Wall clock time and date at job start Tue Mar 31 2020 13:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47027 * 2 1 4 4 C 1.52996 * 109.47152 * 120.00130 * 2 1 3 5 5 C 1.50695 * 109.47349 * 295.00112 * 4 2 1 6 6 O 1.21280 * 119.99679 * 0.02562 * 5 4 2 7 7 N 1.34775 * 120.00178 * 179.97438 * 5 4 2 8 8 C 1.47022 * 125.65138 * 359.97438 * 7 5 4 9 9 C 1.54322 * 107.27482 * 178.98361 * 8 7 5 10 10 C 1.55157 * 102.93912 * 337.80443 * 9 8 7 11 11 O 1.42900 * 111.00520 * 277.38901 * 10 9 8 12 12 C 1.50702 * 111.00344 * 153.57728 * 10 9 8 13 13 H 1.08002 * 120.00299 * 241.45696 * 12 10 9 14 14 C 1.37884 * 119.99942 * 61.17254 * 12 10 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 10 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 10 17 17 H 1.48504 * 109.47196 * 60.00645 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47679 * 300.00280 * 16 14 12 20 20 C 1.47424 * 125.64952 * 180.02562 * 7 5 4 21 21 C 1.50695 * 109.47220 * 240.00280 * 2 1 3 22 22 C 1.38247 * 119.97509 * 299.72434 * 21 2 1 23 23 C 1.38199 * 120.02367 * 179.76775 * 22 21 2 24 24 C 1.38458 * 119.97802 * 0.50981 * 23 22 21 25 25 F 1.35097 * 120.02680 * 179.76992 * 24 23 22 26 26 C 1.38458 * 119.94643 * 359.74200 * 24 23 22 27 27 C 1.38198 * 119.97350 * 0.02562 * 26 24 23 28 28 H 1.08998 * 109.47611 * 299.99649 * 1 2 3 29 29 H 1.09006 * 109.47464 * 60.00009 * 1 2 3 30 30 H 1.09007 * 109.47190 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47314 * 174.99666 * 4 2 1 32 32 H 1.09003 * 109.47348 * 55.00014 * 4 2 1 33 33 H 1.09003 * 109.88076 * 59.56192 * 8 7 5 34 34 H 1.09001 * 110.00358 * 298.47568 * 8 7 5 35 35 H 1.08995 * 110.71729 * 219.44160 * 9 8 7 36 36 H 1.08996 * 110.71909 * 96.16437 * 9 8 7 37 37 H 0.96704 * 113.99783 * 295.41666 * 11 10 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.09007 * 110.36818 * 85.24741 * 20 7 5 40 40 H 1.09006 * 110.37032 * 322.92419 * 20 7 5 41 41 H 1.08002 * 119.98462 * 0.02562 * 22 21 2 42 42 H 1.08001 * 120.00982 * 180.25340 * 23 22 21 43 43 H 1.08001 * 120.01224 * 180.02562 * 26 24 23 44 44 H 1.08007 * 119.98599 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0569 2.4765 6 8 1.0109 1.0868 2.3633 7 7 1.9844 -0.3921 3.7001 8 6 2.7427 -1.6200 3.9808 9 6 2.9179 -1.7106 5.5113 10 6 2.7394 -0.2390 5.9692 11 8 3.9565 0.4950 5.8204 12 6 2.2420 -0.1719 7.3902 13 1 1.2897 0.2888 7.6078 14 6 2.9999 -0.7040 8.4118 15 7 4.1595 -1.2651 8.1467 16 14 2.3798 -0.6278 10.1721 17 1 1.0854 -1.3489 10.2727 18 1 3.3727 -1.2639 11.0747 19 1 2.1884 0.7905 10.5686 20 6 1.6606 0.2662 4.9789 21 6 2.0323 -0.7103 -1.2304 22 6 1.7027 -2.0355 -1.4459 23 6 2.1589 -2.6866 -2.5764 24 6 2.9550 -2.0142 -3.4881 25 9 3.4053 -2.6510 -4.5912 26 6 3.2887 -0.6885 -3.2686 27 6 2.8274 -0.0381 -2.1399 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1263 -0.7995 1.2055 32 1 1.6053 -1.7198 1.2951 33 1 3.7188 -1.5714 3.4980 34 1 2.1930 -2.4887 3.6184 35 1 3.9134 -2.0753 5.7645 36 1 2.1496 -2.3470 5.9504 37 1 4.6762 0.1819 6.3853 38 1 4.6928 -1.6391 8.8655 39 1 0.6673 -0.0292 5.3168 40 1 1.7199 1.3495 4.8736 41 1 1.0851 -2.5610 -0.7326 42 1 1.8979 -3.7207 -2.7465 43 1 3.9093 -0.1629 -3.9793 44 1 3.0880 0.9959 -1.9683 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843776.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:35 Heat of formation + Delta-G solvation = -132.880935 kcal Electronic energy + Delta-G solvation = -26760.479115 eV Core-core repulsion = 22783.880889 eV Total energy + Delta-G solvation = -3976.598226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.86156 -41.25313 -40.21081 -38.95934 -36.10919 -35.74546 -34.20274 -32.07019 -31.74775 -30.48450 -29.91022 -28.71980 -26.72933 -24.60768 -23.99962 -23.57592 -21.74381 -21.20211 -19.97381 -19.10312 -18.67191 -18.17464 -17.36160 -16.95859 -16.79427 -16.57132 -16.47545 -16.37070 -15.83660 -15.39917 -15.17970 -14.84834 -14.68165 -14.39631 -14.28231 -14.08899 -13.85119 -13.75162 -13.48119 -13.23917 -13.09784 -13.02335 -12.89706 -12.61902 -12.45158 -12.27723 -12.16995 -12.07661 -12.01145 -11.82254 -11.58858 -11.24376 -10.76096 -10.59313 -10.13636 -10.02197 -9.51630 -9.49076 -8.23076 -6.38087 0.17220 0.31918 1.43780 1.45998 1.52518 1.70484 2.11546 2.41102 2.64744 3.01915 3.32928 3.49782 3.71210 3.80128 3.97025 3.98700 4.03231 4.10713 4.13212 4.37885 4.39211 4.41045 4.47602 4.50073 4.63575 4.69883 4.76486 4.82285 4.92563 5.00937 5.02198 5.12645 5.19351 5.20795 5.22586 5.28858 5.35484 5.47704 5.47968 5.57297 5.66321 5.78927 5.96404 6.09544 6.64471 6.71790 7.23622 7.32265 7.40884 8.82130 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027624 B = 0.002448 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.358554 B =11435.794031 C =11853.637061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 H 0.073 0.927 4 C -0.118 4.118 5 C 0.517 3.483 6 O -0.585 6.585 7 N -0.613 5.613 8 C 0.106 3.894 9 C -0.127 4.127 10 C 0.232 3.768 11 O -0.594 6.594 12 C -0.563 4.563 13 H 0.053 0.947 14 C 0.038 3.962 15 N -0.905 5.905 16 Si 0.958 3.042 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.126 3.874 21 C -0.085 4.085 22 C -0.085 4.085 23 C -0.152 4.152 24 C 0.072 3.928 25 F -0.151 7.151 26 C -0.154 4.154 27 C -0.092 4.092 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.377 0.623 38 H 0.271 0.729 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.147 0.853 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -5.615 -19.121 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.047 4.047 3 H 0.092 0.908 4 C -0.158 4.158 5 C 0.308 3.692 6 O -0.467 6.467 7 N -0.345 5.345 8 C -0.016 4.016 9 C -0.166 4.166 10 C 0.192 3.808 11 O -0.402 6.402 12 C -0.601 4.601 13 H 0.072 0.928 14 C -0.164 4.164 15 N -0.544 5.544 16 Si 0.783 3.217 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.205 1.205 20 C 0.003 3.997 21 C -0.086 4.086 22 C -0.102 4.102 23 C -0.170 4.170 24 C 0.053 3.947 25 F -0.130 7.130 26 C -0.173 4.173 27 C -0.110 4.110 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.062 0.938 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.165 0.835 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.729 -4.860 -19.663 20.438 hybrid contribution 0.327 -0.134 1.505 1.546 sum -2.402 -4.994 -18.158 18.985 Atomic orbital electron populations 1.21909 0.93679 1.02464 1.02199 1.19766 0.96698 0.98619 0.89642 0.90822 1.21753 1.03831 1.00421 0.89765 1.21026 0.78645 0.85375 0.84108 1.90618 1.42805 1.26694 1.86579 1.48734 1.54593 1.25690 1.05476 1.22205 0.95983 0.86185 0.97253 1.22942 1.02220 0.99034 0.92366 1.19794 0.81778 0.87726 0.91462 1.86123 1.24167 1.62107 1.67796 1.21648 1.05993 1.39665 0.92808 0.92842 1.25586 0.94919 0.93328 1.02582 1.69773 1.12210 1.38205 1.34212 0.85623 0.78337 0.78143 0.79561 1.19596 1.20466 1.20506 1.22084 0.97995 0.96535 0.83132 1.19930 0.97911 0.94622 0.96089 1.21096 0.98715 0.93708 0.96729 1.21352 0.99199 1.01878 0.94615 1.17999 0.99477 0.92038 0.85226 1.91470 1.87790 1.82179 1.51564 1.21312 1.02845 0.93240 0.99909 1.21157 0.96149 1.00850 0.92849 0.92864 0.92203 0.91402 0.87733 0.86367 0.90950 0.89060 0.90777 0.92016 0.77335 0.91972 0.91136 0.93777 0.83152 0.83141 0.83489 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.75 71.98 0.63 -2.49 16 2 C -0.03 -0.59 2.21 -11.54 -0.03 -0.62 16 3 H 0.07 1.77 7.69 -2.39 -0.02 1.75 16 4 C -0.12 -2.64 4.10 29.85 0.12 -2.52 16 5 C 0.52 17.39 7.57 87.66 0.66 18.05 16 6 O -0.59 -23.63 14.22 -3.03 -0.04 -23.68 16 7 N -0.61 -22.41 3.33 -811.78 -2.70 -25.11 16 8 C 0.11 3.37 6.49 86.73 0.56 3.93 16 9 C -0.13 -5.16 5.38 31.78 0.17 -4.99 16 10 C 0.23 11.01 0.88 -10.15 -0.01 11.00 16 11 O -0.59 -29.97 13.18 -148.98 -1.96 -31.93 16 12 C -0.56 -29.06 8.27 25.60 0.21 -28.84 16 13 H 0.05 2.79 7.79 -2.91 -0.02 2.76 16 14 C 0.04 1.88 5.27 84.66 0.45 2.33 16 15 N -0.91 -45.33 10.73 21.45 0.23 -45.10 16 16 Si 0.96 40.47 29.54 68.60 2.03 42.50 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 C 0.13 5.54 6.08 86.86 0.53 6.07 16 21 C -0.09 -1.49 4.78 -19.86 -0.09 -1.58 16 22 C -0.08 -1.27 8.76 22.26 0.19 -1.08 16 23 C -0.15 -2.35 10.03 22.31 0.22 -2.13 16 24 C 0.07 1.30 7.30 22.37 0.16 1.46 16 25 F -0.15 -3.03 17.27 44.97 0.78 -2.25 16 26 C -0.15 -2.55 10.03 22.31 0.22 -2.33 16 27 C -0.09 -1.54 9.67 22.26 0.22 -1.33 16 28 H 0.05 1.49 5.95 -2.39 -0.01 1.48 16 29 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 30 H 0.07 1.18 7.40 -2.38 -0.02 1.17 16 31 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 32 H 0.12 2.02 7.55 -2.39 -0.02 2.00 16 33 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.07 3.18 7.54 -2.39 -0.02 3.17 16 36 H 0.06 2.54 8.03 -2.39 -0.02 2.52 16 37 H 0.38 19.08 7.51 -74.05 -0.56 18.52 16 38 H 0.27 12.98 8.31 -92.70 -0.77 12.21 16 39 H 0.07 3.05 8.03 -2.38 -0.02 3.03 16 40 H 0.04 2.13 8.04 -2.38 -0.02 2.11 16 41 H 0.15 1.69 7.16 -2.91 -0.02 1.67 16 42 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 44 H 0.14 2.04 7.94 -2.91 -0.02 2.02 16 Total: -1.00 -60.50 362.77 3.01 -57.49 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.46 Total: 33.15 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 4.23 Total: -5.07 kcal Atomic # 7 Polarization: -67.74 SS G_CDS: -2.47 Total: -70.21 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -2.01 Total: -55.61 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -60.50 3.01 -57.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843776.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.389 kcal (2) G-P(sol) polarization free energy of solvation -60.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds