Wall clock time and date at job start Tue Mar 31 2020 12:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47302 * 2 1 4 4 N 1.46503 * 109.47207 * 239.99772 * 2 1 3 5 5 C 1.34778 * 119.99757 * 85.00199 * 4 2 1 6 6 O 1.21283 * 119.99845 * 0.02562 * 5 4 2 7 7 C 1.50700 * 120.00044 * 179.97438 * 5 4 2 8 8 H 1.09008 * 109.47001 * 319.99753 * 7 5 4 9 9 N 1.46903 * 109.47089 * 200.00396 * 7 5 4 10 10 C 1.52994 * 109.47213 * 79.99763 * 7 5 4 11 11 C 1.52995 * 109.47320 * 184.99782 * 10 7 5 12 12 C 1.50700 * 109.47387 * 180.02562 * 11 10 7 13 13 H 1.08004 * 119.99936 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00218 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00043 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99977 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47000 * 90.00146 * 16 14 12 18 18 H 1.48503 * 109.47209 * 209.99825 * 16 14 12 19 19 H 1.48495 * 109.47425 * 330.00070 * 16 14 12 20 20 C 1.50699 * 109.47121 * 120.00347 * 2 1 3 21 21 C 1.38255 * 120.00423 * 80.01927 * 20 2 1 22 22 C 1.38216 * 120.00139 * 179.97438 * 21 20 2 23 23 C 1.38256 * 120.00092 * 0.02562 * 22 21 20 24 24 C 1.38208 * 119.99920 * 359.73680 * 23 22 21 25 25 N 1.48021 * 120.00303 * 180.27426 * 24 23 22 26 26 O 1.21803 * 119.99862 * 180.23927 * 25 24 23 27 27 O 1.21794 * 119.99606 * 0.24173 * 25 24 23 28 28 C 1.38220 * 119.99884 * 260.00317 * 20 2 1 29 29 H 1.09005 * 109.47299 * 179.97438 * 1 2 3 30 30 H 1.08987 * 109.47151 * 300.00000 * 1 2 3 31 31 H 1.09007 * 109.46849 * 60.00104 * 1 2 3 32 32 H 0.97000 * 120.00382 * 264.99793 * 4 2 1 33 33 H 1.00903 * 110.99522 * 176.04959 * 9 7 5 34 34 H 1.00902 * 110.99803 * 299.99683 * 9 7 5 35 35 H 1.09000 * 109.47427 * 305.00472 * 10 7 5 36 36 H 1.09005 * 109.46924 * 65.00015 * 10 7 5 37 37 H 1.09000 * 109.47434 * 300.00686 * 11 10 7 38 38 H 1.09005 * 109.46932 * 60.00238 * 11 10 7 39 39 H 0.96999 * 120.00157 * 180.02562 * 15 14 12 40 40 H 1.08005 * 119.99786 * 359.97438 * 21 20 2 41 41 H 1.08001 * 119.99666 * 180.02562 * 22 21 20 42 42 H 1.07999 * 120.00076 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.99600 * 359.97438 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1962 5 6 2.1471 -0.0183 -2.3571 6 8 1.8591 1.1586 -2.4114 7 6 2.6500 -0.7285 -3.5875 8 1 3.4565 -1.4077 -3.3108 9 7 3.1511 0.2591 -4.5526 10 6 1.5069 -1.5250 -4.2196 11 6 2.0447 -2.3440 -5.3947 12 6 0.9186 -3.1280 -6.0178 13 1 -0.0809 -3.0496 -5.6161 14 6 1.1642 -3.9454 -7.1006 15 7 2.3814 -4.0413 -7.5894 16 14 -0.2318 -4.9167 -7.8734 17 1 -0.8654 -4.1060 -8.9442 18 1 0.3026 -6.1741 -8.4551 19 1 -1.2426 -5.2420 -6.8352 20 6 2.0323 -0.7105 1.2304 21 6 2.0671 -2.0921 1.2651 22 6 2.5283 -2.7437 2.3935 23 6 2.9544 -2.0138 3.4876 24 6 2.9242 -0.6325 3.4511 25 7 3.3861 0.1491 4.6202 26 8 3.3554 1.3664 4.5896 27 8 3.7968 -0.4250 5.6127 28 6 2.4586 0.0192 2.3242 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 2.2491 -1.6318 -1.1526 33 1 3.5528 -0.1951 -5.3591 34 1 2.4217 0.9009 -4.8249 35 1 1.0765 -2.1957 -3.4760 36 1 0.7394 -0.8381 -4.5766 37 1 2.4750 -1.6733 -6.1383 38 1 2.8121 -3.0309 -5.0377 39 1 2.5541 -4.6161 -8.3514 40 1 1.7339 -2.6624 0.4106 41 1 2.5559 -3.8230 2.4204 42 1 3.3152 -2.5229 4.3691 43 1 2.4320 1.0986 2.2968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424104953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:17 Heat of formation + Delta-G solvation = -50.997990 kcal Electronic energy + Delta-G solvation = -26172.951290 eV Core-core repulsion = 22219.823736 eV Total energy + Delta-G solvation = -3953.127554 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.30597 -41.45215 -40.37299 -37.74040 -37.34554 -36.60996 -34.82860 -33.09571 -32.94882 -31.67170 -30.59513 -28.18000 -27.70438 -26.01146 -24.82689 -23.81816 -22.68342 -22.01895 -21.16430 -20.03498 -19.76802 -18.92372 -18.65167 -18.16374 -17.62135 -17.31400 -16.57905 -16.40453 -16.11375 -15.90543 -15.56933 -15.30985 -14.93548 -14.76476 -14.63744 -14.41691 -14.05254 -13.64724 -13.49965 -13.38925 -13.19830 -12.94378 -12.84968 -12.75013 -12.66882 -12.50158 -12.35605 -12.31338 -12.11532 -11.78950 -11.70546 -11.28812 -10.81274 -10.63199 -10.55251 -10.40667 -10.15732 -9.63695 -8.20696 -6.30631 -1.29875 -0.15963 0.24285 0.31712 1.40214 1.41529 1.51141 1.58873 1.97711 2.26886 2.40496 3.08963 3.13518 3.42171 3.66350 3.73590 3.75936 3.77990 3.92727 3.94704 4.13161 4.18787 4.26725 4.28605 4.53430 4.64325 4.68439 4.72315 4.79924 4.85888 4.93463 5.01992 5.10879 5.11539 5.20115 5.40115 5.44289 5.48750 5.67667 5.82390 6.07374 6.22250 6.40944 6.45901 6.47811 6.85632 7.19007 7.38700 8.89927 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.002355 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.783177 B =11884.351697 C =12535.334621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.187 3.813 3 H 0.086 0.914 4 N -0.715 5.715 5 C 0.532 3.468 6 O -0.566 6.566 7 C 0.080 3.920 8 H 0.111 0.889 9 N -0.833 5.833 10 C -0.119 4.119 11 C 0.029 3.971 12 C -0.542 4.542 13 H 0.056 0.944 14 C 0.005 3.995 15 N -0.927 5.927 16 Si 0.956 3.044 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.263 1.263 20 C -0.087 4.087 21 C -0.053 4.053 22 C -0.096 4.096 23 C -0.053 4.053 24 C -0.059 4.059 25 N 0.030 4.970 26 O -0.196 6.196 27 O -0.166 6.166 28 C -0.050 4.050 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.050 0.950 32 H 0.414 0.586 33 H 0.353 0.647 34 H 0.344 0.656 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.000 1.000 38 H 0.004 0.996 39 H 0.263 0.737 40 H 0.168 0.832 41 H 0.187 0.813 42 H 0.168 0.832 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.131 0.657 21.474 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.083 3.917 3 H 0.104 0.896 4 N -0.369 5.369 5 C 0.318 3.682 6 O -0.443 6.443 7 C -0.035 4.035 8 H 0.129 0.871 9 N -0.364 5.364 10 C -0.159 4.159 11 C -0.008 4.008 12 C -0.580 4.580 13 H 0.075 0.925 14 C -0.194 4.194 15 N -0.567 5.567 16 Si 0.782 3.218 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.088 4.088 21 C -0.071 4.071 22 C -0.114 4.114 23 C -0.072 4.072 24 C -0.142 4.142 25 N 0.545 4.455 26 O -0.405 6.405 27 O -0.384 6.384 28 C -0.070 4.070 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.252 0.748 33 H 0.168 0.832 34 H 0.157 0.843 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.018 0.982 38 H 0.022 0.978 39 H 0.072 0.928 40 H 0.186 0.814 41 H 0.205 0.795 42 H 0.186 0.814 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.954 1.328 21.329 21.392 hybrid contribution -0.899 -0.779 -1.011 1.561 sum -1.853 0.549 20.318 20.410 Atomic orbital electron populations 1.22166 0.92859 1.03673 1.02797 1.19693 0.95053 0.96272 0.80722 0.89606 1.45981 1.67797 1.14645 1.08508 1.20695 0.76059 0.86594 0.84807 1.90645 1.50822 1.17446 1.85433 1.21442 0.97967 0.93124 0.91012 0.87137 1.58766 1.38208 1.19963 1.19483 1.22123 0.96737 0.98269 0.98799 1.18977 0.95406 0.93893 0.92563 1.21623 0.95825 1.26064 1.14445 0.92544 1.25849 0.97887 0.98028 0.97587 1.70056 1.21525 1.39925 1.25221 0.85575 0.79455 0.78036 0.78754 1.20391 1.20874 1.18747 1.19781 1.00211 0.94582 0.94274 1.21860 0.92691 0.93067 0.99500 1.21636 0.96543 1.02815 0.90428 1.21462 0.94544 0.89685 1.01498 1.21235 1.12489 0.92849 0.87668 1.43978 0.97697 1.01352 1.02491 1.94557 1.60557 0.96445 1.88934 1.94505 1.47891 1.72557 1.23427 1.20885 0.93553 1.02335 0.90233 0.90452 0.90155 0.93132 0.74837 0.83246 0.84323 0.90938 0.93767 0.98220 0.97786 0.92809 0.81450 0.79536 0.81419 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.46 71.98 0.68 -1.81 16 2 C 0.19 3.16 2.78 44.24 0.12 3.28 16 3 H 0.09 1.80 7.44 -2.39 -0.02 1.78 16 4 N -0.71 -13.60 5.03 -446.10 -2.24 -15.84 16 5 C 0.53 14.87 7.04 87.66 0.62 15.49 16 6 O -0.57 -19.76 15.91 -3.04 -0.05 -19.81 16 7 C 0.08 2.38 3.21 44.17 0.14 2.52 16 8 H 0.11 2.99 8.14 -2.38 -0.02 2.97 16 9 N -0.83 -26.79 8.94 -171.80 -1.54 -28.33 16 10 C -0.12 -4.16 4.78 30.59 0.15 -4.02 16 11 C 0.03 1.32 4.74 29.85 0.14 1.46 16 12 C -0.54 -28.17 9.11 25.60 0.23 -27.94 16 13 H 0.06 2.85 7.74 -2.91 -0.02 2.82 16 14 C 0.00 0.26 5.46 84.65 0.46 0.73 16 15 N -0.93 -52.67 13.29 21.45 0.28 -52.39 16 16 Si 0.96 41.67 29.54 68.60 2.03 43.70 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 20 C -0.09 -1.11 4.95 -19.86 -0.10 -1.21 16 21 C -0.05 -0.42 9.06 22.27 0.20 -0.21 16 22 C -0.10 -0.56 10.05 22.27 0.22 -0.34 16 23 C -0.05 -0.56 9.56 22.27 0.21 -0.34 16 24 C -0.06 -0.99 6.85 36.37 0.25 -0.74 16 25 N 0.03 0.68 4.45 -46.46 -0.21 0.48 16 26 O -0.20 -5.05 18.45 18.88 0.35 -4.70 16 27 O -0.17 -3.89 18.45 18.89 0.35 -3.54 16 28 C -0.05 -0.78 9.18 22.27 0.20 -0.58 16 29 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.41 5.59 6.87 -92.71 -0.64 4.95 16 33 H 0.35 11.61 7.55 -89.69 -0.68 10.93 16 34 H 0.34 11.36 8.58 -89.69 -0.77 10.59 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.00 -0.02 6.87 -2.39 -0.02 -0.04 16 38 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 39 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 40 H 0.17 0.61 6.92 -2.91 -0.02 0.59 16 41 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 42 H 0.17 1.29 7.61 -2.91 -0.02 1.27 16 43 H 0.15 2.40 7.59 -2.91 -0.02 2.38 16 Total: -1.00 -69.93 372.12 1.50 -68.43 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: -1.01 Total: 25.70 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 3.54 Total: -13.71 kcal Atomic # 7 Polarization: -92.37 SS G_CDS: -3.70 Total: -96.07 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: 0.65 Total: -28.05 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -69.93 1.50 -68.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424104953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.431 kcal (2) G-P(sol) polarization free energy of solvation -69.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds