Wall clock time and date at job start Tue Mar 31 2020 12:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47141 * 2 1 4 4 C 1.53007 * 109.47211 * 240.00112 * 2 1 3 5 5 C 1.50698 * 109.46894 * 64.99777 * 4 2 1 6 6 C 1.38220 * 120.01163 * 100.00402 * 5 4 2 7 7 C 1.38222 * 120.02867 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.04953 * 0.02562 * 7 6 5 9 9 C 1.38174 * 120.02433 * 0.02562 * 8 7 6 10 10 C 1.38435 * 120.01643 * 279.72930 * 5 4 2 11 11 F 1.35099 * 120.02687 * 359.97438 * 10 5 4 12 12 C 1.50702 * 109.47100 * 120.00443 * 2 1 3 13 13 O 1.21282 * 120.00311 * 94.25831 * 12 2 1 14 14 N 1.34775 * 119.99985 * 274.25293 * 12 2 1 15 15 C 1.47016 * 125.64958 * 176.44132 * 14 12 2 16 16 C 1.54324 * 107.40341 * 178.90081 * 15 14 12 17 17 C 1.55400 * 102.82584 * 337.97608 * 16 15 14 18 18 O 1.42900 * 110.89337 * 277.26568 * 17 16 15 19 19 C 1.50704 * 111.06949 * 153.48568 * 17 16 15 20 20 H 1.07994 * 120.00344 * 242.27426 * 19 17 16 21 21 C 1.37879 * 119.99684 * 62.27455 * 19 17 16 22 22 N 1.31516 * 120.00186 * 3.70748 * 21 19 17 23 23 Si 1.86803 * 119.99691 * 183.70723 * 21 19 17 24 24 H 1.48498 * 109.47037 * 94.98515 * 23 21 19 25 25 H 1.48503 * 109.47140 * 214.98325 * 23 21 19 26 26 H 1.48497 * 109.47099 * 334.98271 * 23 21 19 27 27 C 1.47424 * 125.64579 * 356.48195 * 14 12 2 28 28 H 1.09005 * 109.46912 * 172.98531 * 1 2 3 29 29 H 1.08993 * 109.46612 * 292.98520 * 1 2 3 30 30 H 1.08996 * 109.46551 * 52.98762 * 1 2 3 31 31 H 1.08997 * 109.47188 * 185.00280 * 4 2 1 32 32 H 1.09006 * 109.46885 * 305.00379 * 4 2 1 33 33 H 1.08003 * 119.98685 * 359.95183 * 6 5 4 34 34 H 1.08002 * 119.97866 * 180.02562 * 7 6 5 35 35 H 1.07994 * 119.98545 * 179.97438 * 8 7 6 36 36 H 1.08001 * 120.00918 * 179.97438 * 9 8 7 37 37 H 1.09007 * 109.88243 * 298.39307 * 15 14 12 38 38 H 1.08998 * 109.88695 * 59.40426 * 15 14 12 39 39 H 1.09000 * 110.72033 * 96.24433 * 16 15 14 40 40 H 1.08996 * 110.72344 * 219.52297 * 16 15 14 41 41 H 0.96706 * 113.99856 * 292.23654 * 18 17 16 42 42 H 0.97001 * 119.99421 * 180.02562 * 22 21 19 43 43 H 1.08999 * 110.36874 * 322.93268 * 27 14 12 44 44 H 1.09000 * 110.36761 * 85.14703 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 6 2.5585 0.8817 -3.1005 7 6 2.1933 1.5953 -4.2265 8 6 0.9101 1.4856 -4.7298 9 6 -0.0088 0.6627 -4.1072 10 6 0.3580 -0.0579 -2.9829 11 9 -0.5375 -0.8682 -2.3775 12 6 2.0324 -0.7105 1.2304 13 8 2.3080 -1.8905 1.1793 14 7 2.1754 -0.0347 2.3877 15 6 2.5825 -0.6164 3.6750 16 6 2.6372 0.5324 4.7040 17 6 2.8027 1.7909 3.8074 18 8 4.1716 1.9816 3.4445 19 6 2.2515 3.0173 4.4881 20 1 1.4240 3.5534 4.0476 21 6 2.8038 3.4548 5.6733 22 7 3.8573 2.8459 6.1722 23 14 2.0556 4.9126 6.5703 24 1 1.1069 4.4244 7.6031 25 1 3.1336 5.6998 7.2210 26 1 1.3316 5.7724 5.5999 27 6 1.9487 1.4103 2.5724 28 1 -0.3633 -1.0200 -0.1255 29 1 -0.3632 0.4013 0.9460 30 1 -0.3632 0.6186 -0.8206 31 1 3.1263 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2952 33 1 3.5608 0.9688 -2.7078 34 1 2.9107 2.2391 -4.7136 35 1 0.6258 2.0440 -5.6094 36 1 -1.0111 0.5776 -4.5002 37 1 1.8539 -1.3630 3.9914 38 1 3.5663 -1.0759 3.5797 39 1 1.7093 0.5846 5.2735 40 1 3.4929 0.4144 5.3687 41 1 4.7452 2.2214 4.1852 42 1 4.2456 3.1536 7.0062 43 1 2.2842 1.9622 1.6944 44 1 0.8938 1.6074 2.7633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843267.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:29 Heat of formation + Delta-G solvation = -129.364938 kcal Electronic energy + Delta-G solvation = -27544.412422 eV Core-core repulsion = 23567.966660 eV Total energy + Delta-G solvation = -3976.445761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.90783 -41.33173 -40.00454 -39.03238 -36.06867 -35.99855 -34.15978 -32.43289 -31.49014 -31.06164 -30.01531 -27.78370 -26.97477 -25.38637 -23.68597 -23.25027 -21.92585 -21.59471 -19.94779 -19.07957 -18.65732 -18.18626 -17.34811 -17.16880 -16.98069 -16.82722 -16.45585 -16.39539 -15.83067 -15.40725 -15.08747 -14.87087 -14.77419 -14.31407 -14.15762 -14.08554 -13.75867 -13.64014 -13.54846 -13.24511 -13.19437 -13.12455 -12.91543 -12.63154 -12.58741 -12.44150 -12.27594 -12.13320 -11.97506 -11.90011 -11.85866 -11.30199 -10.82724 -10.59011 -10.14352 -9.87367 -9.63144 -9.54884 -8.22733 -6.37956 0.22102 0.30096 1.44672 1.48469 1.55828 1.57361 2.01303 2.41283 2.68803 3.03164 3.33700 3.37354 3.73515 3.76959 3.80236 3.88244 3.98412 4.13671 4.18609 4.23355 4.27293 4.30158 4.38725 4.45866 4.60880 4.65082 4.68189 4.72271 4.77843 4.87676 4.96291 5.06110 5.14643 5.15035 5.18698 5.27731 5.30121 5.44200 5.46699 5.48703 5.53102 5.78277 6.00505 6.05153 6.54329 6.68876 7.09572 7.32587 7.42488 8.83438 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.003212 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.596452 B = 8714.766235 C = 9348.954778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 H 0.101 0.899 4 C -0.055 4.055 5 C -0.125 4.125 6 C -0.097 4.097 7 C -0.126 4.126 8 C -0.092 4.092 9 C -0.157 4.157 10 C 0.081 3.919 11 F -0.146 7.146 12 C 0.526 3.474 13 O -0.589 6.589 14 N -0.608 5.608 15 C 0.112 3.888 16 C -0.127 4.127 17 C 0.233 3.767 18 O -0.593 6.593 19 C -0.557 4.557 20 H 0.067 0.933 21 C 0.034 3.966 22 N -0.911 5.911 23 Si 0.961 3.039 24 H -0.277 1.277 25 H -0.285 1.285 26 H -0.268 1.268 27 C 0.121 3.879 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.155 0.845 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.379 0.621 42 H 0.270 0.730 43 H 0.077 0.923 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.012 -0.500 -18.243 19.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.114 4.114 3 H 0.119 0.881 4 C -0.093 4.093 5 C -0.126 4.126 6 C -0.115 4.115 7 C -0.144 4.144 8 C -0.109 4.109 9 C -0.176 4.176 10 C 0.062 3.938 11 F -0.125 7.125 12 C 0.316 3.684 13 O -0.471 6.471 14 N -0.339 5.339 15 C -0.010 4.010 16 C -0.166 4.166 17 C 0.193 3.807 18 O -0.402 6.402 19 C -0.595 4.595 20 H 0.085 0.915 21 C -0.168 4.168 22 N -0.551 5.551 23 Si 0.787 3.213 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.193 1.193 27 C -0.001 4.001 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.157 0.843 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.169 0.831 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.229 0.771 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.023 -1.342 -18.748 19.738 hybrid contribution 0.034 0.389 1.847 1.888 sum -5.990 -0.953 -16.902 17.957 Atomic orbital electron populations 1.21852 0.91385 1.02843 1.02865 1.21241 0.98730 1.00606 0.90805 0.88128 1.20252 1.01560 0.97940 0.89546 1.19881 0.93459 1.01044 0.98229 1.21244 0.99553 0.94975 0.95744 1.21571 0.97468 0.99449 0.95864 1.21415 0.92526 0.96934 1.00054 1.21433 1.02493 0.98477 0.95179 1.17814 0.87084 0.94126 0.94808 1.91475 1.67083 1.71273 1.82666 1.20813 0.76950 0.86522 0.84066 1.90615 1.53508 1.17571 1.85365 1.48680 1.65893 1.10498 1.08835 1.21913 0.98791 0.96686 0.83652 1.23034 1.01728 0.94913 0.96879 1.19861 0.79937 0.91757 0.89124 1.86078 1.21305 1.92454 1.40402 1.21716 1.18095 1.12233 1.07462 0.91509 1.25665 0.94773 0.98982 0.97347 1.69746 1.22008 1.42017 1.21296 0.85497 0.78059 0.79236 0.78539 1.20276 1.21080 1.19260 1.22423 0.99722 0.78828 0.99152 0.92230 0.92195 0.90310 0.90568 0.91138 0.84269 0.82717 0.82024 0.83131 0.91910 0.93455 0.91701 0.91464 0.77060 0.92053 0.90497 0.89452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 7.55 71.98 0.54 -3.02 16 2 C -0.09 -2.78 2.26 -11.54 -0.03 -2.80 16 3 H 0.10 2.88 6.66 -2.39 -0.02 2.86 16 4 C -0.06 -1.53 4.16 29.85 0.12 -1.40 16 5 C -0.13 -2.88 4.98 -19.82 -0.10 -2.98 16 6 C -0.10 -1.83 9.67 22.26 0.22 -1.61 16 7 C -0.13 -1.77 10.04 22.27 0.22 -1.55 16 8 C -0.09 -1.18 10.04 22.26 0.22 -0.95 16 9 C -0.16 -2.59 10.03 22.31 0.22 -2.37 16 10 C 0.08 1.79 5.90 22.38 0.13 1.92 16 11 F -0.15 -3.65 13.63 44.97 0.61 -3.04 16 12 C 0.53 20.08 6.94 87.66 0.61 20.69 16 13 O -0.59 -25.89 16.54 -3.04 -0.05 -25.94 16 14 N -0.61 -24.08 3.33 -811.81 -2.70 -26.79 16 15 C 0.11 4.61 6.86 86.73 0.60 5.21 16 16 C -0.13 -5.61 5.49 31.87 0.18 -5.44 16 17 C 0.23 10.83 0.89 -10.06 -0.01 10.82 16 18 O -0.59 -29.57 13.19 -148.98 -1.96 -31.54 16 19 C -0.56 -27.44 8.27 25.60 0.21 -27.23 16 20 H 0.07 3.20 7.79 -2.91 -0.02 3.18 16 21 C 0.03 1.65 5.26 84.65 0.45 2.09 16 22 N -0.91 -46.13 10.76 21.45 0.23 -45.90 16 23 Si 0.96 39.54 29.54 68.60 2.03 41.56 16 24 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 C 0.12 4.77 5.82 86.85 0.51 5.28 16 28 H 0.06 1.68 7.33 -2.38 -0.02 1.67 16 29 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.08 1.91 5.88 -2.39 -0.01 1.89 16 31 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 32 H 0.07 2.14 7.82 -2.38 -0.02 2.12 16 33 H 0.14 2.35 8.04 -2.91 -0.02 2.33 16 34 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 2.85 8.04 -2.39 -0.02 2.83 16 40 H 0.07 3.18 7.69 -2.39 -0.02 3.16 16 41 H 0.38 19.46 7.23 -74.05 -0.54 18.92 16 42 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 43 H 0.08 2.89 6.87 -2.39 -0.02 2.88 16 44 H 0.09 3.20 8.03 -2.39 -0.02 3.18 16 Total: -1.00 -59.71 358.73 2.73 -56.98 By element: Atomic # 1 Polarization: 37.52 SS G_CDS: 0.48 Total: 38.00 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 4.09 Total: -3.35 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -2.47 Total: -72.69 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -2.01 Total: -57.47 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.61 Total: -3.04 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.56 kcal Total: -59.71 2.73 -56.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843267.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.381 kcal (2) G-P(sol) polarization free energy of solvation -59.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds