Wall clock time and date at job start Tue Mar 31 2020 12:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.70787 * 2 1 4 4 C 1.52876 * 109.62381 * 239.68984 * 2 1 3 5 5 H 1.09001 * 109.40588 * 308.02267 * 4 2 1 6 6 C 1.50698 * 109.57857 * 68.09785 * 4 2 1 7 7 C 1.38265 * 119.99056 * 264.88084 * 6 4 2 8 8 C 1.38227 * 120.05226 * 180.02562 * 7 6 4 9 9 C 1.38224 * 120.02604 * 0.02562 * 8 7 6 10 10 C 1.38437 * 119.97314 * 359.97438 * 9 8 7 11 11 F 1.35100 * 120.02417 * 180.02562 * 10 9 8 12 12 C 1.38182 * 119.98445 * 84.61559 * 6 4 2 13 13 O 1.42954 * 109.29995 * 188.11407 * 4 2 1 14 14 C 1.42955 * 114.16854 * 62.45003 * 13 4 2 15 15 C 1.53287 * 109.22368 * 297.41835 * 14 13 4 16 16 N 1.47157 * 109.67995 * 120.52732 * 2 1 3 17 17 C 1.34777 * 120.98511 * 350.28615 * 16 2 1 18 18 O 1.21275 * 119.99672 * 354.17892 * 17 16 2 19 19 C 1.50696 * 120.00094 * 174.18277 * 17 16 2 20 20 C 1.52998 * 109.46991 * 179.97438 * 19 17 16 21 21 C 1.50707 * 109.47011 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99587 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99800 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00270 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99741 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46852 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47092 * 299.99404 * 25 23 21 28 28 H 1.48493 * 109.47502 * 59.99825 * 25 23 21 29 29 H 1.08998 * 109.47064 * 307.76546 * 1 2 3 30 30 H 1.08992 * 109.47327 * 67.77465 * 1 2 3 31 31 H 1.09011 * 109.46809 * 187.77209 * 1 2 3 32 32 H 1.07995 * 119.97232 * 359.97438 * 7 6 4 33 33 H 1.08004 * 119.98565 * 179.97438 * 8 7 6 34 34 H 1.07995 * 120.01185 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.01129 * 359.97438 * 12 6 4 36 36 H 1.09000 * 109.51530 * 177.49393 * 14 13 4 37 37 H 1.08999 * 109.51495 * 57.34460 * 14 13 4 38 38 H 1.09002 * 109.68445 * 292.57580 * 15 14 13 39 39 H 1.09001 * 109.68582 * 172.02416 * 15 14 13 40 40 H 1.09000 * 109.47241 * 59.99757 * 19 17 16 41 41 H 1.08997 * 109.46929 * 299.99926 * 19 17 16 42 42 H 1.09000 * 109.47156 * 59.99914 * 20 19 17 43 43 H 1.08997 * 109.47395 * 299.99850 * 20 19 17 44 44 H 0.96994 * 119.99955 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0434 -0.7267 -1.2431 5 1 1.5686 -1.7054 -1.3125 6 6 1.7142 0.0807 -2.4722 7 6 0.5671 -0.1949 -3.1934 8 6 0.2642 0.5446 -4.3212 9 6 1.1080 1.5603 -4.7296 10 6 2.2567 1.8372 -4.0083 11 9 3.0820 2.8301 -4.4063 12 6 2.5559 1.1000 -2.8748 13 8 3.4602 -0.8893 -1.1440 14 6 3.8813 -1.6921 -0.0385 15 6 3.4630 -1.0098 1.2689 16 7 2.0256 -0.7038 1.1935 17 6 1.1869 -1.0626 2.1857 18 8 0.0256 -0.7145 2.1535 19 6 1.6922 -1.8960 3.3350 20 6 0.5475 -2.1603 4.3153 21 6 1.0527 -2.9943 5.4643 22 1 2.0868 -3.3045 5.4927 23 6 0.1947 -3.3614 6.4792 24 7 -1.0647 -2.9841 6.4443 25 14 0.8210 -4.3946 7.9039 26 1 -0.2903 -4.6522 8.8546 27 1 1.3396 -5.6869 7.3877 28 1 1.9113 -3.6669 8.6015 29 1 -0.3633 0.6294 0.8124 30 1 -0.3633 0.3887 -0.9512 31 1 -0.3633 -1.0183 0.1390 32 1 -0.0921 -0.9891 -2.8757 33 1 -0.6319 0.3281 -4.8840 34 1 0.8713 2.1377 -5.6111 35 1 3.4493 1.3181 -2.3087 36 1 4.9654 -1.8026 -0.0609 37 1 3.4131 -2.6743 -0.1026 38 1 4.0285 -0.0871 1.3988 39 1 3.6524 -1.6783 2.1088 40 1 2.4925 -1.3618 3.8470 41 1 2.0728 -2.8445 2.9562 42 1 -0.2531 -2.6943 3.8035 43 1 0.1673 -1.2116 4.6941 44 1 -1.3899 -2.4473 5.7048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592695704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:14 Heat of formation + Delta-G solvation = -95.924057 kcal Electronic energy + Delta-G solvation = -27207.633684 eV Core-core repulsion = 23232.638028 eV Total energy + Delta-G solvation = -3974.995656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.14659 -40.88268 -39.32933 -38.11994 -34.81715 -34.29346 -33.60791 -31.38366 -30.86310 -30.18644 -28.66590 -26.48493 -25.32646 -23.45096 -23.17861 -22.64874 -21.86097 -20.83014 -18.79253 -17.82367 -17.24836 -16.95413 -16.48941 -16.43839 -16.04141 -15.87581 -15.81409 -15.50835 -14.96178 -14.91623 -14.20990 -13.92480 -13.83274 -13.67904 -13.49711 -13.13046 -12.69458 -12.51727 -12.36336 -12.32035 -12.03800 -11.90051 -11.76237 -11.51705 -11.31234 -11.25792 -11.02403 -10.85598 -10.39052 -10.16831 -10.16123 -9.93045 -9.37538 -9.02959 -8.79708 -8.54689 -8.44304 -8.31752 -6.35411 -4.06018 0.76620 0.88631 2.90808 3.00871 3.19102 3.39849 3.42679 3.44851 3.63799 3.90685 4.33630 4.45583 4.53093 4.54118 4.64830 4.70789 4.84419 4.87340 4.97423 4.99309 5.07261 5.15883 5.31381 5.40875 5.42221 5.45339 5.53261 5.62845 5.70010 5.76199 5.78879 5.93722 5.98551 6.00792 6.10481 6.13448 6.36439 6.54594 6.64230 6.68375 6.82734 7.46220 7.51659 7.54617 8.14852 8.45205 8.55562 8.88128 9.67704 11.05530 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028801 B = 0.002582 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.966096 B =10842.124002 C =11380.621089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.123 3.877 3 H 0.075 0.925 4 C 0.121 3.879 5 H 0.077 0.923 6 C -0.048 4.048 7 C -0.115 4.115 8 C -0.091 4.091 9 C -0.152 4.152 10 C 0.094 3.906 11 F -0.140 7.140 12 C -0.126 4.126 13 O -0.374 6.374 14 C 0.048 3.952 15 C 0.072 3.928 16 N -0.626 5.626 17 C 0.515 3.485 18 O -0.524 6.524 19 C -0.123 4.123 20 C 0.026 3.974 21 C -0.609 4.609 22 H 0.049 0.951 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 1.069 2.931 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.288 1.288 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.141 0.859 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.014 0.986 43 H 0.014 0.986 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 6.498 -22.513 25.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.020 3.980 3 H 0.093 0.907 4 C 0.063 3.937 5 H 0.095 0.905 6 C -0.048 4.048 7 C -0.133 4.133 8 C -0.109 4.109 9 C -0.171 4.171 10 C 0.075 3.925 11 F -0.119 7.119 12 C -0.145 4.145 13 O -0.293 6.293 14 C -0.029 4.029 15 C -0.051 4.051 16 N -0.363 5.363 17 C 0.306 3.694 18 O -0.399 6.399 19 C -0.163 4.163 20 C -0.012 4.012 21 C -0.648 4.648 22 H 0.067 0.933 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.898 3.102 26 H -0.207 1.207 27 H -0.215 1.215 28 H -0.214 1.214 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.127 0.873 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.032 0.968 43 H 0.033 0.967 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.980 6.082 -21.217 23.470 hybrid contribution 0.747 0.816 -1.386 1.773 sum 8.727 6.898 -22.603 25.192 Atomic orbital electron populations 1.22184 0.91640 1.04373 1.01537 1.21694 0.96903 0.95597 0.83830 0.90737 1.21248 0.82696 0.97934 0.91844 0.90541 1.19291 0.94774 0.95434 0.95347 1.21079 0.96695 1.00562 0.94969 1.20969 0.99189 0.94532 0.96197 1.21189 0.94385 1.00222 1.01324 1.17695 0.90296 0.88709 0.95774 1.91504 1.71074 1.58972 1.90343 1.20986 1.01341 0.95868 0.96257 1.87933 1.20919 1.72026 1.48382 1.23037 1.00945 0.93688 0.85251 1.22435 0.81543 1.01647 0.99487 1.48423 1.08151 1.59985 1.19750 1.21551 0.85654 0.79399 0.82836 1.90686 1.17968 1.54279 1.76962 1.21779 1.02482 0.97998 0.93992 1.19013 0.92336 0.96951 0.92885 1.22016 0.98034 1.36571 1.08142 0.93307 1.25846 0.94426 0.97855 1.00756 1.70740 1.15059 1.34814 1.33956 0.83546 0.75346 0.75751 0.75606 1.20739 1.21464 1.21448 0.89574 0.93356 0.91495 0.84952 0.84653 0.84726 0.84158 0.87272 0.92231 0.90656 0.87875 0.90139 0.90155 0.96761 0.96730 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 7.52 37.16 0.28 -1.70 16 2 C 0.12 1.61 3.10 -67.64 -0.21 1.40 16 3 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 4 C 0.12 1.36 2.43 -27.95 -0.07 1.30 16 5 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 6 C -0.05 -0.49 4.53 -104.63 -0.47 -0.97 16 7 C -0.11 -1.01 8.25 -39.58 -0.33 -1.34 16 8 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 9 C -0.15 -1.27 10.03 -39.51 -0.40 -1.67 16 10 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 11 F -0.14 -1.53 17.27 2.25 0.04 -1.49 16 12 C -0.13 -1.32 9.33 -39.51 -0.37 -1.69 16 13 O -0.37 -4.17 9.54 -35.23 -0.34 -4.51 16 14 C 0.05 0.45 6.98 37.31 0.26 0.71 16 15 C 0.07 0.79 6.55 -3.53 -0.02 0.76 16 16 N -0.63 -9.01 3.03 -164.99 -0.50 -9.51 16 17 C 0.51 9.57 7.47 -10.99 -0.08 9.49 16 18 O -0.52 -11.37 11.76 5.56 0.07 -11.30 16 19 C -0.12 -2.43 4.01 -27.89 -0.11 -2.54 16 20 C 0.03 0.67 3.57 -27.88 -0.10 0.57 16 21 C -0.61 -17.23 9.11 -34.44 -0.31 -17.54 16 22 H 0.05 1.31 7.74 -52.49 -0.41 0.91 16 23 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 24 N -0.91 -28.49 13.65 55.43 0.76 -27.73 16 25 Si 1.07 25.14 29.90 -169.99 -5.08 20.05 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.09 1.44 6.58 -51.93 -0.34 1.10 16 30 H 0.05 0.57 6.23 -51.93 -0.32 0.24 16 31 H 0.07 1.06 7.03 -51.92 -0.36 0.69 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.14 1.46 7.64 -52.49 -0.40 1.06 16 36 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 1.07 6.04 -51.93 -0.31 0.76 16 40 H 0.08 1.48 7.80 -51.93 -0.40 1.07 16 41 H 0.08 1.46 7.88 -51.93 -0.41 1.05 16 42 H 0.01 0.40 7.96 -51.93 -0.41 -0.01 16 43 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 44 H 0.27 8.63 7.22 -40.82 -0.29 8.33 16 LS Contribution 357.02 15.07 5.38 5.38 Total: -1.00 -33.73 357.02 -8.65 -42.38 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -6.26 Total: 0.00 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -2.72 Total: -13.27 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.26 Total: -37.24 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.27 Total: -15.81 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.73 -8.65 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592695704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.546 kcal (2) G-P(sol) polarization free energy of solvation -33.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds