Wall clock time and date at job start Tue Mar 31 2020 13:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47380 * 2 1 4 4 O 1.42894 * 109.47290 * 120.00523 * 2 1 3 5 5 C 1.35957 * 116.99877 * 275.00839 * 4 2 1 6 6 C 1.38657 * 120.06294 * 5.48472 * 5 4 2 7 7 C 1.38180 * 119.96876 * 179.72426 * 6 5 4 8 8 C 1.38266 * 120.09790 * 0.55462 * 7 6 5 9 9 C 1.38265 * 120.11941 * 359.72538 * 8 7 6 10 10 C 1.38323 * 120.03002 * 359.97438 * 9 8 7 11 11 F 1.35103 * 120.04573 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.46938 * 240.00281 * 2 1 3 13 13 O 1.21280 * 120.00074 * 254.85487 * 12 2 1 14 14 N 1.34783 * 120.00072 * 74.85401 * 12 2 1 15 15 C 1.46501 * 119.99766 * 355.39099 * 14 12 2 16 16 C 1.50696 * 109.46812 * 264.03402 * 15 14 12 17 17 H 1.07996 * 120.00679 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99548 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00177 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99786 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46959 * 90.00287 * 20 18 16 22 22 H 1.48500 * 109.47060 * 210.00058 * 20 18 16 23 23 H 1.48497 * 109.47546 * 330.00217 * 20 18 16 24 24 C 1.46497 * 119.99756 * 175.38797 * 14 12 2 25 25 C 1.52995 * 109.47698 * 274.75369 * 24 14 12 26 26 C 1.52994 * 117.50064 * 115.82371 * 25 24 14 27 27 C 1.52998 * 117.50101 * 184.48637 * 25 24 14 28 28 H 1.09001 * 109.47245 * 63.40740 * 1 2 3 29 29 H 1.09003 * 109.47343 * 183.40330 * 1 2 3 30 30 H 1.09002 * 109.47010 * 303.40610 * 1 2 3 31 31 H 1.08002 * 120.01531 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.95542 * 180.27333 * 7 6 5 33 33 H 1.07998 * 119.94191 * 179.74148 * 8 7 6 34 34 H 1.08002 * 119.97641 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.46958 * 24.03487 * 15 14 12 36 36 H 1.09001 * 109.46400 * 144.03460 * 15 14 12 37 37 H 0.97000 * 119.99713 * 180.02562 * 19 18 16 38 38 H 1.09005 * 109.46982 * 154.75426 * 24 14 12 39 39 H 1.09003 * 109.47218 * 34.76051 * 24 14 12 40 40 H 1.09006 * 115.54824 * 330.15728 * 25 24 14 41 41 H 1.09005 * 117.50201 * 215.00972 * 26 25 24 42 42 H 1.09005 * 117.49972 * 0.02883 * 26 25 24 43 43 H 1.08992 * 117.50125 * 359.97365 * 27 25 24 44 44 H 1.08997 * 117.49805 * 145.00238 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1124 0.0627 2.3046 6 6 1.6594 1.3730 2.3287 7 6 1.7629 2.1178 3.4880 8 6 2.3281 1.5623 4.6210 9 6 2.7864 0.2579 4.5995 10 6 2.6797 -0.4943 3.4436 11 9 3.1269 -1.7690 3.4225 12 6 2.0323 -0.7104 -1.2305 13 8 2.4931 -1.8285 -1.1396 14 7 1.9694 -0.1031 -2.4321 15 6 1.3216 1.2048 -2.5588 16 6 -0.1059 1.0173 -3.0039 17 1 -0.4921 0.0234 -3.1750 18 6 -0.9192 2.1147 -3.1919 19 7 -0.4490 3.3251 -2.9831 20 14 -2.6884 1.8824 -3.7444 21 1 -3.5652 1.7476 -2.5535 22 1 -3.1161 3.0589 -4.5432 23 1 -2.7905 0.6561 -4.5756 24 6 2.5488 -0.7509 -3.6114 25 6 4.0406 -0.4215 -3.6930 26 6 5.0288 -1.5814 -3.5553 27 6 4.8084 -0.9210 -4.9185 28 1 -0.3634 0.4600 -0.9190 29 1 -0.3634 -1.0259 0.0610 30 1 -0.3633 0.5658 0.8579 31 1 1.2221 1.8099 1.4431 32 1 1.4060 3.1369 3.5079 33 1 2.4116 2.1481 5.5244 34 1 3.2279 -0.1736 5.4857 35 1 1.3378 1.7132 -1.5947 36 1 1.8560 1.8051 -3.2951 37 1 -1.0213 4.0971 -3.1150 38 1 2.0471 -0.3881 -4.5086 39 1 2.4187 -1.8303 -3.5338 40 1 4.3331 0.5413 -3.2738 41 1 5.9713 -1.3818 -3.0455 42 1 4.6160 -2.5793 -3.4070 43 1 4.2509 -1.4846 -5.6664 44 1 5.6060 -0.2869 -5.3056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505213240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:02 Heat of formation + Delta-G solvation = -64.191462 kcal Electronic energy + Delta-G solvation = -27651.460224 eV Core-core repulsion = 23677.840596 eV Total energy + Delta-G solvation = -3973.619627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.61206 -40.32277 -39.05921 -37.41267 -36.65379 -34.93943 -32.63429 -31.67919 -30.61897 -29.46952 -27.82571 -26.56684 -24.06334 -23.19839 -22.65948 -22.17132 -22.04104 -20.39143 -18.69000 -18.43506 -16.98954 -16.73435 -16.51653 -16.12000 -15.80690 -15.69290 -15.07067 -14.92786 -14.54152 -14.48618 -14.24997 -14.21676 -13.55380 -13.34290 -12.81585 -12.78372 -12.53351 -12.28221 -12.02970 -11.91739 -11.79849 -11.52037 -11.33139 -11.31400 -11.25288 -10.99249 -10.93498 -10.71829 -10.65504 -10.32006 -10.15894 -9.82514 -9.60695 -9.09361 -8.89481 -8.67637 -8.09023 -7.85832 -6.33361 -4.40658 1.13699 1.29223 2.93071 3.14125 3.20649 3.22944 3.29020 3.60708 3.91120 4.15987 4.21957 4.35006 4.74466 4.85790 4.97712 5.04314 5.06759 5.14969 5.20730 5.24425 5.32206 5.34128 5.44534 5.53795 5.74524 5.84463 6.00283 6.03772 6.07635 6.13065 6.14767 6.19472 6.21884 6.26638 6.36412 6.40439 6.51575 6.65731 6.69344 6.90066 7.02980 7.34921 7.51145 7.61604 7.88205 8.18324 8.63819 8.86827 9.26494 10.72526 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009180 B = 0.004913 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3049.412273 B = 5697.845358 C = 7911.884984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.074 3.926 3 H 0.097 0.903 4 O -0.284 6.284 5 C 0.109 3.891 6 C -0.185 4.185 7 C -0.087 4.087 8 C -0.138 4.138 9 C -0.120 4.120 10 C 0.063 3.937 11 F -0.133 7.133 12 C 0.523 3.477 13 O -0.545 6.545 14 N -0.589 5.589 15 C 0.231 3.769 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.069 3.931 19 N -0.885 5.885 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.154 3.846 25 C -0.162 4.162 26 C -0.174 4.174 27 C -0.179 4.179 28 H 0.131 0.869 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.146 0.854 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.093 0.907 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.540 -0.798 8.074 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.015 3.985 3 H 0.114 0.886 4 O -0.196 6.196 5 C 0.061 3.939 6 C -0.204 4.204 7 C -0.106 4.106 8 C -0.157 4.157 9 C -0.139 4.139 10 C 0.043 3.957 11 F -0.112 7.112 12 C 0.309 3.691 13 O -0.423 6.423 14 N -0.321 5.321 15 C 0.112 3.888 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.196 1.196 24 C 0.031 3.969 25 C -0.181 4.181 26 C -0.211 4.211 27 C -0.217 4.217 28 H 0.149 0.851 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.163 0.837 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.782 -1.434 8.048 10.013 hybrid contribution -1.014 0.170 -0.364 1.091 sum 4.768 -1.264 7.684 9.131 Atomic orbital electron populations 1.22715 0.91667 1.03649 1.07001 1.22340 0.96875 0.96435 0.82845 0.88581 1.86236 1.80656 1.37002 1.15749 1.19147 0.96489 0.91296 0.86926 1.21425 1.04862 0.93167 1.00904 1.21041 0.97550 0.99962 0.92007 1.20879 1.01119 0.94625 0.99043 1.20962 1.01662 0.94872 0.96361 1.17024 1.04087 0.81022 0.93598 1.91503 1.87176 1.35525 1.96970 1.19800 0.78792 0.86109 0.84358 1.90639 1.46637 1.18911 1.86126 1.48041 1.55647 1.22398 1.05965 1.19581 0.92606 0.78162 0.98485 1.21436 0.95806 0.93501 1.47159 0.91648 1.24948 0.98933 0.94919 0.94754 1.69914 1.36715 0.97963 1.47691 0.86534 0.84207 0.78030 0.79054 1.20295 1.20968 1.19629 1.20846 0.89652 0.97899 0.88531 1.22779 0.94343 0.98834 1.02170 1.22968 1.00692 0.97973 0.99441 1.22913 1.03097 1.04248 0.91426 0.85095 0.91937 0.92036 0.83685 0.85032 0.85122 0.84395 0.94424 0.94308 0.92291 0.89443 0.90906 0.87961 0.89518 0.88684 0.88878 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.07 1.41 1.80 -27.88 -0.05 1.36 16 3 H 0.10 1.73 4.95 -51.93 -0.26 1.47 16 4 O -0.28 -5.60 9.24 -39.06 -0.36 -5.97 16 5 C 0.11 1.82 6.61 -39.18 -0.26 1.57 16 6 C -0.18 -2.65 8.28 -39.45 -0.33 -2.98 16 7 C -0.09 -1.01 10.04 -39.59 -0.40 -1.41 16 8 C -0.14 -1.45 10.04 -39.56 -0.40 -1.85 16 9 C -0.12 -1.43 10.02 -39.54 -0.40 -1.83 16 10 C 0.06 0.98 7.31 -39.30 -0.29 0.69 16 11 F -0.13 -2.30 17.11 2.25 0.04 -2.26 16 12 C 0.52 11.13 6.96 -10.98 -0.08 11.06 16 13 O -0.54 -12.94 16.20 -13.90 -0.23 -13.16 16 14 N -0.59 -11.96 2.47 -175.06 -0.43 -12.40 16 15 C 0.23 5.06 4.65 -5.19 -0.02 5.04 16 16 C -0.54 -12.82 6.86 -34.44 -0.24 -13.06 16 17 H 0.07 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -22.51 13.29 55.43 0.74 -21.77 16 20 Si 0.89 19.25 29.54 -169.99 -5.02 14.23 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 24 C 0.15 2.80 5.69 -4.05 -0.02 2.78 16 25 C -0.16 -2.62 5.98 -90.63 -0.54 -3.16 16 26 C -0.17 -2.57 10.18 -26.70 -0.27 -2.84 16 27 C -0.18 -2.38 10.25 -26.69 -0.27 -2.65 16 28 H 0.13 2.68 4.38 -51.93 -0.23 2.46 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.00 6.87 -51.93 -0.36 0.65 16 31 H 0.15 2.08 5.38 -52.49 -0.28 1.80 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.04 0.83 5.61 -51.93 -0.29 0.54 16 36 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 37 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 38 H 0.09 1.56 8.04 -51.93 -0.42 1.14 16 39 H 0.07 1.36 7.24 -51.93 -0.38 0.98 16 40 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -28.16 367.88 -9.02 -37.18 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.97 Total: 7.54 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -3.33 Total: -8.94 kcal Atomic # 7 Polarization: -34.47 SS G_CDS: 0.30 Total: -34.17 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.59 Total: -19.13 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.16 -9.02 -37.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505213240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.010 kcal (2) G-P(sol) polarization free energy of solvation -28.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds