Wall clock time and date at job start Tue Mar 31 2020 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 N 1.46503 * 109.47207 * 239.99772 * 2 1 3 5 5 C 1.34778 * 119.99757 * 85.00199 * 4 2 1 6 6 O 1.21283 * 119.99845 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00044 * 179.97438 * 5 4 2 8 8 H 1.09008 * 109.47001 * 319.99753 * 7 5 4 9 9 N 1.46903 * 109.47089 * 200.00396 * 7 5 4 10 10 C 1.52994 * 109.47213 * 79.99763 * 7 5 4 11 11 C 1.52995 * 109.47320 * 184.99782 * 10 7 5 12 12 C 1.50700 * 109.47387 * 180.02562 * 11 10 7 13 13 H 1.08004 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00218 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00043 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99977 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47000 * 90.00146 * 16 14 12 18 18 H 1.48503 * 109.47209 * 209.99825 * 16 14 12 19 19 H 1.48495 * 109.47425 * 330.00070 * 16 14 12 20 20 C 1.50699 * 109.47121 * 120.00347 * 2 1 3 21 21 C 1.38255 * 120.00423 * 80.01927 * 20 2 1 22 22 C 1.38216 * 120.00139 * 179.97438 * 21 20 2 23 23 C 1.38256 * 120.00092 * 0.02562 * 22 21 20 24 24 C 1.38208 * 119.99920 * 359.73680 * 23 22 21 25 25 N 1.48021 * 120.00303 * 180.27426 * 24 23 22 26 26 O 1.21803 * 119.99862 * 180.23927 * 25 24 23 27 27 O 1.21794 * 119.99606 * 0.24173 * 25 24 23 28 28 C 1.38220 * 119.99884 * 260.00317 * 20 2 1 29 29 H 1.09005 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08987 * 109.47151 * 300.00000 * 1 2 3 31 31 H 1.09007 * 109.46849 * 60.00104 * 1 2 3 32 32 H 0.97000 * 120.00382 * 264.99793 * 4 2 1 33 33 H 1.00903 * 110.99522 * 176.04959 * 9 7 5 34 34 H 1.00902 * 110.99803 * 299.99683 * 9 7 5 35 35 H 1.09000 * 109.47427 * 305.00472 * 10 7 5 36 36 H 1.09005 * 109.46924 * 65.00015 * 10 7 5 37 37 H 1.09000 * 109.47434 * 300.00686 * 11 10 7 38 38 H 1.09005 * 109.46932 * 60.00238 * 11 10 7 39 39 H 0.96999 * 120.00157 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.99786 * 359.97438 * 21 20 2 41 41 H 1.08001 * 119.99666 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.00076 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.99600 * 359.97438 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8591 1.1586 -2.4114 7 6 2.6500 -0.7285 -3.5875 8 1 3.4565 -1.4077 -3.3108 9 7 3.1511 0.2591 -4.5526 10 6 1.5069 -1.5250 -4.2196 11 6 2.0447 -2.3440 -5.3947 12 6 0.9186 -3.1280 -6.0178 13 1 -0.0809 -3.0496 -5.6161 14 6 1.1642 -3.9454 -7.1006 15 7 2.3814 -4.0413 -7.5894 16 14 -0.2318 -4.9167 -7.8734 17 1 -0.8654 -4.1060 -8.9442 18 1 0.3026 -6.1741 -8.4551 19 1 -1.2426 -5.2420 -6.8352 20 6 2.0323 -0.7105 1.2304 21 6 2.0671 -2.0921 1.2651 22 6 2.5283 -2.7437 2.3935 23 6 2.9544 -2.0138 3.4876 24 6 2.9242 -0.6325 3.4511 25 7 3.3861 0.1491 4.6202 26 8 3.3554 1.3664 4.5896 27 8 3.7968 -0.4250 5.6127 28 6 2.4586 0.0192 2.3242 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 2.2491 -1.6318 -1.1526 33 1 3.5528 -0.1951 -5.3591 34 1 2.4217 0.9009 -4.8249 35 1 1.0765 -2.1957 -3.4760 36 1 0.7394 -0.8381 -4.5766 37 1 2.4750 -1.6733 -6.1383 38 1 2.8121 -3.0309 -5.0377 39 1 2.5541 -4.6161 -8.3514 40 1 1.7339 -2.6624 0.4106 41 1 2.5559 -3.8230 2.4204 42 1 3.3152 -2.5229 4.3691 43 1 2.4320 1.0986 2.2968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424104953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:17 Heat of formation + Delta-G solvation = -30.288619 kcal Electronic energy + Delta-G solvation = -26172.053264 eV Core-core repulsion = 22219.823736 eV Total energy + Delta-G solvation = -3952.229528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.51211 -40.61244 -39.45719 -36.89006 -36.23864 -35.36930 -32.94436 -32.38267 -32.25813 -29.98897 -29.87224 -27.00865 -26.65568 -24.75052 -23.70669 -23.20883 -21.62119 -20.76671 -19.99027 -19.27683 -18.93287 -17.84404 -17.62932 -17.04373 -16.57494 -16.26740 -15.63258 -15.17763 -14.95376 -14.67557 -14.52305 -14.25143 -14.04843 -13.87243 -13.31968 -13.19698 -12.93627 -12.78838 -12.54976 -12.22528 -12.15869 -11.88990 -11.79956 -11.50746 -11.44779 -11.43179 -11.18590 -11.00317 -10.75790 -10.12585 -10.09355 -10.03124 -9.79132 -9.39826 -9.30399 -9.26012 -8.51858 -8.29253 -6.16218 -4.19807 -0.56630 0.37369 0.94934 1.02772 2.68957 2.77416 3.04142 3.21148 3.28367 3.30426 3.73380 3.93597 4.21040 4.29963 4.32277 4.40980 4.52944 4.81531 4.90489 4.99035 5.03806 5.09022 5.20046 5.20193 5.33896 5.42505 5.45462 5.46831 5.63780 5.66675 5.75490 5.92296 6.06715 6.16265 6.29062 6.40515 6.76615 7.26943 7.29979 7.42090 7.49201 7.54857 7.79978 7.81353 8.22035 8.27587 8.86149 9.45565 10.94599 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.002355 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.783177 B =11884.351697 C =12535.334621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 H 0.103 0.897 4 N -0.733 5.733 5 C 0.529 3.471 6 O -0.532 6.532 7 C 0.075 3.925 8 H 0.096 0.904 9 N -0.831 5.831 10 C -0.137 4.137 11 C 0.024 3.976 12 C -0.525 4.525 13 H 0.054 0.946 14 C 0.059 3.941 15 N -0.892 5.892 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.085 4.085 21 C -0.061 4.061 22 C -0.110 4.110 23 C -0.057 4.057 24 C -0.041 4.041 25 N 0.028 4.972 26 O -0.158 6.158 27 O -0.161 6.161 28 C -0.044 4.044 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.400 0.600 33 H 0.355 0.645 34 H 0.346 0.654 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.262 0.738 40 H 0.146 0.854 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 2.864 20.656 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.079 3.921 3 H 0.121 0.879 4 N -0.387 5.387 5 C 0.316 3.684 6 O -0.407 6.407 7 C -0.040 4.040 8 H 0.114 0.886 9 N -0.363 5.363 10 C -0.177 4.177 11 C -0.013 4.013 12 C -0.563 4.563 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.086 4.086 21 C -0.080 4.080 22 C -0.128 4.128 23 C -0.076 4.076 24 C -0.124 4.124 25 N 0.548 4.452 26 O -0.374 6.374 27 O -0.376 6.376 28 C -0.064 4.064 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.236 0.764 33 H 0.171 0.829 34 H 0.159 0.841 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.163 0.837 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.002 3.506 20.475 20.773 hybrid contribution -1.206 -1.385 -0.762 1.988 sum -1.204 2.122 19.712 19.863 Atomic orbital electron populations 1.22208 0.93455 1.02925 1.03307 1.19724 0.94661 0.96942 0.80727 0.87895 1.46152 1.69224 1.14139 1.09224 1.20951 0.76212 0.87072 0.84121 1.90650 1.49213 1.16020 1.84804 1.21483 0.98541 0.93256 0.90750 0.88566 1.58745 1.38275 1.19853 1.19428 1.22384 0.96385 0.98699 1.00183 1.19103 0.96588 0.94263 0.91343 1.21159 0.94908 1.25988 1.14273 0.92734 1.25015 0.95601 0.96815 0.96870 1.69942 1.19606 1.38954 1.24606 0.86584 0.82253 0.79555 0.79558 1.20575 1.21122 1.19908 1.20017 0.99272 0.93872 0.95442 1.21543 0.94031 0.93897 0.98507 1.21253 0.98442 1.01286 0.91842 1.21126 0.95389 0.90735 1.00359 1.21083 1.10768 0.92141 0.88434 1.43622 0.98215 1.01387 1.01971 1.94565 1.58964 0.95499 1.88400 1.94539 1.47852 1.72740 1.22498 1.20890 0.93249 1.02285 0.89973 0.91896 0.91465 0.90760 0.76438 0.82911 0.84061 0.92591 0.92593 0.96375 0.96344 0.92815 0.83651 0.83059 0.82817 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 9.46 37.16 0.35 -1.05 16 2 C 0.18 1.69 2.78 -69.08 -0.19 1.50 16 3 H 0.10 1.08 7.44 -51.93 -0.39 0.70 16 4 N -0.73 -7.74 5.03 -54.93 -0.28 -8.01 16 5 C 0.53 7.71 7.04 -10.98 -0.08 7.63 16 6 O -0.53 -9.35 15.91 5.55 0.09 -9.26 16 7 C 0.07 1.16 3.21 -68.87 -0.22 0.94 16 8 H 0.10 1.39 8.14 -51.92 -0.42 0.97 16 9 N -0.83 -13.42 8.94 -5.65 -0.05 -13.47 16 10 C -0.14 -2.46 4.78 -26.74 -0.13 -2.59 16 11 C 0.02 0.55 4.74 -27.89 -0.13 0.42 16 12 C -0.53 -13.81 9.11 -34.44 -0.31 -14.12 16 13 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 16 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 C -0.08 -0.63 4.95 -104.62 -0.52 -1.15 16 21 C -0.06 -0.36 9.06 -39.58 -0.36 -0.72 16 22 C -0.11 -0.56 10.05 -39.58 -0.40 -0.96 16 23 C -0.06 -0.38 9.56 -39.59 -0.38 -0.76 16 24 C -0.04 -0.37 6.85 -79.95 -0.55 -0.92 16 25 N 0.03 0.32 4.45 33.96 0.15 0.47 16 26 O -0.16 -1.95 18.45 -29.46 -0.54 -2.49 16 27 O -0.16 -1.89 18.45 -29.46 -0.54 -2.44 16 28 C -0.04 -0.36 9.18 -39.58 -0.36 -0.73 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.49 8.14 -51.94 -0.42 0.07 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.40 3.37 6.87 -40.82 -0.28 3.09 16 33 H 0.36 5.80 7.55 -39.29 -0.30 5.50 16 34 H 0.35 5.67 8.58 -39.29 -0.34 5.34 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.15 0.64 6.92 -52.48 -0.36 0.27 16 41 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 42 H 0.15 0.82 7.61 -52.49 -0.40 0.42 16 43 H 0.16 1.19 7.59 -52.49 -0.40 0.80 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -31.98 372.12 -8.97 -40.95 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.74 Total: 8.60 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -3.37 Total: -11.01 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.56 Total: -45.54 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -1.00 Total: -14.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.98 -8.97 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424104953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds