Wall clock time and date at job start Tue Mar 31 2020 12:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.70787 * 2 1 4 4 C 1.52876 * 109.62381 * 239.68984 * 2 1 3 5 5 H 1.09001 * 109.40588 * 308.02267 * 4 2 1 6 6 C 1.50698 * 109.57857 * 68.09785 * 4 2 1 7 7 C 1.38265 * 119.99056 * 264.88084 * 6 4 2 8 8 C 1.38227 * 120.05226 * 180.02562 * 7 6 4 9 9 C 1.38224 * 120.02604 * 0.02562 * 8 7 6 10 10 C 1.38437 * 119.97314 * 359.97438 * 9 8 7 11 11 F 1.35100 * 120.02417 * 180.02562 * 10 9 8 12 12 C 1.38182 * 119.98445 * 84.61559 * 6 4 2 13 13 O 1.42954 * 109.29995 * 188.11407 * 4 2 1 14 14 C 1.42955 * 114.16854 * 62.45003 * 13 4 2 15 15 C 1.53287 * 109.22368 * 297.41835 * 14 13 4 16 16 N 1.47157 * 109.67995 * 120.52732 * 2 1 3 17 17 C 1.34777 * 120.98511 * 350.28615 * 16 2 1 18 18 O 1.21275 * 119.99672 * 354.17892 * 17 16 2 19 19 C 1.50696 * 120.00094 * 174.18277 * 17 16 2 20 20 C 1.52998 * 109.46991 * 179.97438 * 19 17 16 21 21 C 1.50707 * 109.47011 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99587 * 0.02562 * 21 20 19 23 23 C 1.37873 * 119.99800 * 180.02562 * 21 20 19 24 24 N 1.31517 * 120.00270 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99741 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46852 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47092 * 299.99404 * 25 23 21 28 28 H 1.48493 * 109.47502 * 59.99825 * 25 23 21 29 29 H 1.08998 * 109.47064 * 307.76546 * 1 2 3 30 30 H 1.08992 * 109.47327 * 67.77465 * 1 2 3 31 31 H 1.09011 * 109.46809 * 187.77209 * 1 2 3 32 32 H 1.07995 * 119.97232 * 359.97438 * 7 6 4 33 33 H 1.08004 * 119.98565 * 179.97438 * 8 7 6 34 34 H 1.07995 * 120.01185 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.01129 * 359.97438 * 12 6 4 36 36 H 1.09000 * 109.51530 * 177.49393 * 14 13 4 37 37 H 1.08999 * 109.51495 * 57.34460 * 14 13 4 38 38 H 1.09002 * 109.68445 * 292.57580 * 15 14 13 39 39 H 1.09001 * 109.68582 * 172.02416 * 15 14 13 40 40 H 1.09000 * 109.47241 * 59.99757 * 19 17 16 41 41 H 1.08997 * 109.46929 * 299.99926 * 19 17 16 42 42 H 1.09000 * 109.47156 * 59.99914 * 20 19 17 43 43 H 1.08997 * 109.47395 * 299.99850 * 20 19 17 44 44 H 0.96994 * 119.99955 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0434 -0.7267 -1.2431 5 1 1.5686 -1.7054 -1.3125 6 6 1.7142 0.0807 -2.4722 7 6 0.5671 -0.1949 -3.1934 8 6 0.2642 0.5446 -4.3212 9 6 1.1080 1.5603 -4.7296 10 6 2.2567 1.8372 -4.0083 11 9 3.0820 2.8301 -4.4063 12 6 2.5559 1.1000 -2.8748 13 8 3.4602 -0.8893 -1.1440 14 6 3.8813 -1.6921 -0.0385 15 6 3.4630 -1.0098 1.2689 16 7 2.0256 -0.7038 1.1935 17 6 1.1869 -1.0626 2.1857 18 8 0.0256 -0.7145 2.1535 19 6 1.6922 -1.8960 3.3350 20 6 0.5475 -2.1603 4.3153 21 6 1.0527 -2.9943 5.4643 22 1 2.0868 -3.3045 5.4927 23 6 0.1947 -3.3614 6.4792 24 7 -1.0647 -2.9841 6.4443 25 14 0.8210 -4.3946 7.9039 26 1 -0.2903 -4.6522 8.8546 27 1 1.3396 -5.6869 7.3877 28 1 1.9113 -3.6669 8.6015 29 1 -0.3633 0.6294 0.8124 30 1 -0.3633 0.3887 -0.9512 31 1 -0.3633 -1.0183 0.1390 32 1 -0.0921 -0.9891 -2.8757 33 1 -0.6319 0.3281 -4.8840 34 1 0.8713 2.1377 -5.6111 35 1 3.4493 1.3181 -2.3087 36 1 4.9654 -1.8026 -0.0609 37 1 3.4131 -2.6743 -0.1026 38 1 4.0285 -0.0871 1.3988 39 1 3.6524 -1.6783 2.1088 40 1 2.4925 -1.3618 3.8470 41 1 2.0728 -2.8445 2.9562 42 1 -0.2531 -2.6943 3.8035 43 1 0.1673 -1.2116 4.6941 44 1 -1.3899 -2.4473 5.7048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592695704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:13 Heat of formation + Delta-G solvation = -116.123834 kcal Electronic energy + Delta-G solvation = -27208.509612 eV Core-core repulsion = 23232.638028 eV Total energy + Delta-G solvation = -3975.871584 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.92384 -41.97062 -40.32983 -39.11117 -36.17802 -35.88471 -34.91049 -32.90853 -31.74094 -31.19788 -29.77801 -27.49923 -27.15123 -24.78907 -24.05507 -23.66108 -23.15238 -21.95513 -20.09257 -19.05250 -18.60014 -18.09721 -17.58748 -17.29994 -17.11278 -17.02333 -16.60259 -16.58105 -16.02931 -15.78384 -15.61129 -15.47076 -15.28644 -14.79448 -14.28327 -14.21732 -14.14864 -13.89206 -13.59827 -13.38794 -13.29119 -13.18812 -12.91399 -12.66857 -12.64328 -12.34720 -12.06909 -12.04591 -12.01972 -11.91777 -11.82121 -11.33368 -10.77860 -10.55474 -10.23395 -10.06026 -9.77649 -9.51963 -8.69471 -6.41665 0.05365 0.19364 1.54080 1.54435 1.63923 1.76330 1.82260 2.42919 2.59339 2.63015 3.16707 3.17439 3.47726 3.57327 3.65922 3.77983 3.87414 3.96432 4.05939 4.12662 4.17400 4.20537 4.27940 4.30516 4.34307 4.35867 4.45695 4.65105 4.71881 4.78824 4.79685 4.90417 4.94189 5.04084 5.11117 5.18313 5.28219 5.29031 5.35794 5.41189 5.49130 5.86348 5.92793 5.99664 6.14932 6.27293 6.51385 7.13412 7.44255 8.70490 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028801 B = 0.002582 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.966096 B =10842.124002 C =11380.621089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.122 3.878 3 H 0.077 0.923 4 C 0.132 3.868 5 H 0.076 0.924 6 C -0.061 4.061 7 C -0.119 4.119 8 C -0.085 4.085 9 C -0.148 4.148 10 C 0.076 3.924 11 F -0.149 7.149 12 C -0.135 4.135 13 O -0.379 6.379 14 C 0.049 3.951 15 C 0.064 3.936 16 N -0.617 5.617 17 C 0.513 3.487 18 O -0.567 6.567 19 C -0.111 4.111 20 C 0.030 3.970 21 C -0.618 4.618 22 H 0.067 0.933 23 C -0.045 4.045 24 N -0.940 5.940 25 Si 1.123 2.877 26 H -0.289 1.289 27 H -0.263 1.263 28 H -0.264 1.264 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.144 0.856 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.102 0.898 42 H -0.020 1.020 43 H -0.022 1.022 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.117 5.728 -23.821 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.019 3.981 3 H 0.095 0.905 4 C 0.073 3.927 5 H 0.093 0.907 6 C -0.062 4.062 7 C -0.137 4.137 8 C -0.102 4.102 9 C -0.167 4.167 10 C 0.057 3.943 11 F -0.128 7.128 12 C -0.153 4.153 13 O -0.298 6.298 14 C -0.028 4.028 15 C -0.058 4.058 16 N -0.352 5.352 17 C 0.303 3.697 18 O -0.446 6.446 19 C -0.150 4.150 20 C -0.008 4.008 21 C -0.656 4.656 22 H 0.085 0.915 23 C -0.242 4.242 24 N -0.578 5.578 25 Si 0.943 3.057 26 H -0.215 1.215 27 H -0.188 1.188 28 H -0.189 1.189 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.161 0.839 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.118 0.882 41 H 0.120 0.880 42 H -0.002 1.002 43 H -0.004 1.004 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.229 5.324 -22.578 25.353 hybrid contribution 0.078 1.109 -1.070 1.543 sum 10.307 6.433 -23.648 26.587 Atomic orbital electron populations 1.21975 0.92649 1.02455 1.01514 1.21794 0.96131 0.95965 0.84208 0.90508 1.21079 0.82865 0.97630 0.91082 0.90660 1.19276 0.95652 0.95780 0.95508 1.21324 0.96235 1.00930 0.95203 1.21324 0.99804 0.93467 0.95628 1.21503 0.93443 1.00184 1.01535 1.17909 0.91099 0.88953 0.96300 1.91480 1.71486 1.59366 1.90437 1.20978 1.01433 0.96284 0.96649 1.87950 1.20556 1.72320 1.48955 1.23216 1.02827 0.93090 0.83682 1.22781 0.79122 1.02897 1.00991 1.48370 1.09324 1.58631 1.18912 1.21287 0.85450 0.79437 0.83488 1.90694 1.19847 1.56038 1.78037 1.21544 1.00235 0.99803 0.93462 1.18835 0.93642 0.94404 0.93873 1.22494 0.98864 1.35905 1.08320 0.91458 1.27636 0.93904 0.98563 1.04070 1.70899 1.16758 1.36405 1.33710 0.82893 0.75278 0.75295 0.72271 1.21451 1.18782 1.18893 0.92709 0.90885 0.93535 0.83860 0.81617 0.82577 0.84695 0.84048 0.92135 0.89156 0.86991 0.88169 0.87953 1.00169 1.00373 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 7.52 71.98 0.54 -3.20 16 2 C 0.12 3.15 3.10 44.83 0.14 3.29 16 3 H 0.08 1.98 8.13 -2.39 -0.02 1.96 16 4 C 0.13 2.81 2.43 29.81 0.07 2.88 16 5 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 6 C -0.06 -1.19 4.53 -19.87 -0.09 -1.28 16 7 C -0.12 -1.86 8.25 22.27 0.18 -1.68 16 8 C -0.08 -1.05 10.04 22.26 0.22 -0.83 16 9 C -0.15 -2.12 10.03 22.31 0.22 -1.89 16 10 C 0.08 1.45 7.30 22.38 0.16 1.62 16 11 F -0.15 -3.13 17.27 44.97 0.78 -2.35 16 12 C -0.13 -2.69 9.33 22.32 0.21 -2.48 16 13 O -0.38 -7.68 9.54 -148.98 -1.42 -9.10 16 14 C 0.05 0.78 6.98 72.08 0.50 1.28 16 15 C 0.06 1.24 6.55 86.35 0.57 1.81 16 16 N -0.62 -17.36 3.03 -794.30 -2.40 -19.77 16 17 C 0.51 19.42 7.47 87.66 0.65 20.07 16 18 O -0.57 -26.05 11.76 -3.01 -0.04 -26.09 16 19 C -0.11 -4.36 4.01 29.85 0.12 -4.24 16 20 C 0.03 1.63 3.57 29.85 0.11 1.74 16 21 C -0.62 -35.06 9.11 25.60 0.23 -34.83 16 22 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 23 C -0.05 -2.65 5.46 84.65 0.46 -2.18 16 24 N -0.94 -60.89 13.65 21.45 0.29 -60.60 16 25 Si 1.12 49.73 29.90 68.60 2.05 51.78 16 26 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 28 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 29 H 0.05 1.94 6.58 -2.39 -0.02 1.92 16 30 H 0.07 1.69 6.23 -2.39 -0.01 1.68 16 31 H 0.05 1.53 7.03 -2.38 -0.02 1.51 16 32 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.17 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 35 H 0.14 2.74 7.64 -2.91 -0.02 2.72 16 36 H 0.14 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.11 2.00 6.04 -2.39 -0.01 1.99 16 40 H 0.10 3.53 7.80 -2.39 -0.02 3.52 16 41 H 0.10 3.56 7.88 -2.39 -0.02 3.54 16 42 H -0.02 -1.22 7.96 -2.39 -0.02 -1.23 16 43 H -0.02 -1.35 7.97 -2.39 -0.02 -1.37 16 44 H 0.25 16.93 7.22 -92.71 -0.67 16.26 16 Total: -1.00 -76.98 357.02 4.67 -72.31 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.10 Total: 13.74 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.31 Total: -19.92 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.11 Total: -80.36 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.46 Total: -35.19 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.35 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.05 Total: 51.78 kcal Total: -76.98 4.67 -72.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592695704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.817 kcal (2) G-P(sol) polarization free energy of solvation -76.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds