Wall clock time and date at job start Tue Mar 31 2020 13:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46850 * 2 1 4 4 C 1.50697 * 109.47428 * 240.00319 * 2 1 3 5 5 H 1.08003 * 120.00168 * 240.00007 * 4 2 1 6 6 C 1.37883 * 120.00126 * 59.99277 * 4 2 1 7 7 N 1.31518 * 119.99737 * 0.02562 * 6 4 2 8 8 Si 1.86790 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47280 * 90.00138 * 8 6 4 10 10 H 1.48503 * 109.47440 * 210.00061 * 8 6 4 11 11 H 1.48496 * 109.47508 * 330.00468 * 8 6 4 12 12 N 1.46495 * 109.47426 * 119.99863 * 2 1 3 13 13 C 1.46506 * 120.00010 * 60.00107 * 12 2 1 14 14 C 1.34777 * 120.00240 * 240.00664 * 12 2 1 15 15 O 1.21547 * 119.99869 * 355.46067 * 14 12 2 16 16 C 1.47866 * 120.00141 * 175.46702 * 14 12 2 17 17 C 1.39658 * 120.02636 * 41.56544 * 16 14 12 18 18 C 1.38041 * 119.94609 * 180.02562 * 17 16 14 19 19 C 1.38063 * 120.24676 * 0.02562 * 18 17 16 20 20 C 1.39336 * 120.51721 * 359.97438 * 19 18 17 21 21 C 1.39271 * 120.02958 * 221.28917 * 16 14 12 22 22 C 1.48425 * 109.43677 * 179.97438 * 20 19 18 23 23 C 1.39618 * 131.16833 * 180.02562 * 22 20 19 24 24 C 1.37922 * 119.95845 * 180.02562 * 23 22 20 25 25 C 1.38339 * 120.25397 * 0.02562 * 24 23 22 26 26 C 1.38351 * 120.09553 * 359.97438 * 25 24 23 27 27 C 1.37897 * 120.04076 * 0.02562 * 26 25 24 28 28 C 1.50892 * 132.16524 * 179.97438 * 27 26 25 29 29 H 1.08994 * 109.47357 * 60.00126 * 1 2 3 30 30 H 1.08996 * 109.47045 * 299.99603 * 1 2 3 31 31 H 1.09007 * 109.46850 * 179.97438 * 1 2 3 32 32 H 0.96996 * 119.99882 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.46663 * 95.17103 * 13 12 2 34 34 H 1.08998 * 109.47072 * 215.17449 * 13 12 2 35 35 H 1.09000 * 109.46812 * 335.17715 * 13 12 2 36 36 H 1.08002 * 120.02643 * 0.02562 * 17 16 14 37 37 H 1.08006 * 119.87790 * 179.97438 * 18 17 16 38 38 H 1.07997 * 120.07775 * 359.97438 * 21 16 14 39 39 H 1.07996 * 120.01873 * 0.02562 * 23 22 20 40 40 H 1.08005 * 119.87176 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.95431 * 180.02562 * 25 24 23 42 42 H 1.08005 * 119.97691 * 180.02562 * 26 25 24 43 43 H 1.09005 * 110.13460 * 60.85497 * 28 27 26 44 44 H 1.08998 * 110.13803 * 299.15446 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.3429 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 7 2.0184 -0.6905 1.1961 13 6 1.6646 -2.0932 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.1549 1.1014 1.8512 16 6 3.2033 -0.7000 3.3390 17 6 3.5978 -2.0396 3.3241 18 6 3.9798 -2.6585 4.4974 19 6 3.9731 -1.9582 5.6872 20 6 3.5822 -0.6212 5.7191 21 6 3.2019 0.0110 4.5365 22 6 3.6666 -0.1150 7.1118 23 6 3.3846 1.1413 7.6517 24 6 3.5473 1.3624 9.0034 25 6 3.9898 0.3435 9.8280 26 6 4.2711 -0.9038 9.2997 27 6 4.1112 -1.1337 7.9494 28 6 4.3320 -2.3595 7.0975 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.7093 1.1618 -3.4843 33 1 2.4611 -2.7356 1.0526 34 1 1.5339 -2.2630 2.4967 35 1 0.7354 -2.3243 0.9071 36 1 3.6040 -2.5909 2.3955 37 1 4.2844 -3.6947 4.4847 38 1 2.9019 1.0484 4.5497 39 1 3.0393 1.9395 7.0114 40 1 3.3283 2.3346 9.4196 41 1 4.1150 0.5218 10.8857 42 1 4.6160 -1.6980 9.9453 43 1 3.6851 -3.1705 7.4322 44 1 5.3764 -2.6673 7.1465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728874263.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:25 Heat of formation + Delta-G solvation = 11.921737 kcal Electronic energy + Delta-G solvation = -25805.505134 eV Core-core repulsion = 22265.955248 eV Total energy + Delta-G solvation = -3539.549887 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92349 -40.83807 -38.86088 -37.24963 -35.62488 -34.66401 -32.91446 -31.92326 -31.25123 -29.63527 -28.24622 -27.66907 -27.30484 -24.94711 -24.07614 -22.24212 -22.12105 -21.92648 -20.31784 -18.63686 -18.21144 -17.53368 -17.15206 -16.92249 -16.62357 -16.25545 -15.98116 -15.70141 -15.60681 -15.09874 -14.89622 -14.57353 -14.45163 -14.31580 -14.01969 -13.79313 -13.51723 -13.43302 -13.16124 -13.01074 -12.91938 -12.76509 -12.72964 -12.51343 -12.37998 -12.21030 -12.15842 -11.95430 -11.72768 -11.21418 -10.85441 -10.64725 -10.53470 -9.98748 -9.60314 -9.39584 -9.02572 -8.16433 -6.33482 -0.37680 -0.00236 0.44153 0.87558 1.40746 1.42809 1.52755 1.77539 2.21078 2.43765 2.60300 3.03069 3.11519 3.23958 3.44885 3.58061 3.80098 3.93231 4.04650 4.15857 4.25398 4.31880 4.40291 4.48548 4.60707 4.64409 4.67115 4.71647 4.75871 4.81070 4.84467 4.91162 4.96191 4.99907 5.05367 5.08419 5.18880 5.32521 5.41905 5.46835 5.51698 5.56835 5.58989 5.62941 5.68556 5.84230 5.98667 6.05292 6.11992 6.70432 6.73530 7.21977 7.40545 8.88417 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027731 B = 0.002697 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.466435 B =10378.435676 C =10952.094184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.260 3.740 3 H 0.007 0.993 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.590 5.590 13 C 0.080 3.920 14 C 0.536 3.464 15 O -0.604 6.604 16 C -0.135 4.135 17 C -0.085 4.085 18 C -0.093 4.093 19 C -0.072 4.072 20 C -0.082 4.082 21 C -0.066 4.066 22 C -0.087 4.087 23 C -0.120 4.120 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.102 4.102 27 C -0.097 4.097 28 C -0.037 4.037 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.175 0.825 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.130 0.870 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -11.524 25.541 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.025 0.975 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.319 5.319 13 C -0.062 4.062 14 C 0.326 3.674 15 O -0.488 6.488 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.110 4.110 19 C -0.073 4.073 20 C -0.082 4.082 21 C -0.085 4.085 22 C -0.087 4.087 23 C -0.138 4.138 24 C -0.145 4.145 25 C -0.130 4.130 26 C -0.120 4.120 27 C -0.097 4.097 28 C -0.072 4.072 29 H 0.089 0.911 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.169 0.831 37 H 0.192 0.808 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.161 0.839 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.147 0.853 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 5.542 -10.848 25.244 28.029 hybrid contribution -0.107 0.907 -1.632 1.870 sum 5.435 -9.941 23.612 26.189 Atomic orbital electron populations 1.21897 0.96858 1.00389 0.99990 1.18621 0.91776 0.92199 0.81583 0.97533 1.21548 1.32042 1.13126 0.90907 0.91857 1.25788 0.95041 0.95640 1.02162 1.70029 1.37348 1.23887 1.24514 0.85392 0.78892 0.78218 0.78135 1.18987 1.21226 1.19478 1.48165 1.48088 1.13524 1.22076 1.22102 1.01857 0.80247 1.01993 1.19018 0.78565 0.85451 0.84405 1.90688 1.57854 1.21282 1.78957 1.19666 1.05967 0.96152 0.92011 1.21769 0.96178 0.91892 1.00468 1.20679 0.99572 1.01686 0.89067 1.20903 0.96630 0.93113 0.96621 1.19377 1.01686 0.95683 0.91462 1.20745 0.97992 0.98930 0.90878 1.19430 1.02249 0.95416 0.91598 1.21109 1.00416 0.95763 0.96509 1.21305 0.99898 1.00873 0.92391 1.21571 0.97778 0.92425 1.01190 1.20781 1.00049 0.98421 0.92747 1.20620 0.99112 0.95631 0.94340 1.19655 1.04742 0.96041 0.86760 0.91065 0.96361 0.92974 0.92584 0.91255 0.89575 0.90662 0.83110 0.80803 0.87649 0.86975 0.83862 0.82535 0.82511 0.85265 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.63 8.96 71.98 0.64 -5.99 16 2 C 0.26 14.14 2.63 44.25 0.12 14.25 16 3 H 0.01 0.44 6.91 -2.38 -0.02 0.42 16 4 C -0.54 -29.88 8.37 25.60 0.21 -29.66 16 5 H 0.06 3.38 7.65 -2.91 -0.02 3.36 16 6 C 0.01 0.73 5.30 84.66 0.45 1.18 16 7 N -0.92 -53.97 11.32 21.45 0.24 -53.73 16 8 Si 0.97 43.51 29.54 68.60 2.03 45.53 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 N -0.59 -26.74 2.75 -830.19 -2.29 -29.03 16 13 C 0.08 2.64 8.13 127.77 1.04 3.68 16 14 C 0.54 25.07 7.32 86.79 0.64 25.71 16 15 O -0.60 -34.36 16.27 -3.86 -0.06 -34.43 16 16 C -0.13 -4.85 5.15 -20.14 -0.10 -4.95 16 17 C -0.08 -2.26 7.62 22.57 0.17 -2.09 16 18 C -0.09 -1.80 10.02 22.18 0.22 -1.58 16 19 C -0.07 -1.53 6.31 -19.56 -0.12 -1.65 16 20 C -0.08 -2.30 6.19 -20.02 -0.12 -2.42 16 21 C -0.07 -2.29 9.69 22.79 0.22 -2.07 16 22 C -0.09 -2.16 6.20 -20.00 -0.12 -2.28 16 23 C -0.12 -2.80 10.09 22.53 0.23 -2.58 16 24 C -0.13 -2.19 10.02 22.22 0.22 -1.96 16 25 C -0.11 -1.49 10.05 22.32 0.22 -1.27 16 26 C -0.10 -1.37 10.04 22.22 0.22 -1.15 16 27 C -0.10 -1.76 6.30 -19.66 -0.12 -1.88 16 28 C -0.04 -0.50 6.71 29.24 0.20 -0.31 16 29 H 0.07 3.91 6.07 -2.39 -0.01 3.89 16 30 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 2.33 6.67 -2.38 -0.02 2.31 16 32 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.07 2.03 6.85 -2.39 -0.02 2.01 16 34 H 0.09 2.35 5.99 -2.39 -0.01 2.34 16 35 H 0.07 2.49 6.44 -2.39 -0.02 2.48 16 36 H 0.15 3.65 5.52 -2.91 -0.02 3.63 16 37 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 38 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.11 2.71 8.06 -2.91 -0.02 2.68 16 40 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 43 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -77.83 359.47 5.15 -72.68 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 1.02 Total: 15.99 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: 4.21 Total: -17.02 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -2.04 Total: -82.76 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.06 Total: -34.43 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -77.83 5.15 -72.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728874263.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.606 kcal (2) G-P(sol) polarization free energy of solvation -77.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds