Wall clock time and date at job start Tue Mar 31 2020 12:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47286 * 2 1 4 4 O 1.42899 * 109.47238 * 119.99606 * 2 1 3 5 5 C 1.35998 * 116.99880 * 83.90688 * 4 2 1 6 6 C 1.38107 * 120.00647 * 354.49079 * 5 4 2 7 7 C 1.39756 * 119.86241 * 179.97438 * 6 5 4 8 8 C 1.47590 * 120.05851 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99982 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99581 * 359.97438 * 8 7 6 11 11 C 1.39731 * 119.88619 * 359.97438 * 7 6 5 12 12 C 1.37743 * 120.01621 * 0.02562 * 11 7 6 13 13 C 1.38985 * 120.13865 * 359.97438 * 12 11 7 14 14 N 1.39628 * 119.94036 * 180.28032 * 13 12 11 15 15 C 1.34782 * 120.00304 * 339.67940 * 14 13 12 16 16 O 1.21586 * 119.99807 * 353.60999 * 15 14 13 17 17 N 1.34776 * 119.99683 * 173.59975 * 15 14 13 18 18 C 1.46508 * 119.99444 * 180.02562 * 17 15 14 19 19 C 1.50705 * 109.46564 * 180.02562 * 18 17 15 20 20 H 1.07998 * 120.00317 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99311 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00625 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99643 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47202 * 59.99717 * 23 21 19 25 25 H 1.48500 * 109.46900 * 180.02562 * 23 21 19 26 26 H 1.48505 * 109.46956 * 300.00037 * 23 21 19 27 27 H 1.09002 * 109.47600 * 299.99895 * 1 2 3 28 28 H 1.09001 * 109.47450 * 60.00558 * 1 2 3 29 29 H 1.09006 * 109.46900 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47170 * 239.99832 * 2 1 3 31 31 H 1.08998 * 109.47365 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46799 * 300.00458 * 3 2 1 33 33 H 1.09002 * 109.46716 * 59.99564 * 3 2 1 34 34 H 1.07992 * 120.06913 * 359.95417 * 6 5 4 35 35 H 0.97001 * 120.00036 * 359.97438 * 9 8 7 36 36 H 0.96999 * 119.99572 * 179.97438 * 9 8 7 37 37 H 1.07996 * 119.99111 * 180.02562 * 11 7 6 38 38 H 1.08006 * 119.93153 * 180.02562 * 12 11 7 39 39 H 0.96998 * 119.99861 * 159.68143 * 14 13 12 40 40 H 0.96990 * 120.00670 * 0.02562 * 17 15 14 41 41 H 1.09004 * 109.46860 * 299.99983 * 18 17 15 42 42 H 1.08996 * 109.47379 * 60.00557 * 18 17 15 43 43 H 0.96994 * 120.00339 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0909 -2.0295 1.1057 6 6 1.6185 -2.7016 -0.0045 7 6 1.7074 -4.0951 -0.0644 8 6 1.2044 -4.8177 -1.2490 9 7 1.2903 -6.1615 -1.3053 10 8 0.7119 -4.2006 -2.1736 11 6 2.2742 -4.8029 0.9987 12 6 2.7438 -4.1277 2.1036 13 6 2.6558 -2.7419 2.1640 14 7 3.1385 -2.0612 3.2835 15 6 3.3053 -2.7154 4.4500 16 8 2.9279 -3.8658 4.5612 17 7 3.8907 -2.0944 5.4932 18 6 4.0725 -2.8057 6.7610 19 6 4.7451 -1.8952 7.7558 20 1 5.0109 -0.8876 7.4720 21 6 5.0210 -2.3485 9.0283 22 7 4.6969 -3.5753 9.3742 23 14 5.8540 -1.2197 10.2618 24 1 5.0085 -0.0194 10.4840 25 1 6.0384 -1.9408 11.5468 26 1 7.1780 -0.8017 9.7348 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.1810 -2.1516 -0.8245 35 1 1.6829 -6.6538 -0.5674 36 1 0.9594 -6.6364 -2.0836 37 1 2.3441 -5.8797 0.9540 38 1 3.1820 -4.6761 2.9244 39 1 3.3537 -1.1174 3.2217 40 1 4.1916 -1.1766 5.4046 41 1 3.1007 -3.1120 7.1483 42 1 4.6927 -3.6870 6.5974 43 1 4.8914 -3.8943 10.2693 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421154909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:52 Heat of formation + Delta-G solvation = -107.784309 kcal Electronic energy + Delta-G solvation = -26586.871466 eV Core-core repulsion = 22631.281473 eV Total energy + Delta-G solvation = -3955.589993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.12625 -40.93450 -40.29289 -38.40366 -36.31901 -35.85588 -34.73864 -34.34746 -33.99397 -31.41649 -30.53717 -28.97206 -28.14851 -25.68011 -24.53935 -24.12947 -22.36054 -21.78120 -21.63398 -19.97775 -19.67937 -18.64479 -18.30286 -17.97894 -17.33186 -16.82838 -16.75092 -16.52828 -16.34759 -15.91911 -15.77503 -15.40668 -15.24222 -14.93984 -14.77622 -14.36356 -14.21736 -14.02494 -13.77194 -13.63026 -13.19317 -13.09847 -12.94132 -12.84946 -12.68068 -12.48172 -12.21382 -11.87794 -11.70104 -11.64146 -11.49409 -11.35672 -10.93668 -10.77595 -10.71142 -9.95310 -9.65692 -8.81094 -8.27628 -6.43554 -0.29265 0.32187 1.44301 1.48550 1.54885 1.60397 1.69001 2.09205 2.15939 2.39703 2.53734 2.82348 3.07780 3.30900 3.71581 3.80274 3.88503 3.96773 4.01134 4.09881 4.16952 4.31855 4.65203 4.69940 4.77592 4.86848 4.89961 4.95217 5.02434 5.10225 5.20332 5.23468 5.27877 5.29858 5.35389 5.46874 5.62103 5.72882 5.83424 5.88702 6.11728 6.34501 6.39361 6.66459 7.09538 7.25768 7.27073 7.52932 8.84127 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015400 B = 0.002825 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.705936 B = 9909.449908 C =11529.389329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.070 3.930 3 C -0.144 4.144 4 O -0.319 6.319 5 C 0.086 3.914 6 C -0.128 4.128 7 C -0.143 4.143 8 C 0.570 3.430 9 N -0.828 5.828 10 O -0.585 6.585 11 C -0.079 4.079 12 C -0.135 4.135 13 C 0.166 3.834 14 N -0.663 5.663 15 C 0.693 3.307 16 O -0.613 6.613 17 N -0.713 5.713 18 C 0.285 3.715 19 C -0.557 4.557 20 H 0.083 0.917 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.065 0.935 34 H 0.151 0.849 35 H 0.416 0.584 36 H 0.414 0.586 37 H 0.163 0.837 38 H 0.149 0.851 39 H 0.423 0.577 40 H 0.406 0.594 41 H -0.009 1.009 42 H -0.005 1.005 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.920 4.376 -22.388 23.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.015 3.985 3 C -0.201 4.201 4 O -0.234 6.234 5 C 0.038 3.962 6 C -0.148 4.148 7 C -0.148 4.148 8 C 0.356 3.644 9 N -0.393 5.393 10 O -0.467 6.467 11 C -0.099 4.099 12 C -0.156 4.156 13 C 0.067 3.933 14 N -0.309 5.309 15 C 0.393 3.607 16 O -0.494 6.494 17 N -0.366 5.366 18 C 0.162 3.838 19 C -0.595 4.595 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.211 1.211 26 H -0.187 1.187 27 H 0.083 0.917 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.168 0.832 35 H 0.249 0.751 36 H 0.247 0.753 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.260 0.740 40 H 0.242 0.758 41 H 0.009 0.991 42 H 0.013 0.987 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.417 3.912 -22.340 23.318 hybrid contribution 0.442 0.428 0.801 1.010 sum -4.975 4.339 -21.539 22.528 Atomic orbital electron populations 1.22390 0.94643 1.02629 1.04000 1.22729 0.94844 0.94519 0.86444 1.21872 1.02150 0.91996 1.04090 1.86073 1.81915 1.14642 1.40779 1.18292 0.99578 0.83778 0.94572 1.21188 1.01742 0.94248 0.97656 1.19669 1.05602 0.93656 0.95868 1.18146 0.77290 0.83339 0.85602 1.43572 1.64200 1.06101 1.25414 1.90777 1.47338 1.68658 1.39946 1.21315 0.96424 1.01155 0.90984 1.21523 1.01999 0.92085 1.00022 1.17392 0.97986 0.91875 0.86000 1.42293 1.67018 1.14208 1.07362 1.16189 0.79219 0.84705 0.80545 1.90773 1.57276 1.18149 1.83242 1.45393 1.61669 1.17540 1.12012 1.18503 0.94554 0.91892 0.78823 1.21562 1.40684 1.00132 0.97144 0.89924 1.25988 0.96020 0.96822 1.00430 1.70112 1.47443 1.18096 1.21008 0.85246 0.79061 0.78195 0.76952 1.18841 1.21107 1.18735 0.91702 0.88877 0.93171 0.90410 0.91579 0.88343 0.91559 0.83174 0.75143 0.75306 0.81980 0.83392 0.73962 0.75815 0.99086 0.98727 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 9.14 71.98 0.66 -2.26 16 2 C 0.07 1.20 2.85 30.59 0.09 1.29 16 3 C -0.14 -1.82 9.56 71.98 0.69 -1.13 16 4 O -0.32 -7.40 9.15 -93.53 -0.86 -8.26 16 5 C 0.09 2.23 6.60 22.55 0.15 2.38 16 6 C -0.13 -3.14 7.74 22.61 0.17 -2.96 16 7 C -0.14 -3.34 5.87 -20.08 -0.12 -3.45 16 8 C 0.57 12.56 8.04 86.71 0.70 13.25 16 9 N -0.83 -10.54 8.82 -175.78 -1.55 -12.09 16 10 O -0.59 -17.00 17.17 -3.98 -0.07 -17.07 16 11 C -0.08 -1.78 9.53 22.51 0.21 -1.57 16 12 C -0.14 -4.05 8.75 22.33 0.20 -3.85 16 13 C 0.17 4.99 6.51 38.39 0.25 5.24 16 14 N -0.66 -20.68 5.31 -316.82 -1.68 -22.37 16 15 C 0.69 27.91 8.39 179.05 1.50 29.42 16 16 O -0.61 -29.05 13.27 -3.99 -0.05 -29.10 16 17 N -0.71 -29.62 5.55 -482.27 -2.68 -32.29 16 18 C 0.29 15.17 5.43 85.63 0.46 15.64 16 19 C -0.56 -29.57 9.28 25.60 0.24 -29.33 16 20 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 21 C 0.01 0.40 5.46 84.65 0.46 0.86 16 22 N -0.93 -54.72 13.29 21.45 0.28 -54.43 16 23 Si 0.98 41.51 29.54 68.60 2.03 43.53 16 24 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 25 H -0.29 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.97 6.78 -2.38 -0.02 0.95 16 30 H 0.08 1.28 6.38 -2.39 -0.02 1.27 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.15 3.46 4.95 -2.91 -0.01 3.44 16 35 H 0.42 3.20 6.85 -92.71 -0.63 2.56 16 36 H 0.41 3.90 8.93 -92.71 -0.83 3.07 16 37 H 0.16 2.34 6.39 -2.91 -0.02 2.33 16 38 H 0.15 5.24 5.46 -2.91 -0.02 5.23 16 39 H 0.42 10.80 8.25 -92.71 -0.77 10.04 16 40 H 0.41 13.98 8.34 -92.72 -0.77 13.20 16 41 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -74.90 361.79 -0.80 -75.71 By element: Atomic # 1 Polarization: 34.73 SS G_CDS: -1.89 Total: 32.84 kcal Atomic # 6 Polarization: 17.88 SS G_CDS: 5.66 Total: 23.54 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -5.63 Total: -121.19 kcal Atomic # 8 Polarization: -53.46 SS G_CDS: -0.98 Total: -54.43 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -74.90 -0.80 -75.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421154909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.077 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds