.3445 -0.9491 5.1122 11 1 2.4880 -2.5655 3.7121 12 7 2.0196 -0.6925 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7529 0.0973 -2.4090 15 6 2.4884 -0.5256 -3.5973 16 6 2.2152 0.2849 -4.8380 17 8 1.5021 1.2641 -4.7779 18 7 2.7634 -0.0782 -6.0145 19 6 2.4335 0.6156 -7.1839 20 6 2.3459 -0.0613 -8.3934 21 6 2.0153 0.6257 -9.5451 22 6 1.7822 1.9878 -9.4966 23 7 1.4341 2.7221 -10.7339 24 8 1.2290 3.9220 -10.6927 25 8 1.3529 2.1263 -11.7931 26 6 1.8737 2.6657 -8.2947 27 6 2.1990 1.9836 -7.1387 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.7096 1.1616 3.4844 32 1 1.8664 -2.5521 -2.1649 33 1 1.6466 -2.5988 -0.3992 34 1 0.3555 -1.9520 -1.4399 35 1 2.1025 1.1189 -2.2604 36 1 0.6814 0.1053 -2.6087 37 1 2.1388 -1.5472 -3.7460 38 1 3.5600 -0.5337 -3.3976 39 1 3.3866 -0.8207 -6.0505 40 1 2.5319 -1.1244 -8.4327 41 1 1.9434 0.0993 -10.4853 42 1 1.6906 3.7295 -8.2601 43 1 2.2708 2.5136 -6.2003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411316672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:10 Heat of formation + Delta-G solvation = -22.228181 kcal Electronic energy + Delta-G solvation = -25915.943291 eV Core-core repulsion = 21964.063289 eV Total energy + Delta-G solvation = -3951.880001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.25492 -41.87323 -39.96821 -38.87162 -37.68250 -36.20869 -35.03000 -32.96258 -32.47156 -31.65351 -29.92165 -27.77829 -27.27516 -26.79972 -24.67172 -24.22759 -23.07576 -21.63213 -20.82291 -20.43274 -19.76507 -19.03438 -18.60816 -18.31627 -18.18475 -17.08329 -16.89550 -16.28987 -15.98016 -15.90431 -15.35016 -15.30688 -15.03055 -14.80845 -14.46306 -14.36173 -14.21234 -13.79797 -13.32488 -13.10378 -12.84916 -12.70258 -12.69096 -12.67136 -12.53214 -12.38573 -12.34590 -12.31619 -12.06775 -11.89990 -11.88183 -11.58516 -11.11741 -10.90983 -10.48831 -10.44285 -9.75462 -8.89868 -8.09613 -6.20969 -1.29018 -0.06881 0.18335 0.38452 1.35389 1.44597 1.45109 1.55185 1.70218 2.27264 2.44073 3.19764 3.28011 3.37800 3.47661 3.67428 3.78483 3.81624 4.04944 4.17283 4.27778 4.41179 4.59066 4.62221 4.65367 4.72375 4.73490 4.80000 4.87510 4.90814 4.97062 4.97744 5.05369 5.17473 5.19295 5.26818 5.50920 5.53133 5.69961 5.78342 6.17801 6.20786 6.46789 6.47536 6.70031 6.91822 6.93152 7.48471 8.96670 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.037251 B = 0.001949 C = 0.001893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.479782 B =14360.062167 C =14786.400446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.214 3.786 3 H 0.000 1.000 4 C -0.509 4.509 5 H 0.064 0.936 6 C 0.005 3.995 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.539 5.539 13 C 0.031 3.969 14 C 0.070 3.930 15 C -0.120 4.120 16 C 0.522 3.478 17 O -0.552 6.552 18 N -0.656 5.656 19 C 0.206 3.794 20 C -0.127 4.127 21 C -0.027 4.027 22 C -0.085 4.085 23 N 0.035 4.965 24 O -0.206 6.206 25 O -0.166 6.166 26 C -0.038 4.038 27 C -0.140 4.140 28 H 0.037 0.963 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.012 0.988 35 H 0.049 0.951 36 H 0.018 0.982 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.441 0.559 40 H 0.195 0.805 41 H 0.178 0.822 42 H 0.153 0.847 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.964 -7.129 -23.106 24.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.548 4.548 5 H 0.082 0.918 6 C -0.193 4.193 7 N -0.565 5.565 8 Si 0.788 3.212 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.262 5.262 13 C -0.117 4.117 14 C -0.059 4.059 15 C -0.160 4.160 16 C 0.312 3.688 17 O -0.428 6.428 18 N -0.303 5.303 19 C 0.108 3.892 20 C -0.148 4.148 21 C -0.046 4.046 22 C -0.169 4.169 23 N 0.548 4.452 24 O -0.412 6.412 25 O -0.384 6.384 26 C -0.058 4.058 27 C -0.161 4.161 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.036 0.964 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.282 0.718 40 H 0.212 0.788 41 H 0.196 0.804 42 H 0.171 0.829 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.062 -6.726 -22.180 23.957 hybrid contribution -0.856 0.480 0.749 1.235 sum 5.205 -6.247 -21.430 22.921 Atomic orbital electron populations 1.22205 1.00657 0.99307 0.99562 1.19055 0.89795 0.92818 0.87671 0.98198 1.21377 1.30365 1.12479 0.90534 0.91822 1.25772 0.95507 0.95889 1.02143 1.70036 1.38081 1.24406 1.23942 0.85490 0.77768 0.79230 0.78717 1.20388 1.21449 1.18823 1.62254 1.58805 1.03408 1.01737 1.22350 0.96305 0.90641 1.02375 1.21693 0.97173 0.96933 0.90068 1.21604 1.05075 1.00525 0.88775 1.21331 0.77796 0.84551 0.85138 1.90751 1.38181 1.28196 1.85711 1.43594 1.46394 1.35829 1.04501 1.18349 0.92636 0.90723 0.87481 1.21307 1.02337 1.02588 0.88526 1.21171 0.91964 0.89764 1.01730 1.21291 1.17280 0.94313 0.84020 1.43902 0.97105 1.01043 1.03133 1.94548 1.55180 0.98159 1.93349 1.94487 1.55237 1.69643 1.19011 1.20973 0.93379 1.02123 0.89315 1.21337 1.02447 0.93743 0.98571 0.94408 0.92281 0.96468 0.93117 0.89180 0.92517 0.96901 0.93193 0.96372 0.85419 0.85304 0.71760 0.78799 0.80423 0.82912 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.66 8.22 71.98 0.59 -7.07 16 2 C 0.21 10.56 2.31 44.17 0.10 10.67 16 3 H 0.00 0.00 7.93 -2.39 -0.02 -0.01 16 4 C -0.51 -26.95 7.91 25.60 0.20 -26.75 16 5 H 0.06 3.29 7.12 -2.91 -0.02 3.27 16 6 C 0.00 0.27 5.30 84.65 0.45 0.72 16 7 N -0.92 -53.03 11.32 21.45 0.24 -52.79 16 8 Si 0.96 42.63 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 12 N -0.54 -20.64 4.70 -901.45 -4.24 -24.87 16 13 C 0.03 1.02 8.45 127.69 1.08 2.10 16 14 C 0.07 2.28 3.82 86.30 0.33 2.61 16 15 C -0.12 -2.26 5.63 29.85 0.17 -2.10 16 16 C 0.52 10.01 7.67 87.65 0.67 10.68 16 17 O -0.55 -15.91 13.42 -3.05 -0.04 -15.95 16 18 N -0.66 -6.78 5.34 -303.51 -1.62 -8.40 16 19 C 0.21 2.64 6.30 38.16 0.24 2.88 16 20 C -0.13 -0.93 9.97 22.39 0.22 -0.71 16 21 C -0.03 -0.30 9.55 22.25 0.21 -0.08 16 22 C -0.08 -1.53 6.85 36.39 0.25 -1.29 16 23 N 0.04 0.83 4.45 -46.41 -0.21 0.62 16 24 O -0.21 -5.52 18.44 18.89 0.35 -5.17 16 25 O -0.17 -3.91 18.44 18.89 0.35 -3.56 16 26 C -0.04 -0.70 9.55 22.25 0.21 -0.49 16 27 C -0.14 -2.55 8.70 22.39 0.19 -2.35 16 28 H 0.04 1.73 6.41 -2.39 -0.02 1.72 16 29 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 30 H 0.02 0.75 6.91 -2.39 -0.02 0.74 16 31 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 32 H 0.09 2.05 6.47 -2.38 -0.02 2.03 16 33 H 0.06 2.06 6.76 -2.39 -0.02 2.05 16 34 H 0.01 0.42 6.46 -2.39 -0.02 0.41 16 35 H 0.05 1.85 7.89 -2.39 -0.02 1.83 16 36 H 0.02 0.64 7.02 -2.39 -0.02 0.63 16 37 H 0.13 1.70 6.55 -2.39 -0.02 1.68 16 38 H 0.13 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.44 0.71 8.82 -92.71 -0.82 -0.11 16 40 H 0.19 -0.22 8.06 -2.91 -0.02 -0.25 16 41 H 0.18 1.23 7.60 -2.91 -0.02 1.20 16 42 H 0.15 2.76 7.60 -2.91 -0.02 2.73 16 43 H 0.15 3.22 6.23 -2.91 -0.02 3.20 16 Total: -1.00 -72.79 357.55 2.03 -70.76 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.24 Total: 5.89 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: 4.93 Total: -11.19 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -5.82 Total: -85.43 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.66 Total: -24.68 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.79 2.03 -70.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411316672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.531 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds