Wall clock time and date at job start Tue Mar 31 2020 12:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.19478 * 2 1 4 4 C 1.52792 * 109.20354 * 240.65715 * 2 1 3 5 5 N 1.47231 * 107.89451 * 287.17024 * 4 2 1 6 6 C 1.34788 * 121.33589 * 115.71337 * 5 4 2 7 7 O 1.21586 * 119.99960 * 354.46537 * 6 5 4 8 8 C 1.47637 * 119.99612 * 174.46590 * 6 5 4 9 9 C 1.40016 * 119.89705 * 328.23250 * 8 6 5 10 10 C 1.36320 * 120.10616 * 179.76481 * 9 8 6 11 11 C 1.40892 * 119.89003 * 0.51211 * 10 9 8 12 12 C 1.41109 * 120.10488 * 179.72090 * 11 10 9 13 13 H 1.07998 * 120.00076 * 205.18418 * 12 11 10 14 14 C 1.40227 * 119.99653 * 25.18839 * 12 11 10 15 15 N 1.30647 * 120.00155 * 17.05030 * 14 12 11 16 16 Si 1.86803 * 119.99897 * 197.05768 * 14 12 11 17 17 H 1.48504 * 109.46751 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47366 * 119.99569 * 16 14 12 19 19 H 1.48506 * 109.46745 * 239.99762 * 16 14 12 20 20 C 1.40885 * 119.79258 * 359.74048 * 11 10 9 21 21 C 1.36314 * 119.89572 * 359.97438 * 20 11 10 22 22 C 1.46676 * 117.32459 * 295.73467 * 5 4 2 23 23 C 1.50808 * 109.68130 * 44.35300 * 22 5 4 24 24 C 1.38834 * 117.80498 * 169.07035 * 23 22 5 25 25 C 1.37954 * 120.50932 * 179.44473 * 24 23 22 26 26 C 1.38268 * 119.71802 * 0.07425 * 25 24 23 27 27 C 1.37911 * 119.82420 * 359.69647 * 26 25 24 28 28 C 1.37669 * 122.34961 * 348.64934 * 23 22 5 29 29 H 1.08999 * 109.46953 * 179.33852 * 1 2 3 30 30 H 1.08999 * 109.47172 * 299.34688 * 1 2 3 31 31 H 1.09001 * 109.46761 * 59.34785 * 1 2 3 32 32 H 1.08996 * 109.77167 * 167.57122 * 4 2 1 33 33 H 1.08997 * 109.77279 * 46.76917 * 4 2 1 34 34 H 1.07997 * 119.94474 * 0.02562 * 9 8 6 35 35 H 1.07996 * 120.05877 * 180.27687 * 10 9 8 36 36 H 0.97008 * 119.99940 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.05359 * 180.02562 * 20 11 10 38 38 H 1.08002 * 119.95045 * 179.97438 * 21 20 11 39 39 H 1.08996 * 109.44051 * 284.28604 * 22 5 4 40 40 H 1.09004 * 109.43948 * 164.41579 * 22 5 4 41 41 H 1.08000 * 119.74598 * 359.41792 * 24 23 22 42 42 H 1.08006 * 120.14439 * 179.79088 * 25 24 23 43 43 H 1.07997 * 120.09350 * 179.97438 * 26 25 24 44 44 H 1.07993 * 119.70807 * 180.32511 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8885 1.0294 0.0000 4 6 2.0327 -0.7071 -1.2578 5 7 1.7909 -2.1500 -1.0928 6 6 0.9390 -2.8146 -1.8986 7 8 0.2767 -2.2064 -2.7171 8 6 0.8101 -4.2811 -1.7874 9 6 1.9158 -5.0522 -1.4090 10 6 1.8004 -6.4062 -1.3003 11 6 0.5686 -7.0305 -1.5799 12 6 0.4456 -8.4322 -1.4746 13 1 -0.3081 -8.9527 -2.0468 14 6 1.3019 -9.1494 -0.6268 15 7 1.9756 -8.5245 0.3019 16 14 1.4795 -10.9983 -0.8254 17 1 0.6157 -11.4615 -1.9410 18 1 2.8956 -11.3303 -1.1246 19 1 1.0679 -11.6730 0.4319 20 6 -0.5397 -6.2508 -1.9655 21 6 -0.4162 -4.8970 -2.0658 22 6 2.5138 -2.8350 -0.0161 23 6 2.4651 -2.0008 1.2393 24 6 2.8927 -2.5865 2.4232 25 6 2.8827 -1.8706 3.6024 26 6 2.4417 -0.5601 3.6049 27 6 2.0211 0.0243 2.4286 28 6 2.0244 -0.6965 1.2404 29 1 -0.3633 -1.0276 -0.0119 30 1 -0.3633 0.5036 0.8958 31 1 -0.3633 0.5239 -0.8841 32 1 3.0999 -0.5238 -1.3823 33 1 1.4905 -0.3395 -2.1290 34 1 2.8606 -4.5731 -1.1989 35 1 2.6526 -6.9997 -1.0041 36 1 2.5683 -9.0206 0.8881 37 1 -1.4860 -6.7250 -2.1804 38 1 -1.2651 -4.2985 -2.3616 39 1 3.5520 -2.9830 -0.3131 40 1 2.0501 -3.8031 0.1736 41 1 3.2355 -3.6107 2.4210 42 1 3.2135 -2.3332 4.5206 43 1 2.4309 0.0058 4.5246 44 1 1.6821 1.0496 2.4318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758116874.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:51 Heat of formation + Delta-G solvation = -2.633954 kcal Electronic energy + Delta-G solvation = -26632.431165 eV Core-core repulsion = 23092.250096 eV Total energy + Delta-G solvation = -3540.181069 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.73464 -40.16811 -38.91999 -37.14758 -35.79753 -35.05573 -32.34602 -31.99221 -31.35938 -30.75724 -28.42987 -27.48348 -26.52744 -24.09569 -23.41432 -23.23586 -22.50529 -21.35047 -19.70246 -19.32399 -18.05010 -17.93013 -17.18408 -16.87550 -16.53044 -16.11634 -15.85945 -15.59091 -15.42456 -14.93702 -14.70825 -14.58830 -14.51505 -14.20531 -14.08669 -13.81902 -13.67595 -13.45045 -13.18183 -13.02114 -12.86252 -12.82576 -12.66154 -12.38662 -12.35072 -12.19051 -11.89361 -11.76623 -11.56306 -11.33790 -11.09492 -10.69984 -9.81267 -9.59844 -9.58490 -9.40726 -9.37749 -8.77221 -6.47416 0.43525 0.47897 0.49800 1.12304 1.38819 1.42303 1.54997 1.97655 2.12305 2.18259 2.72618 2.83529 3.59326 3.65172 3.70911 3.83476 3.97981 4.12556 4.16098 4.26678 4.31441 4.39712 4.42987 4.45519 4.51018 4.65286 4.68057 4.73938 4.78554 4.92063 4.93501 4.96114 5.03330 5.11432 5.15081 5.18815 5.26966 5.28677 5.51476 5.59043 5.62188 5.64618 5.69800 5.81293 5.96209 5.99467 6.12891 6.22163 6.48974 6.54603 6.78402 6.88666 7.32213 8.17873 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.003798 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.886606 B = 7369.594371 C = 8752.616775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.060 4.060 3 H 0.118 0.882 4 C 0.110 3.890 5 N -0.609 5.609 6 C 0.579 3.421 7 O -0.596 6.596 8 C -0.290 4.290 9 C -0.060 4.060 10 C -0.193 4.193 11 C 0.102 3.898 12 C -0.476 4.476 13 H 0.083 0.917 14 C 0.040 3.960 15 N -0.798 5.798 16 Si 0.985 3.015 17 H -0.259 1.259 18 H -0.260 1.260 19 H -0.263 1.263 20 C -0.251 4.251 21 C -0.036 4.036 22 C 0.142 3.858 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.121 4.121 28 C -0.079 4.079 29 H 0.019 0.981 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.296 0.704 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 12.024 7.892 15.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 H 0.136 0.864 4 C -0.011 4.011 5 N -0.340 5.340 6 C 0.374 3.626 7 O -0.479 6.479 8 C -0.294 4.294 9 C -0.079 4.079 10 C -0.213 4.213 11 C 0.099 3.901 12 C -0.504 4.504 13 H 0.101 0.899 14 C -0.179 4.179 15 N -0.422 5.422 16 Si 0.805 3.195 17 H -0.183 1.183 18 H -0.185 1.185 19 H -0.188 1.188 20 C -0.270 4.270 21 C -0.055 4.055 22 C 0.020 3.980 23 C -0.108 4.108 24 C -0.145 4.145 25 C -0.143 4.143 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.079 4.079 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.142 0.858 35 H 0.133 0.867 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.143 0.857 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.702 12.324 7.665 15.593 hybrid contribution -0.187 -1.082 -0.127 1.105 sum 5.515 11.242 7.538 14.615 Atomic orbital electron populations 1.21713 0.94477 1.00355 1.02268 1.20414 0.95973 1.00174 0.91284 0.86375 1.21796 1.01651 0.79168 0.98523 1.47802 1.44211 1.09763 1.32214 1.18431 0.77473 0.87460 0.79260 1.90607 1.47169 1.70614 1.39536 1.19132 0.97046 0.91405 1.21823 1.20931 0.96918 0.93900 0.96131 1.20998 0.97887 0.93840 1.08544 1.18108 0.91086 0.93900 0.87029 1.20099 1.15692 0.92472 1.22091 0.89933 1.26856 0.92479 1.06250 0.92282 1.69753 1.19503 1.41026 1.11884 0.85107 0.79555 0.75274 0.79583 1.18254 1.18454 1.18780 1.20831 0.98374 0.93269 1.14569 1.20423 0.95683 0.94345 0.95077 1.20980 0.97171 0.95814 0.84083 1.19958 1.01013 0.94670 0.95157 1.21233 1.00378 1.00511 0.92373 1.21354 0.99836 0.95084 0.98016 1.21412 0.98489 0.95323 0.98805 1.21406 1.00017 1.00750 0.91681 1.19615 0.99041 0.93244 0.95989 0.96186 0.91086 0.92041 0.89280 0.89763 0.85764 0.86732 0.89227 0.87894 0.88313 0.89239 0.88748 0.85695 0.83988 0.83421 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.00 71.98 0.65 -2.77 16 2 C -0.06 -1.39 2.78 -11.64 -0.03 -1.42 16 3 H 0.12 1.99 8.11 -2.38 -0.02 1.97 16 4 C 0.11 3.06 5.79 86.17 0.50 3.55 16 5 N -0.61 -21.08 2.63 -827.67 -2.17 -23.25 16 6 C 0.58 25.12 7.44 86.72 0.64 25.77 16 7 O -0.60 -28.62 16.23 -3.99 -0.06 -28.68 16 8 C -0.29 -13.52 5.38 -19.93 -0.11 -13.63 16 9 C -0.06 -2.69 7.39 22.25 0.16 -2.53 16 10 C -0.19 -9.59 8.63 22.47 0.19 -9.40 16 11 C 0.10 5.32 5.57 -21.28 -0.12 5.21 16 12 C -0.48 -24.20 9.05 23.46 0.21 -23.99 16 13 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 14 C 0.04 1.86 5.15 85.35 0.44 2.30 16 15 N -0.80 -37.74 10.94 21.87 0.24 -37.50 16 16 Si 0.98 34.89 29.59 68.60 2.03 36.92 16 17 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 18 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 19 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 20 C -0.25 -12.61 9.73 22.47 0.22 -12.39 16 21 C -0.04 -1.76 9.53 22.25 0.21 -1.55 16 22 C 0.14 4.47 4.42 85.63 0.38 4.85 16 23 C -0.11 -3.01 5.82 -19.82 -0.12 -3.13 16 24 C -0.13 -3.24 9.62 22.35 0.21 -3.03 16 25 C -0.13 -2.62 10.05 22.21 0.22 -2.40 16 26 C -0.12 -2.29 10.05 22.20 0.22 -2.07 16 27 C -0.12 -2.42 9.50 22.37 0.21 -2.21 16 28 C -0.08 -1.96 5.02 -19.85 -0.10 -2.06 16 29 H 0.02 0.66 7.92 -2.39 -0.02 0.64 16 30 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.54 7.03 -2.39 -0.02 2.52 16 34 H 0.12 4.78 5.46 -2.91 -0.02 4.76 16 35 H 0.11 5.75 6.16 -2.91 -0.02 5.73 16 36 H 0.30 12.39 8.29 -92.70 -0.77 11.62 16 37 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 38 H 0.10 4.65 7.93 -2.91 -0.02 4.63 16 39 H 0.09 2.49 7.64 -2.39 -0.02 2.47 16 40 H 0.09 3.48 4.97 -2.38 -0.01 3.47 16 41 H 0.13 3.10 8.05 -2.91 -0.02 3.08 16 42 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 43 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 44 H 0.14 2.10 8.05 -2.91 -0.02 2.08 16 Total: -1.00 -62.14 356.69 5.05 -57.09 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 1.01 Total: 36.32 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 4.01 Total: -40.90 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: -1.93 Total: -60.75 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -0.06 Total: -28.68 kcal Atomic # 14 Polarization: 34.89 SS G_CDS: 2.03 Total: 36.92 kcal Total: -62.14 5.05 -57.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758116874.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.456 kcal (2) G-P(sol) polarization free energy of solvation -62.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds