Wall clock time and date at job start Tue Mar 31 2020 12:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 113.28453 * 2 1 4 4 C 1.53751 * 114.08724 * 133.49976 * 2 1 3 5 5 N 1.47070 * 87.88992 * 139.77488 * 4 2 1 6 6 C 1.34778 * 136.05399 * 152.95565 * 5 4 2 7 7 O 1.21606 * 119.99303 * 174.69780 * 6 5 4 8 8 C 1.47428 * 120.00214 * 354.70576 * 6 5 4 9 9 C 1.39222 * 120.28422 * 31.63777 * 8 6 5 10 10 C 1.38226 * 120.09275 * 180.28057 * 9 8 6 11 11 C 1.38826 * 120.67288 * 359.73362 * 10 9 8 12 12 C 1.37594 * 120.57202 * 0.02562 * 11 10 9 13 13 C 1.40710 * 119.88236 * 359.97438 * 12 11 10 14 14 C 1.40885 * 120.32620 * 179.97438 * 13 12 11 15 15 H 1.08004 * 119.99889 * 210.77300 * 14 13 12 16 16 C 1.40275 * 120.00118 * 30.50685 * 14 13 12 17 17 N 1.30625 * 120.00294 * 18.25523 * 16 14 13 18 18 Si 1.86803 * 119.99853 * 198.25921 * 16 14 13 19 19 H 1.48503 * 109.47029 * 59.99771 * 18 16 14 20 20 H 1.48497 * 109.47014 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47007 * 299.99568 * 18 16 14 22 22 C 1.47066 * 87.88433 * 332.70534 * 5 4 2 23 23 H 1.09003 * 113.46486 * 142.11800 * 22 5 4 24 24 C 1.50700 * 113.46914 * 272.50059 * 22 5 4 25 25 C 1.38233 * 119.99536 * 21.05437 * 24 22 5 26 26 C 1.38243 * 119.99479 * 179.78854 * 25 24 22 27 27 C 1.38228 * 120.00070 * 0.46196 * 26 25 24 28 28 C 1.38241 * 119.99935 * 359.76954 * 27 26 25 29 29 C 1.38228 * 119.99879 * 0.02562 * 28 27 26 30 30 H 1.08995 * 109.47543 * 193.06091 * 1 2 3 31 31 H 1.09004 * 109.47357 * 313.06652 * 1 2 3 32 32 H 1.09001 * 109.47407 * 73.06172 * 1 2 3 33 33 H 1.09006 * 113.46679 * 25.04433 * 4 2 1 34 34 H 1.08997 * 113.55267 * 254.52587 * 4 2 1 35 35 H 1.07994 * 119.95730 * 0.03428 * 9 8 6 36 36 H 1.07999 * 119.66173 * 179.71664 * 10 9 8 37 37 H 1.07999 * 119.71245 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.06289 * 180.02562 * 12 11 10 39 39 H 0.96997 * 120.00542 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.00586 * 0.02562 * 25 24 22 41 41 H 1.08007 * 119.99582 * 180.25517 * 26 25 24 42 42 H 1.07997 * 120.00456 * 179.78857 * 27 26 25 43 43 H 1.08004 * 119.99763 * 179.97438 * 28 27 26 44 44 H 1.08002 * 119.99947 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9608 1.0012 0.0000 4 6 2.1575 -0.9662 1.0182 5 7 3.1598 -1.3054 -0.0032 6 6 4.4330 -1.7474 -0.0042 7 8 4.9774 -2.0304 -1.0542 8 6 5.1656 -1.8881 1.2674 9 6 4.4855 -2.2174 2.4367 10 6 5.1754 -2.3425 3.6279 11 6 6.5492 -2.1482 3.6745 12 6 7.2495 -1.8267 2.5346 13 6 6.5710 -1.6934 1.3091 14 6 7.2787 -1.3640 0.1363 15 1 6.7957 -0.7943 -0.6439 16 6 8.6124 -1.7711 -0.0158 17 7 9.0909 -2.7323 0.7282 18 14 9.7045 -0.9385 -1.2822 19 1 9.8046 0.5106 -0.9734 20 1 11.0586 -1.5469 -1.2447 21 1 9.1185 -1.1170 -2.6350 22 6 2.1593 -0.9560 -1.0229 23 1 2.5820 -0.4475 -1.8894 24 6 1.2624 -2.1060 -1.4025 25 6 1.1148 -3.1798 -0.5445 26 6 0.2887 -4.2327 -0.8908 27 6 -0.3824 -4.2162 -2.0991 28 6 -0.2311 -3.1445 -2.9592 29 6 0.5917 -2.0898 -2.6111 30 1 -0.3634 -1.0010 0.2322 31 1 -0.3634 0.7018 0.7508 32 1 -0.3634 0.2994 -0.9831 33 1 1.5076 -1.8005 1.2824 34 1 2.5786 -0.4665 1.8905 35 1 3.4168 -2.3714 2.4139 36 1 4.6402 -2.5937 4.5317 37 1 7.0728 -2.2503 4.6135 38 1 8.3182 -1.6778 2.5801 39 1 10.0132 -3.0136 0.6233 40 1 1.6420 -3.1944 0.3980 41 1 0.1702 -5.0697 -0.2186 42 1 -1.0252 -5.0403 -2.3712 43 1 -0.7551 -3.1318 -3.9035 44 1 0.7103 -1.2527 -3.2832 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601259840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:05 Heat of formation + Delta-G solvation = 37.321195 kcal Electronic energy + Delta-G solvation = -26753.009836 eV Core-core repulsion = 23214.561352 eV Total energy + Delta-G solvation = -3538.448483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18006 -40.06586 -38.97513 -38.12306 -35.65394 -33.04356 -31.90868 -31.82875 -31.69984 -31.19760 -27.94659 -27.06168 -26.88910 -23.81042 -23.45936 -23.06206 -22.55721 -21.08278 -19.96490 -19.19221 -18.02982 -17.52825 -17.32910 -16.94633 -16.51423 -16.07350 -15.87241 -15.55156 -15.50903 -15.11177 -15.05211 -14.52193 -14.34198 -14.13391 -14.00522 -13.54509 -13.50717 -13.40068 -13.11699 -12.95136 -12.86246 -12.64269 -12.56503 -12.46252 -12.22883 -11.89381 -11.88661 -11.85197 -11.53832 -11.29238 -11.12155 -10.44683 -9.85359 -9.70017 -9.58302 -9.40738 -9.31223 -8.76641 -6.39821 0.38538 0.49622 0.55408 0.98112 1.29148 1.40743 1.47401 2.02562 2.16099 2.19254 2.67480 2.85236 3.29734 3.63421 3.70722 3.88781 3.95456 4.08921 4.16668 4.25296 4.29268 4.35023 4.42504 4.50188 4.56901 4.61512 4.64088 4.75814 4.77119 4.92773 5.03323 5.04821 5.05253 5.12259 5.16076 5.18271 5.24677 5.31300 5.46804 5.56676 5.58565 5.61625 5.69402 5.82132 6.00023 6.06354 6.10673 6.28187 6.56858 6.78300 6.89728 6.94752 7.52424 8.22490 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014247 B = 0.004058 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.809609 B = 6898.418408 C = 7666.446625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 H 0.110 0.890 4 C 0.095 3.905 5 N -0.648 5.648 6 C 0.594 3.406 7 O -0.587 6.587 8 C -0.275 4.275 9 C -0.052 4.052 10 C -0.240 4.240 11 C -0.087 4.087 12 C -0.184 4.184 13 C 0.119 3.881 14 C -0.463 4.463 15 H 0.062 0.938 16 C 0.039 3.961 17 N -0.813 5.813 18 Si 0.975 3.025 19 H -0.253 1.253 20 H -0.255 1.255 21 H -0.274 1.274 22 C 0.159 3.841 23 H 0.072 0.928 24 C -0.087 4.087 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.124 4.124 28 C -0.120 4.120 29 C -0.117 4.117 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.098 0.902 39 H 0.292 0.708 40 H 0.111 0.889 41 H 0.135 0.865 42 H 0.147 0.853 43 H 0.149 0.851 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.908 2.693 -0.589 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.114 4.114 3 H 0.129 0.871 4 C -0.027 4.027 5 N -0.383 5.383 6 C 0.390 3.610 7 O -0.468 6.468 8 C -0.279 4.279 9 C -0.071 4.071 10 C -0.259 4.259 11 C -0.105 4.105 12 C -0.204 4.204 13 C 0.115 3.885 14 C -0.492 4.492 15 H 0.080 0.920 16 C -0.178 4.178 17 N -0.438 5.438 18 Si 0.795 3.205 19 H -0.177 1.177 20 H -0.178 1.178 21 H -0.200 1.200 22 C 0.055 3.945 23 H 0.091 0.909 24 C -0.088 4.088 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.142 4.142 28 C -0.138 4.138 29 C -0.135 4.135 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.129 0.871 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.150 2.314 -1.081 18.329 hybrid contribution 1.217 -0.058 -0.643 1.378 sum -16.933 2.256 -1.725 17.170 Atomic orbital electron populations 1.21606 0.90983 1.02754 1.03232 1.22976 0.97813 0.97425 0.93175 0.87150 1.23583 0.87668 0.97724 0.93754 1.49753 1.09522 1.67077 1.11904 1.18131 0.79369 0.74444 0.89038 1.90666 1.68591 1.52097 1.35490 1.19690 0.94702 1.20596 0.92960 1.21054 0.98479 0.96062 0.91489 1.20753 0.94129 1.13325 0.97690 1.21148 0.94901 0.97202 0.97260 1.21168 0.98993 1.08015 0.92180 1.17751 0.90515 0.86669 0.93535 1.19689 0.96558 1.30448 1.02480 0.91993 1.26736 0.98932 0.93583 0.98508 1.69744 1.17120 1.20498 1.36419 0.85381 0.77144 0.79950 0.77999 1.17692 1.17845 1.19965 1.21454 0.85964 0.92920 0.94150 0.90943 1.19798 0.97729 0.95627 0.95691 1.21208 0.98885 0.94508 0.99880 1.21398 0.96966 0.98218 0.98022 1.21489 0.99731 0.99113 0.93830 1.21440 0.98426 0.93430 1.00460 1.21151 0.97225 0.99908 0.95264 0.92357 0.90172 0.91241 0.88209 0.90046 0.85841 0.84943 0.85983 0.88356 0.89670 0.87095 0.84673 0.83557 0.83356 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.04 8.95 71.98 0.64 -1.40 16 2 C -0.10 -2.15 4.69 -10.37 -0.05 -2.19 16 3 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.09 2.57 5.13 83.26 0.43 3.00 16 5 N -0.65 -24.78 2.90 -841.20 -2.44 -27.22 16 6 C 0.59 30.32 7.45 86.66 0.65 30.97 16 7 O -0.59 -35.43 15.42 -4.05 -0.06 -35.49 16 8 C -0.27 -14.25 5.85 -19.70 -0.12 -14.36 16 9 C -0.05 -2.24 8.68 22.50 0.20 -2.04 16 10 C -0.24 -9.71 10.03 22.41 0.22 -9.48 16 11 C -0.09 -3.84 10.01 22.26 0.22 -3.62 16 12 C -0.18 -9.73 8.66 22.72 0.20 -9.53 16 13 C 0.12 6.80 5.52 -21.11 -0.12 6.69 16 14 C -0.46 -27.69 7.63 23.41 0.18 -27.51 16 15 H 0.06 3.90 6.61 -2.91 -0.02 3.88 16 16 C 0.04 2.13 5.08 85.37 0.43 2.57 16 17 N -0.81 -44.72 11.40 21.88 0.25 -44.47 16 18 Si 0.97 42.20 29.60 68.60 2.03 44.23 16 19 H -0.25 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 C 0.16 4.88 4.52 41.05 0.19 5.06 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 C -0.09 -2.42 3.82 -19.87 -0.08 -2.50 16 25 C -0.13 -3.52 8.13 22.27 0.18 -3.34 16 26 C -0.13 -2.96 10.05 22.27 0.22 -2.73 16 27 C -0.12 -2.42 10.05 22.27 0.22 -2.19 16 28 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 29 C -0.12 -2.72 9.74 22.27 0.22 -2.50 16 30 H 0.06 0.99 6.89 -2.39 -0.02 0.97 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 2.38 5.33 -2.38 -0.01 2.37 16 34 H 0.08 2.20 7.45 -2.39 -0.02 2.18 16 35 H 0.12 4.37 6.02 -2.91 -0.02 4.35 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.10 5.36 6.63 -2.91 -0.02 5.34 16 39 H 0.29 14.43 8.29 -92.71 -0.77 13.66 16 40 H 0.11 3.31 5.48 -2.91 -0.02 3.29 16 41 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 42 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -74.92 358.30 4.86 -70.06 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 1.01 Total: 30.13 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 4.07 Total: -37.24 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -2.19 Total: -71.69 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.06 Total: -35.49 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -74.92 4.86 -70.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601259840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.380 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds