Wall clock time and date at job start Tue Mar 31 2020 12:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 115.54785 * 2 1 4 4 C 1.52997 * 117.51654 * 214.30305 * 2 1 3 5 5 H 1.09004 * 117.49753 * 145.02769 * 4 2 1 6 6 C 1.50696 * 117.50356 * 0.02562 * 4 2 1 7 7 O 1.21285 * 119.99437 * 291.38073 * 6 4 2 8 8 N 1.34776 * 120.00514 * 111.37541 * 6 4 2 9 9 C 1.39124 * 120.00171 * 174.46691 * 8 6 4 10 10 C 1.38650 * 120.28505 * 340.14193 * 9 8 6 11 11 C 1.38222 * 120.03350 * 179.97438 * 10 9 8 12 12 C 1.38865 * 120.61448 * 0.03693 * 11 10 9 13 13 C 1.36463 * 120.57976 * 0.02562 * 12 11 10 14 14 C 1.40737 * 119.94042 * 359.65557 * 13 12 11 15 15 C 1.41079 * 120.30131 * 180.34241 * 14 13 12 16 16 H 1.08000 * 119.99662 * 151.31391 * 15 14 13 17 17 C 1.39955 * 119.99904 * 331.31777 * 15 14 13 18 18 N 1.30852 * 119.99901 * 348.50650 * 17 15 14 19 19 Si 1.86797 * 120.00025 * 168.50842 * 17 15 14 20 20 H 1.48494 * 109.47263 * 59.99418 * 19 17 15 21 21 H 1.48502 * 109.47233 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47040 * 299.99895 * 19 17 15 23 23 C 1.53003 * 117.49970 * 145.67129 * 2 1 3 24 24 H 1.09003 * 117.49908 * 0.02562 * 23 2 1 25 25 C 1.50692 * 117.50008 * 214.99902 * 23 2 1 26 26 C 1.38245 * 120.00164 * 351.12281 * 25 23 2 27 27 C 1.38231 * 119.99795 * 179.73953 * 26 25 23 28 28 C 1.38234 * 120.00037 * 0.55233 * 27 26 25 29 29 C 1.38231 * 120.00298 * 359.70380 * 28 27 26 30 30 C 1.38230 * 119.99822 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.47380 * 274.32716 * 1 2 3 32 32 H 1.08995 * 109.47906 * 34.32615 * 1 2 3 33 33 H 1.08998 * 109.47253 * 154.32961 * 1 2 3 34 34 H 0.96993 * 119.99480 * 354.46593 * 8 6 4 35 35 H 1.08002 * 119.97906 * 359.97438 * 10 9 8 36 36 H 1.07994 * 119.69049 * 180.02562 * 11 10 9 37 37 H 1.08001 * 119.70821 * 179.97438 * 12 11 10 38 38 H 1.07996 * 120.03126 * 179.97438 * 13 12 11 39 39 H 0.97006 * 119.99508 * 180.02562 * 18 17 15 40 40 H 1.08001 * 119.99374 * 359.97438 * 26 25 23 41 41 H 1.08001 * 119.99936 * 180.27794 * 27 26 25 42 42 H 1.08009 * 119.99700 * 179.72197 * 28 27 26 43 43 H 1.07999 * 119.99867 * 180.02562 * 29 28 27 44 44 H 1.08002 * 120.00232 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2368 -1.1209 -0.7647 5 1 3.1720 -0.8749 -1.2678 6 6 1.3729 -2.1405 -1.4611 7 8 0.7111 -2.9208 -0.8097 8 7 1.3355 -2.1854 -2.8076 9 6 0.6301 -3.1976 -3.4506 10 6 0.3162 -4.3679 -2.7767 11 6 -0.3852 -5.3700 -3.4204 12 6 -0.7815 -5.2186 -4.7427 13 6 -0.4848 -4.0777 -5.4301 14 6 0.2225 -3.0394 -4.7959 15 6 0.5270 -1.8537 -5.4972 16 1 0.6300 -0.9213 -4.9621 17 6 0.6954 -1.8859 -6.8862 18 7 0.7950 -3.0336 -7.5067 19 14 0.7781 -0.2904 -7.8542 20 1 1.9239 0.5220 -7.3725 21 1 0.9594 -0.5951 -9.2962 22 1 -0.4829 0.4704 -7.6632 23 6 2.2364 -1.1208 0.7654 24 1 1.6112 -1.8584 1.2685 25 6 3.5289 -0.7806 1.4614 26 6 4.1282 0.4464 1.2455 27 6 5.3111 0.7604 1.8882 28 6 5.9006 -0.1568 2.7380 29 6 5.3042 -1.3857 2.9498 30 6 4.1185 -1.6976 2.3115 31 1 -0.3634 0.0775 1.0248 32 1 -0.3635 0.8486 -0.5794 33 1 -0.3633 -0.9262 -0.4452 34 1 1.8003 -1.5119 -3.3282 35 1 0.6199 -4.4966 -1.7483 36 1 -0.6272 -6.2791 -2.8902 37 1 -1.3287 -6.0112 -5.2316 38 1 -0.7970 -3.9696 -6.4583 39 1 0.9121 -3.0558 -8.4695 40 1 3.6702 1.1609 0.5776 41 1 5.7769 1.7207 1.7230 42 1 6.8272 0.0870 3.2366 43 1 5.7646 -2.1020 3.6140 44 1 3.6526 -2.6579 2.4766 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558190942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:55 Heat of formation + Delta-G solvation = 31.729831 kcal Electronic energy + Delta-G solvation = -25734.200991 eV Core-core repulsion = 22195.510048 eV Total energy + Delta-G solvation = -3538.690943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40830 -39.23222 -37.65421 -36.27484 -33.75276 -33.65107 -31.25030 -30.96852 -29.62245 -28.86043 -27.98306 -25.40691 -24.29499 -23.12719 -22.20936 -21.31250 -20.29942 -20.07556 -18.98134 -17.42390 -17.33474 -16.59877 -16.09746 -15.30887 -15.27095 -15.00194 -14.89546 -14.37280 -13.99629 -13.82970 -13.51219 -13.11168 -12.96910 -12.82119 -12.71826 -12.45315 -12.30529 -12.12124 -11.73904 -11.58483 -11.37850 -11.30186 -11.18306 -11.07863 -10.99663 -10.55135 -10.52459 -10.14132 -9.94555 -9.71511 -9.37991 -9.27208 -9.05619 -8.78265 -8.55616 -7.37436 -6.95067 -6.65762 -4.40553 1.17035 1.27105 2.52813 2.84066 3.02358 3.04191 3.20253 3.28005 3.55919 3.83760 3.87713 4.06161 4.54614 4.62724 4.71358 4.79335 4.85815 4.89733 4.98594 5.16664 5.27269 5.39065 5.42743 5.51880 5.65801 5.75756 5.84842 5.87589 5.89246 6.01755 6.09475 6.33528 6.36038 6.37136 6.41678 6.53971 6.56675 6.62795 6.86489 6.89973 7.05925 7.15531 7.29375 7.64934 7.71760 7.97443 8.10394 8.11693 8.44840 8.55891 8.81432 8.82989 9.02821 10.16889 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013982 B = 0.003232 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.063834 B = 8660.052123 C = 9724.977846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.116 4.116 3 H 0.113 0.887 4 C -0.170 4.170 5 H 0.121 0.879 6 C 0.527 3.473 7 O -0.537 6.537 8 N -0.629 5.629 9 C 0.021 3.979 10 C -0.106 4.106 11 C -0.220 4.220 12 C -0.119 4.119 13 C -0.145 4.145 14 C 0.098 3.902 15 C -0.471 4.471 16 H 0.074 0.926 17 C 0.077 3.923 18 N -0.798 5.798 19 Si 0.909 3.091 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.086 4.086 24 H 0.127 0.873 25 C -0.046 4.046 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.128 4.128 29 C -0.119 4.119 30 C -0.110 4.110 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.406 0.594 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.122 0.878 39 H 0.281 0.719 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 8.000 13.230 16.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.131 0.869 4 C -0.191 4.191 5 H 0.139 0.861 6 C 0.315 3.685 7 O -0.417 6.417 8 N -0.269 5.269 9 C -0.073 4.073 10 C -0.126 4.126 11 C -0.240 4.240 12 C -0.138 4.138 13 C -0.165 4.165 14 C 0.094 3.906 15 C -0.501 4.501 16 H 0.092 0.908 17 C -0.141 4.141 18 N -0.424 5.424 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.104 4.104 24 H 0.145 0.855 25 C -0.046 4.046 26 C -0.138 4.138 27 C -0.137 4.137 28 C -0.146 4.146 29 C -0.137 4.137 30 C -0.128 4.128 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.241 0.759 35 H 0.143 0.857 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.656 7.366 13.437 16.706 hybrid contribution 0.479 0.962 -0.984 1.457 sum 7.135 8.328 12.453 16.593 Atomic orbital electron populations 1.21491 0.91915 1.03516 1.02187 1.22503 0.96046 0.93528 1.01367 0.86902 1.22541 1.01760 1.00701 0.94130 0.86072 1.19402 0.82306 0.84435 0.82383 1.90568 1.43856 1.41726 1.65552 1.42883 1.49895 1.28729 1.05393 1.17855 1.05229 0.89373 0.94813 1.21025 0.99672 0.92043 0.99892 1.20362 1.08818 0.99281 0.95556 1.20493 1.01180 0.97652 0.94477 1.20916 1.01187 0.94102 1.00294 1.17352 0.90015 0.93915 0.89294 1.19249 1.44069 0.94953 0.91855 0.90783 1.25834 0.92480 0.97534 0.98205 1.69796 1.35429 1.26304 1.10864 0.86354 0.79808 0.82021 0.78440 1.19080 1.20337 1.18920 1.21172 0.95821 1.02103 0.91311 0.85536 1.19196 0.94702 0.94041 0.96669 1.21098 0.95897 0.96597 1.00256 1.21113 0.95806 0.99476 0.97269 1.21137 1.00038 0.94278 0.99173 1.21137 0.95766 0.96922 0.99837 1.21044 0.95737 0.99254 0.96782 0.91909 0.91947 0.90843 0.75872 0.85672 0.89242 0.89437 0.86034 0.90830 0.85840 0.86140 0.86291 0.86078 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 10.03 37.16 0.37 -1.38 16 2 C -0.12 -1.41 5.73 -90.62 -0.52 -1.93 16 3 H 0.11 1.12 6.18 -51.93 -0.32 0.80 16 4 C -0.17 -2.43 5.82 -91.77 -0.53 -2.96 16 5 H 0.12 1.56 8.14 -51.93 -0.42 1.13 16 6 C 0.53 9.90 6.09 -10.99 -0.07 9.84 16 7 O -0.54 -11.52 12.21 5.55 0.07 -11.45 16 8 N -0.63 -12.90 5.17 -9.48 -0.05 -12.95 16 9 C 0.02 0.52 6.53 -83.17 -0.54 -0.03 16 10 C -0.11 -2.59 8.77 -39.44 -0.35 -2.93 16 11 C -0.22 -5.20 10.04 -39.36 -0.39 -5.60 16 12 C -0.12 -2.85 9.97 -39.99 -0.40 -3.25 16 13 C -0.14 -3.74 8.60 -39.28 -0.34 -4.08 16 14 C 0.10 2.53 5.56 -106.65 -0.59 1.94 16 15 C -0.47 -11.71 8.33 -37.86 -0.32 -12.02 16 16 H 0.07 1.72 7.14 -52.49 -0.37 1.35 16 17 C 0.08 1.84 5.24 -17.33 -0.09 1.75 16 18 N -0.80 -19.98 10.87 55.55 0.60 -19.38 16 19 Si 0.91 17.90 29.58 -169.99 -5.03 12.87 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 23 C -0.09 -1.11 5.28 -91.77 -0.48 -1.60 16 24 H 0.13 1.81 7.67 -51.93 -0.40 1.41 16 25 C -0.05 -0.54 5.61 -104.62 -0.59 -1.13 16 26 C -0.12 -1.26 9.29 -39.58 -0.37 -1.63 16 27 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 28 C -0.13 -1.18 10.05 -39.59 -0.40 -1.58 16 29 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 30 C -0.11 -1.24 9.74 -39.58 -0.39 -1.62 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.20 5.71 -51.93 -0.30 0.91 16 34 H 0.41 7.61 7.42 -40.82 -0.30 7.31 16 35 H 0.13 3.02 5.43 -52.49 -0.29 2.74 16 36 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.09 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.21 6.23 -52.49 -0.33 2.88 16 39 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 40 H 0.12 1.12 6.03 -52.49 -0.32 0.80 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -28.75 362.81 -11.28 -40.03 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -5.56 Total: 16.69 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: -6.79 Total: -31.29 kcal Atomic # 7 Polarization: -32.88 SS G_CDS: 0.56 Total: -32.33 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.75 -11.28 -40.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558190942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.764 kcal (2) G-P(sol) polarization free energy of solvation -28.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds