Wall clock time and date at job start Tue Mar 31 2020 12:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 110.67691 * 2 1 4 4 C 1.55001 * 110.62137 * 237.04097 * 2 1 3 5 5 C 1.54810 * 102.09266 * 204.47498 * 4 2 1 6 6 H 1.08998 * 110.59924 * 262.14718 * 5 4 2 7 7 C 1.53001 * 110.48805 * 139.55577 * 5 4 2 8 8 C 1.54096 * 104.18626 * 20.87593 * 5 4 2 9 9 H 1.09002 * 109.88345 * 242.60385 * 8 5 4 10 10 C 1.50703 * 109.87816 * 121.45694 * 8 5 4 11 11 O 1.21293 * 119.99834 * 257.84900 * 10 8 5 12 12 N 1.34782 * 120.00227 * 77.84066 * 10 8 5 13 13 C 1.46502 * 119.99675 * 4.89780 * 12 10 8 14 14 C 1.50699 * 109.47090 * 95.31993 * 13 12 10 15 15 H 1.07999 * 120.00133 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99933 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00053 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00247 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47112 * 90.00254 * 18 16 14 20 20 H 1.48493 * 109.47406 * 210.00407 * 18 16 14 21 21 H 1.48500 * 109.46574 * 330.00587 * 18 16 14 22 22 C 1.40029 * 119.99782 * 184.89739 * 12 10 8 23 23 C 1.38848 * 120.04875 * 353.00735 * 22 12 10 24 24 C 1.38109 * 119.95336 * 179.77030 * 23 22 12 25 25 C 1.38473 * 120.04416 * 0.50796 * 24 23 22 26 26 F 1.35106 * 119.95457 * 179.72278 * 25 24 23 27 27 C 1.38474 * 120.09169 * 359.74465 * 25 24 23 28 28 C 1.38106 * 120.04439 * 0.02562 * 27 25 24 29 29 O 1.43743 * 107.29613 * 2.03268 * 8 5 4 30 30 H 1.09004 * 109.46887 * 298.48568 * 1 2 3 31 31 H 1.09004 * 109.47081 * 58.48791 * 1 2 3 32 32 H 1.08996 * 109.46699 * 178.48634 * 1 2 3 33 33 H 1.08999 * 110.90777 * 86.27460 * 4 2 1 34 34 H 1.08996 * 110.93089 * 322.68774 * 4 2 1 35 35 H 1.09000 * 109.46614 * 308.69045 * 7 5 4 36 36 H 1.09001 * 109.46689 * 68.68562 * 7 5 4 37 37 H 1.08997 * 109.46866 * 188.69048 * 7 5 4 38 38 H 1.09000 * 109.47069 * 215.32356 * 13 12 10 39 39 H 1.09000 * 109.47038 * 335.31975 * 13 12 10 40 40 H 0.96996 * 120.00076 * 179.97438 * 17 16 14 41 41 H 1.07995 * 120.01615 * 0.02562 * 23 22 12 42 42 H 1.07997 * 119.97877 * 180.27630 * 24 23 22 43 43 H 1.07999 * 119.97679 * 180.02562 * 27 25 24 44 44 H 1.07998 * 120.02411 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0199 0.0000 4 6 2.0759 -0.7892 -1.2172 5 6 3.4796 -1.2166 -0.7236 6 1 4.2423 -0.5347 -1.0995 7 6 3.7856 -2.6517 -1.1568 8 6 3.3840 -1.1253 0.8117 9 1 4.0854 -0.3782 1.1831 10 6 3.6889 -2.4678 1.4248 11 8 2.7854 -3.1706 1.8260 12 7 4.9656 -2.8876 1.5272 13 6 6.0628 -1.9964 1.1421 14 6 6.5843 -1.2848 2.3639 15 1 6.1430 -1.4774 3.3305 16 6 7.6256 -0.3886 2.2477 17 7 8.1634 -0.1544 1.0705 18 14 8.2726 0.4930 3.7621 19 1 9.3604 -0.3104 4.3757 20 1 8.8008 1.8249 3.3718 21 1 7.1710 0.6654 4.7429 22 6 5.2432 -4.1754 2.0017 23 6 4.2189 -4.9676 2.5027 24 6 4.4941 -6.2393 2.9658 25 6 5.7923 -6.7205 2.9404 26 9 6.0604 -7.9627 3.3991 27 6 6.8162 -5.9301 2.4460 28 6 6.5444 -4.6596 1.9776 29 8 2.0384 -0.7353 1.1336 30 1 -0.3633 0.4902 0.9033 31 1 -0.3633 0.5372 -0.8761 32 1 -0.3632 -1.0273 -0.0271 33 1 2.1510 -0.1474 -2.0950 34 1 1.4552 -1.6604 -1.4265 35 1 2.9614 -3.3027 -0.8653 36 1 3.9102 -2.6857 -2.2391 37 1 4.7031 -2.9889 -0.6746 38 1 6.8650 -2.5812 0.6921 39 1 5.6996 -1.2632 0.4219 40 1 8.8957 0.4764 0.9887 41 1 3.2070 -4.5910 2.5264 42 1 3.6969 -6.8575 3.3515 43 1 7.8279 -6.3074 2.4266 44 1 7.3433 -4.0433 1.5924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558627774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:15 Heat of formation + Delta-G solvation = -96.550985 kcal Electronic energy + Delta-G solvation = -28320.776724 eV Core-core repulsion = 24345.753882 eV Total energy + Delta-G solvation = -3975.022842 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.79005 -42.33278 -40.46428 -38.85972 -37.04843 -34.76176 -34.48907 -33.14340 -32.07513 -30.76592 -29.22515 -27.89702 -27.55687 -25.38406 -23.97301 -23.50697 -22.22094 -21.97010 -20.34686 -18.83403 -18.74126 -18.58871 -18.03410 -17.67844 -16.69316 -16.61208 -16.55390 -16.28883 -16.24877 -15.51907 -15.39417 -15.16586 -14.55402 -14.39245 -14.28753 -14.05035 -13.98878 -13.69352 -13.50892 -13.38199 -13.33540 -13.28046 -12.99664 -12.92839 -12.63621 -12.37110 -12.24994 -12.19747 -11.96824 -11.85236 -11.79658 -11.62344 -10.85257 -10.84445 -10.66659 -10.14336 -10.04379 -8.79353 -8.25547 -6.41285 0.11796 0.31236 1.38175 1.40518 1.45417 1.52727 1.81930 2.36498 2.74460 2.89477 3.04075 3.30180 3.38169 3.43164 3.73317 3.82357 3.92294 3.97357 4.22432 4.23863 4.31330 4.36220 4.37826 4.46262 4.50538 4.58286 4.70677 4.76007 4.85678 4.88980 4.98210 4.99676 5.03827 5.06394 5.16285 5.22352 5.24252 5.27604 5.30130 5.33699 5.61547 5.65896 5.88019 5.92923 6.13667 6.32933 6.68327 7.06234 7.30316 8.77992 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008334 B = 0.006102 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3359.092839 B = 4587.497591 C = 7034.219758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 H 0.083 0.917 4 C -0.132 4.132 5 C -0.109 4.109 6 H 0.104 0.896 7 C -0.154 4.154 8 C 0.067 3.933 9 H 0.090 0.910 10 C 0.524 3.476 11 O -0.544 6.544 12 N -0.534 5.534 13 C 0.241 3.759 14 C -0.554 4.554 15 H 0.044 0.956 16 C 0.036 3.964 17 N -0.907 5.907 18 Si 0.948 3.052 19 H -0.274 1.274 20 H -0.275 1.275 21 H -0.278 1.278 22 C 0.143 3.857 23 C -0.165 4.165 24 C -0.129 4.129 25 C 0.052 3.948 26 F -0.146 7.146 27 C -0.124 4.124 28 C -0.127 4.127 29 O -0.377 6.377 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.039 0.961 39 H 0.054 0.946 40 H 0.271 0.729 41 H 0.176 0.824 42 H 0.153 0.847 43 H 0.157 0.843 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.218 -2.396 -6.170 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.000 4.000 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.128 4.128 6 H 0.122 0.878 7 C -0.211 4.211 8 C 0.006 3.994 9 H 0.108 0.892 10 C 0.316 3.684 11 O -0.424 6.424 12 N -0.254 5.254 13 C 0.122 3.878 14 C -0.592 4.592 15 H 0.062 0.938 16 C -0.166 4.166 17 N -0.546 5.546 18 Si 0.774 3.226 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.203 1.203 22 C 0.047 3.953 23 C -0.185 4.185 24 C -0.148 4.148 25 C 0.032 3.968 26 F -0.125 7.125 27 C -0.144 4.144 28 C -0.147 4.147 29 O -0.297 6.297 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.192 0.808 42 H 0.171 0.829 43 H 0.175 0.825 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.665 -2.626 -5.896 10.805 hybrid contribution 1.049 0.378 1.036 1.522 sum -7.616 -2.249 -4.859 9.310 Atomic orbital electron populations 1.21766 0.91356 1.02876 1.03575 1.23539 0.96665 0.95569 0.84261 0.89945 1.23283 0.93495 1.01228 0.98937 1.22481 1.00374 0.99419 0.90570 0.87790 1.22039 1.01275 0.94571 1.03222 1.22698 0.86591 0.93032 0.97038 0.89249 1.20809 0.81512 0.88476 0.77630 1.90227 1.46669 1.56152 1.49380 1.45924 1.07697 1.12690 1.59087 1.19489 0.84060 0.88312 0.95956 1.21496 1.18268 1.25222 0.94241 0.93775 1.25438 0.95986 0.96703 0.98500 1.69951 1.25219 1.35544 1.23853 0.85701 0.78556 0.78394 0.79978 1.19986 1.19980 1.20316 1.18355 0.94713 0.85150 0.97083 1.22600 1.02511 0.93897 0.99459 1.21262 0.95603 0.96430 1.01485 1.17739 0.94511 0.81232 1.03324 1.91445 1.94728 1.39222 1.87106 1.21070 0.99919 0.93430 0.99943 1.20901 0.95283 0.96035 1.02490 1.88923 1.26301 1.73777 1.40676 0.92204 0.88067 0.92593 0.86753 0.90062 0.93424 0.89302 0.93151 0.94332 0.92862 0.91938 0.80751 0.82913 0.82509 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.66 71.98 0.70 -2.06 16 2 C 0.06 1.41 3.98 31.28 0.12 1.54 16 3 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 4 C -0.13 -2.92 6.14 31.90 0.20 -2.72 16 5 C -0.11 -3.15 2.73 -9.80 -0.03 -3.17 16 6 H 0.10 2.84 7.91 -2.39 -0.02 2.82 16 7 C -0.15 -4.49 7.95 71.98 0.57 -3.92 16 8 C 0.07 2.48 2.92 30.22 0.09 2.57 16 9 H 0.09 3.62 7.12 -2.39 -0.02 3.60 16 10 C 0.52 21.86 4.93 87.66 0.43 22.30 16 11 O -0.54 -24.23 13.00 15.15 0.20 -24.03 16 12 N -0.53 -22.50 1.68 -635.22 -1.07 -23.57 16 13 C 0.24 10.82 3.26 85.63 0.28 11.10 16 14 C -0.55 -28.04 9.36 25.60 0.24 -27.80 16 15 H 0.04 2.37 7.81 -2.91 -0.02 2.35 16 16 C 0.04 1.80 5.46 84.65 0.46 2.26 16 17 N -0.91 -46.56 13.29 21.45 0.28 -46.27 16 18 Si 0.95 40.90 29.54 68.60 2.03 42.93 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 22 C 0.14 5.79 6.47 38.13 0.25 6.04 16 23 C -0.17 -6.32 9.05 22.39 0.20 -6.11 16 24 C -0.13 -4.21 10.02 22.30 0.22 -3.99 16 25 C 0.05 1.68 7.30 22.38 0.16 1.84 16 26 F -0.15 -4.47 17.27 44.97 0.78 -3.70 16 27 C -0.12 -4.01 10.02 22.29 0.22 -3.79 16 28 C -0.13 -4.73 9.25 22.39 0.21 -4.53 16 29 O -0.38 -13.66 10.49 -130.76 -1.37 -15.03 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 33 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.79 7.70 -2.39 -0.02 1.77 16 35 H 0.05 1.49 7.67 -2.39 -0.02 1.47 16 36 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.05 1.70 5.19 -2.39 -0.01 1.68 16 38 H 0.04 1.79 6.25 -2.39 -0.01 1.78 16 39 H 0.05 2.37 5.19 -2.39 -0.01 2.35 16 40 H 0.27 13.21 8.31 -92.71 -0.77 12.44 16 41 H 0.18 7.19 4.53 -61.78 -0.28 6.91 16 42 H 0.15 4.15 8.06 -2.91 -0.02 4.13 16 43 H 0.16 4.16 8.06 -2.91 -0.02 4.13 16 44 H 0.14 5.33 6.13 -2.91 -0.02 5.31 16 Total: -1.00 -59.08 353.85 5.93 -53.16 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.75 Total: 26.96 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 4.33 Total: -10.45 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.78 Total: -69.84 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.17 Total: -39.06 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -59.08 5.93 -53.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558627774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.393 kcal (2) G-P(sol) polarization free energy of solvation -59.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds