Wall clock time and date at job start Tue Mar 31 2020 12:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47213 * 2 1 4 4 O 1.21274 * 120.00154 * 0.02562 * 3 2 1 5 5 C 1.47018 * 120.00178 * 180.02562 * 3 2 1 6 6 C 1.39617 * 120.12280 * 359.73085 * 5 3 2 7 7 C 1.39209 * 119.70628 * 179.74393 * 6 5 3 8 8 C 1.47749 * 120.02670 * 180.25401 * 7 6 5 9 9 O 1.21571 * 119.99655 * 224.91367 * 8 7 6 10 10 N 1.34768 * 120.00314 * 44.90582 * 8 7 6 11 11 C 1.46503 * 120.00323 * 185.80085 * 10 8 7 12 12 C 1.50709 * 109.46802 * 90.00658 * 11 10 8 13 13 H 1.08004 * 119.99774 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00037 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00014 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 120.00011 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47143 * 90.00302 * 16 14 12 18 18 H 1.48498 * 109.47138 * 210.00085 * 16 14 12 19 19 H 1.48505 * 109.46897 * 330.00338 * 16 14 12 20 20 C 1.46503 * 120.00073 * 5.80914 * 10 8 7 21 21 C 1.53001 * 109.47237 * 125.13142 * 20 10 8 22 22 C 1.53001 * 109.47193 * 245.13793 * 20 10 8 23 23 C 1.39885 * 119.94751 * 0.55067 * 7 6 5 24 24 C 1.37868 * 120.25877 * 359.69758 * 23 7 6 25 25 C 1.38454 * 120.29635 * 0.03046 * 24 23 7 26 26 F 1.35100 * 119.97679 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46689 * 299.99709 * 1 2 3 29 29 H 1.08999 * 109.47451 * 59.99235 * 1 2 3 30 30 H 1.09001 * 109.47078 * 240.00874 * 2 1 3 31 31 H 1.08991 * 109.47654 * 120.00538 * 2 1 3 32 32 H 1.07999 * 120.15108 * 359.97438 * 6 5 3 33 33 H 1.08996 * 109.47474 * 210.00366 * 11 10 8 34 34 H 1.08997 * 109.46985 * 330.00944 * 11 10 8 35 35 H 0.96999 * 120.00231 * 180.02562 * 15 14 12 36 36 H 1.09006 * 109.46632 * 5.13372 * 20 10 8 37 37 H 1.08999 * 109.46888 * 60.00849 * 21 20 10 38 38 H 1.08997 * 109.46875 * 179.97438 * 21 20 10 39 39 H 1.08991 * 109.47537 * 300.00090 * 21 20 10 40 40 H 1.08999 * 109.47090 * 59.99593 * 22 20 10 41 41 H 1.09000 * 109.46973 * 179.97438 * 22 20 10 42 42 H 1.09003 * 109.46784 * 299.99850 * 22 20 10 43 43 H 1.08004 * 119.87079 * 179.68102 * 23 7 6 44 44 H 1.08003 * 119.84817 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2443 2.3426 0.0005 5 6 3.4777 1.6895 -0.0006 6 6 4.3873 0.6303 0.0046 7 6 5.7540 0.8946 -0.0014 8 6 6.7228 -0.2210 -0.0017 9 8 7.6871 -0.1887 0.7379 10 7 6.5375 -1.2743 -0.8217 11 6 7.4246 -2.4368 -0.7331 12 6 6.8589 -3.4263 0.2529 13 1 5.9311 -3.2109 0.7621 14 6 7.5257 -4.6065 0.5048 15 7 7.0318 -5.4702 1.3647 16 14 9.1300 -4.9793 -0.3765 17 1 10.2670 -4.4556 0.4225 18 1 9.2752 -6.4481 -0.5402 19 1 9.1233 -4.3305 -1.7123 20 6 5.4489 -1.2568 -1.8020 21 6 6.0165 -1.5151 -3.1992 22 6 4.4324 -2.3464 -1.4549 23 6 6.2095 2.2172 -0.0009 24 6 5.3098 3.2618 -0.0007 25 6 3.9482 3.0109 -0.0005 26 9 3.0723 4.0394 0.0002 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8898 32 1 4.0322 -0.3897 0.0094 33 1 7.5067 -2.9068 -1.7130 34 1 8.4116 -2.1160 -0.4001 35 1 7.5011 -6.3003 1.5423 36 1 4.9587 -0.2834 -1.7832 37 1 6.5066 -2.4885 -3.2180 38 1 5.2065 -1.5025 -3.9284 39 1 6.7405 -0.7388 -3.4465 40 1 4.0281 -2.1624 -0.4596 41 1 3.6223 -2.3331 -2.1840 42 1 4.9226 -3.3198 -1.4737 43 1 7.2702 2.4208 -0.0003 44 1 5.6688 4.2804 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756961457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:35 Heat of formation + Delta-G solvation = -109.433665 kcal Electronic energy + Delta-G solvation = -27956.443785 eV Core-core repulsion = 23980.862308 eV Total energy + Delta-G solvation = -3975.581477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.13102 -41.69799 -40.61432 -38.95345 -37.71747 -34.86157 -34.07865 -32.63585 -32.50982 -32.32367 -29.70752 -28.05567 -26.63134 -25.25526 -24.60921 -23.66985 -22.53534 -21.08401 -19.82757 -19.02963 -18.83072 -18.57682 -17.84774 -17.18300 -16.97769 -16.88098 -16.30548 -16.22891 -15.95307 -15.68748 -15.34327 -15.24023 -14.60297 -14.55002 -14.30325 -14.24606 -14.04536 -13.90317 -13.59905 -13.42675 -13.19018 -13.15496 -12.91584 -12.71949 -12.62896 -12.51454 -12.35110 -12.26008 -12.04952 -11.89802 -11.78932 -11.51401 -10.97953 -10.75688 -10.74718 -10.35299 -9.95456 -9.44685 -8.26815 -6.28949 -0.71200 -0.27917 1.12038 1.35588 1.39516 1.46105 1.73045 2.14962 2.35154 2.41912 2.75146 2.94622 3.07537 3.32355 3.49604 3.78966 3.94764 3.94853 3.97702 4.23364 4.24531 4.27608 4.37997 4.43811 4.58802 4.66134 4.74252 4.80855 4.85735 4.88930 4.93264 4.95368 5.02103 5.03882 5.05267 5.08016 5.12701 5.31536 5.39148 5.47757 5.50798 5.63010 5.67907 6.29942 6.37297 6.62061 6.72505 7.19910 7.36374 8.88970 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.004133 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.988603 B = 6772.372684 C = 7643.692552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.173 4.173 3 C 0.399 3.601 4 O -0.475 6.475 5 C -0.217 4.217 6 C -0.009 4.009 7 C -0.152 4.152 8 C 0.547 3.453 9 O -0.583 6.583 10 N -0.581 5.581 11 C 0.222 3.778 12 C -0.519 4.519 13 H 0.043 0.957 14 C 0.016 3.984 15 N -0.943 5.943 16 Si 0.932 3.068 17 H -0.280 1.280 18 H -0.280 1.280 19 H -0.239 1.239 20 C 0.116 3.884 21 C -0.160 4.160 22 C -0.162 4.162 23 C -0.007 4.007 24 C -0.154 4.154 25 C 0.159 3.841 26 F -0.124 7.124 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.126 0.874 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.053 0.947 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.107 0.893 37 H 0.051 0.949 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.157 0.843 44 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 13.782 -10.016 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.210 4.210 3 C 0.278 3.722 4 O -0.351 6.351 5 C -0.218 4.218 6 C -0.027 4.027 7 C -0.156 4.156 8 C 0.335 3.665 9 O -0.464 6.464 10 N -0.311 5.311 11 C 0.100 3.900 12 C -0.557 4.557 13 H 0.062 0.938 14 C -0.182 4.182 15 N -0.583 5.583 16 Si 0.757 3.243 17 H -0.206 1.206 18 H -0.206 1.206 19 H -0.162 1.162 20 C 0.014 3.986 21 C -0.217 4.217 22 C -0.219 4.219 23 C -0.026 4.026 24 C -0.172 4.172 25 C 0.139 3.861 26 F -0.102 7.102 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.144 0.856 31 H 0.129 0.871 32 H 0.176 0.824 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.175 0.825 44 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.354 14.114 -9.602 19.005 hybrid contribution 0.843 -0.578 0.440 1.113 sum -7.511 13.537 -9.162 17.989 Atomic orbital electron populations 1.21582 0.93078 1.02950 1.02226 1.22128 0.98884 0.93273 1.06685 1.22738 0.86464 0.92702 0.70254 1.90562 1.58481 1.48714 1.37383 1.20609 0.96619 0.92322 1.12300 1.21734 0.90537 0.99830 0.90648 1.19939 0.93508 0.94332 1.07791 1.18622 0.85109 0.82625 0.80098 1.90749 1.32736 1.80538 1.42373 1.48034 1.31932 1.16167 1.34935 1.19382 0.89929 0.83516 0.97178 1.21487 1.08601 1.01966 1.23674 0.93848 1.25660 1.00783 0.96038 0.95711 1.70019 1.41359 1.10584 1.36357 0.85940 0.79982 0.77727 0.80701 1.20639 1.20578 1.16190 1.21657 0.87356 1.01044 0.88516 1.22147 1.02431 1.02037 0.95111 1.22249 0.98869 0.99198 1.01608 1.21437 1.01622 0.89408 0.90134 1.21307 0.89437 1.02338 1.04119 1.18364 0.87822 0.83445 0.96480 1.91570 1.68966 1.57057 1.92622 0.89980 0.93288 0.92521 0.85590 0.87095 0.82400 0.92878 0.96451 0.92555 0.87489 0.93036 0.88456 0.92251 0.93219 0.88546 0.93038 0.82528 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.20 71.98 0.66 -1.70 16 2 C -0.17 -2.94 5.02 29.85 0.15 -2.79 16 3 C 0.40 9.20 7.11 27.99 0.20 9.40 16 4 O -0.47 -13.73 14.96 -3.01 -0.05 -13.78 16 5 C -0.22 -5.00 5.87 -20.15 -0.12 -5.12 16 6 C -0.01 -0.21 6.82 22.84 0.16 -0.06 16 7 C -0.15 -4.25 4.94 -20.13 -0.10 -4.35 16 8 C 0.55 20.73 7.23 86.76 0.63 21.36 16 9 O -0.58 -27.51 16.53 -3.94 -0.07 -27.57 16 10 N -0.58 -21.39 2.39 -805.61 -1.92 -23.31 16 11 C 0.22 9.96 3.84 85.64 0.33 10.29 16 12 C -0.52 -27.90 8.41 25.60 0.22 -27.69 16 13 H 0.04 2.57 7.83 -2.91 -0.02 2.55 16 14 C 0.02 0.90 5.47 84.65 0.46 1.36 16 15 N -0.94 -56.78 13.96 21.44 0.30 -56.48 16 16 Si 0.93 42.47 27.47 68.60 1.88 44.36 16 17 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 18 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 19 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 20 C 0.12 3.07 2.40 44.99 0.11 3.18 16 21 C -0.16 -3.59 9.07 71.98 0.65 -2.94 16 22 C -0.16 -4.27 8.22 71.98 0.59 -3.68 16 23 C -0.01 -0.16 9.67 22.58 0.22 0.06 16 24 C -0.15 -2.87 9.99 22.23 0.22 -2.65 16 25 C 0.16 3.64 7.30 22.81 0.17 3.80 16 26 F -0.12 -3.19 15.53 44.97 0.70 -2.49 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 29 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.13 1.59 8.09 -2.39 -0.02 1.57 16 31 H 0.11 1.78 8.08 -2.39 -0.02 1.76 16 32 H 0.16 3.61 4.08 -2.91 -0.01 3.60 16 33 H 0.05 2.21 5.23 -2.39 -0.01 2.20 16 34 H 0.02 0.86 6.78 -2.39 -0.02 0.84 16 35 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.11 2.30 4.79 -2.38 -0.01 2.29 16 37 H 0.05 1.35 6.52 -2.39 -0.02 1.33 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.36 6.53 -2.39 -0.02 1.34 16 41 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.05 1.77 6.93 -2.39 -0.02 1.75 16 43 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 44 H 0.18 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -74.04 360.18 6.36 -67.68 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.97 Total: 13.11 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 4.54 Total: -1.51 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -1.62 Total: -79.80 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.11 Total: -41.35 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.70 Total: -2.49 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.88 Total: 44.36 kcal Total: -74.04 6.36 -67.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756961457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.752 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds